rna5497, rna5497 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5497
Unique Name	rna5497
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1719
Alignment location	CM002466.1:104796..107196 +

Link to JBrowse

Properties


Property Name	Value
Product	c6 finger domain protein
Orig transcript id	gnl\|cribi\|Naga_100146g3.3716.mrna
Orig protein id	gnl\|cribi\|Naga_100146g3.3716
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:104796..107196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100146g3	gene5309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5497	rna5497-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25188.1	cds5483	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:104796..107196+
coding sequence from alignment at CM002466.1:104796..107196+

mRNA sequence

>rna5497 ID=rna5497|Name=rna5497|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp
ATGAGAGAGGAGGAAAACAAAGGACAACATCACGTCCACGAAGAGGAGGA
ACAAAAAAAGGCCATGAAGTGTGGGACAATGATATCATCCAAAAATCCAA
GTGCAGCATGCCGAACCTTCTGGATGGCGGGTCAACCGCTCGATCCCATG
GTGGCCCAACGGAAGGGCGATGCGCCGGGTGGTGGAGAAGTGCAAAGGGC
ACCGCGGAGAAGGTTGAGAGACGGACGGACATGTTTGGAATGCAAGAGAA
GTAAGGTCAAGTGCGACAGAAAGCAGCCCTCCTGTACCCGGTGTGCGCGC
AGCAATCTTAAATGCCTGCCTCAAAAGAGAAAACCAGGGCGTCCGCGATG
GGGCCCATACATCTCCATCATGGGTGACTCGAGGGGTGGCCCTTCCTCCA
CATCTTTACCTCCCCCTCGGACCTGGCTGGGACCCTCCGGCCCTACCCTT
GTTCCGGCGTTGCCGTCTAGCGAGCGGCCGAGGGGTGTGACGGGAGGAAG
GGAAGGAGGGCTTGATCGCTTACCTGTCTCGAAAGCTGTCACACAAACAG
CACCGGGGATGCACATGTTGTACCAGTTGCAGCAACAACAAGAGCGACAG
CAACAAGAACAACAACTACAACAGCACCACCACCACTACCACCACCACCA
CCACCAACAAGGACAACACCAGGAGCAGCAGCCGCGGCGCGGGGGTCCGA
CCCCACAGACACAATCTGCGTGGCACAGAAAGCCGTCCCACCCCTCCCTC
GTCGCTGCCTCCGTGACCCCGCGCACGCAAGACCCAGAGACGGGAGGAGG
GCAGAGGATGGGGAGGGGAGAGGAAGGGGTAAGGAAGGAAGGTGGCGGGG
ATCAGGACGGGACGTTCCTTTCACGGATAGCGGCTTTCCTCCAGCAGAAC
ACCCTCCAAGGGACCAAGCCTCGGGCCACACTGCACACGTGGCACCACTG
GGGTCAATACCACGGACAGGACGGGACCAAGGGACTTCTGCCCCTCCTCT
CTGTCCTCATGCAGGTGTCCCTGCCCCCTTCCCGCCCGCCCTCCACGGCG
GCGAGGACCTTCCAAGCGAGCGGGGGGGGGGGAGGACTGAGAGGGTGCGA
GGAAGTAACAAAGGGAGGGGACAGCGAGGGGATGGTGACGCAGAAGACCA
TCGACTGGGAAAAGGGGGGAGAGGAAGGGGGATTCGAAGGAAGGAAAATG
CGTGAGATGATGCGTGCACGCTGGCTGGCCATCAAGTCGCAAACTATTAA
GCAGGAGAAAGGGGAAGGCGGGGGGGGAGGGAAGGGAGGAGGGAACAGGA
CAGACGCCAGTCCTTCGGACGAAGAGCGGATGCTGACCTTTCTGCGCGTG
GGCAAGGGAATAAGCCATTGTGGACCGGCGTGCTGCACGATCGGCTTCCA
CCGCGACGCGGGCGTCTCAGTAGATGTTAATGAAAGGTTCGAGAACAGGT
TCATGTCCAGGAACTCCCTGCAAGCCTCCACCCTGATCCCCCCCCTGCTG
TGGCAGCAATGCATCGCCTCGGAGTCCCGAGATGCGTACGTGGACATCTT
TCTTAACCTGGTCTTTGGACCCTCACCGGTGCCAACGGAGGTCCGCTCCG
AGCTTTTGGTACAAGATCGAGGAGGCGTCATTGTCCCCGCCCGGGTGTGC
CTTCGGTACTTTGTCTCTGACAACGGGAATATGCACGCAATAATGCTCGC
CATTGAGCCCTACAGATAA

protein sequence of rna5497

>rna5497-protein ID=rna5497-protein|Name=rna5497|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MKILESSPGHPCKDDVPRSQSKREGGENPQKEKENSNDHKVDREKLIASL
DRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAA
LQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGF
LCIPQNRGPGRPAKWRLYLADEDALDSSSLWAGQARTMIRQGCKLEPPAL
PPSLPSSFHASTYRPDMSLPPPMLPQLRGPSSSSSSSSSSSSPCLPSSYP
STPLPLHPSVKKRERSLDEREEHLLAARCLKSLKKVQHFPPHPPALPPSG
LGDLSYTTCPPRYNADGFVYNRKKYPGADLPGMGVYYNGDIQPHHNPSTR
SGPSFSPCWYPSFQHAVAPSLPAYHPAALPDHPSYHMPWGGMAPSYGPRP
ALSAPFLPTPSWDGRRGR

mRNA from alignment at CM002466.1:104796..107196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5497 ID=rna5497|Name=rna5497|organism=Nannochloropsis gaditana|type=mRNA|length=2401bp|location=Sequence derived from alignment at CM002466.1:104796..107196+ (Nannochloropsis gaditana)
AAACCGAAGCGTTGGCGACATGTTGTGCTATTTTGCGGAGATTTTTCATG
TAAATGTTCCCCCTTTCTGCTAGGTCGACCCGTTCGATTGGCCGAAGAGC
GCCCGTCAATTACCGGATAATATGGGCGTCCGTAATTACTCTTCCGAGGC
AATACCACAAACTTACGGACATATAAACAATTCTTAAGACAGGTTACAAG
TATCAAACATGAAAATTTTGGAGTCTTCTCCTGGGCATCCATGTAAAGAC
GATGTGCCACGCTCCCAGAGtaagcgggaaggaggagaaaacccacaaaa
ggagaaggaaaactcGAACGACCACAAGGTGGACAGGGAAAAACTGATTG
CTTCTTTAGATCGCAGTGTAGGTGGGCTACATGAGGTGAAGGgcggaaaa
gaggggagggatgaccTGCAGGGAGACACCCGGCCCATGACGTCCGAAGC
CGTCTTCCCAGAGGGAAAGCATGCTGACGAGTGGGACGACGAAAGCCAGC
ATGCAGCACTACAAGGCGTTGCGACAGAGAACAAGGATGACAAGAAGAAG
CCTAAATACCAGGGTCCCCGAGGACGGGCCTGTTTGGAGTGCAAGATGAG
TAAGGTGCGTGGGAAGCGCAGGACAGGTCTCATTGCCTGAACGGCGGGCa
gggcgagaagaaaagggctTAATGACCTTGAGCATGTGATATCAGTCTAC
ATCCCAACCCACCCTTTTCTTCgacctgctctccttcctctctcccaatT
CGACctgctcatcttcctctctcccaatTCCTCAGGTCAAATGCGACAGG
AAGCAACCCCATTGTACCAGGTGCGTCAGTCATGGCTTCTTGTGTATACC
GCAAAACCGAGGGCCCGGTCGCCCTGCCAAATGGAGgtaaggaagggggg
aaatggggaaaggaaaagagggaggagggcatcggGGACGTGCGGAAGCA
GACAAGCTATGAAGCGAGGCTATCGCTCCCTCATACCATGAGGTATCCAA
TCTAGACGCTCACACATACAAGCATTACCttcgtctttttctcctccgtg
TAACAGGCTATATCTCGCCGACGAAGATGCCTTGGACAGCAGCAGTCTTT
GGGCGGGGCAGGCACGCACCATGATTCGCCAAGGCTGCAAGCTGgagccg
cccgccctccctccctccctcccttcctcctttcatgCCTCCACCTACCG
TCCCGACAtgtccctgcccccgcccatgTTGCCGCAGTTACGTgggccct
cctcttcgtcctcctcgtcgtcttcgtcgtcctccccatgcctcccctcc
tcttacccctccacccccctgccgctccatccctccgtcAAAAAGCGGGA
GCGGTCCCTCGATGAGGTAAGTATCCTGTcatccgtcctccccccctccc
ccctttcgccGGAGTCTATgacgctccttccccttggtCCCTTTCCTCAC
CCCTTTTTATGCactccaccaccttggcTCCCTCTTGGAGCTATATCCAC
TCAgttctcctctctctctctctctcttcccccctccttttacTATCAGA
GGGAAGAACATTTGCTTGCGGCCCGTTGCCTCAAGTCCTTGAAAAAAGTG
CaacattttcctccccatcctcctgccctccccccctccggccttGGTGA
CCTCTCGTACACGACCTGCCCGCCCAGATATAACGCTGACGGCTTCGTGT
ACAACCGGAAGAAGTATCCGGGTGCCGATCTACCTGGAATGGGCGTTTAC
TACAACGGTGACATTCAACCGCACCATAACCCATCGACACGAAGTgggcc
ctctttctctccctgctgGTACCCATCCTTCCAACACGCcgtggctccct
ccctcccagcgtACCATCCTGCGGCTCTGCCTGACCACCCTTCGTATCAC
ATGCCCTGGGGGGGCATGGCTCCCTCTTATGGGCCGCGCCCGGCCTTGtc
cgctcctttcctgccgACCCCTTCGTGGGATGGACGGCGGGGGCGATAAT
TCCTGCTCCTGTTGCCACTCCTACGTACTGCTGTTCGTCCGAATGCAAAC
GTCGTGAAGTGTGTAATATGCAAAAATGATAAGATACGACGGTGTTCACA
AGCATATGTTGCTTGTGCCCAGTCTGTGCGCCGCGCGACGTCTTCAGATA
GAGAAAATGACCCTTGGGGAAGATTCATAACATCGGTAGCATTTTTGAAA
GCTACTCGTGTGTTATTGGAGAGTGGCACGTTTGACGTTGATAGCCATAA
GGGCACTTTCTCCACAGAATTAGAAAAGCGTCATGAATTTCGAAAGTATT
AGCTTTGACGCAGACATATAAGTAAAGATATACTGTCTTCTAGGAAGGTG
GCATGTTTCGCTAGACGAAGTTAAATGGGAATCTTACAGTGCACCTCCTG
G

Coding sequence (CDS) from alignment at CM002466.1:104796..107196+

>rna5497 ID=rna5497|Name=rna5497|organism=Nannochloropsis gaditana|type=CDS|length=5028bp|location=Sequence derived from alignment at CM002466.1:104796..107196+ (Nannochloropsis gaditana)
ATGAAAATTTTGGAGTCTTCTCCTGGGCATCCATGTAAAGACGATGTGCC
ACGCTCCCAGAGtaagcgggaaggaggagaaaacccacaaaaggagaagg
aaaactcGAACGACCACAAGGTGGACAGGGAAAAACTGATTGCTTCTTTA
GATCGCAGTGTAGGTGGGCTACATGAGGTGAAGGgcggaaaagaggggag
ggatgaccTGCAGGGAGACACCCGGCCCATGACGTCCGAAGCCGTCTTCC
CAGAGGGAAAGCATGCTGACGAGTGGGACGACGAAAGCCAGCATGCAGCA
CTACAAGGCGTTGCGACAGAGAACAAGGATGACAAGAAGAAGCCTAAATA
CCAGGGTCCCCGAGGACGGGCCTGTTTGGAGTGCAAGATGAGTAAGGTCA
AATGCGACAGGAAGCAACCCCATTGTACCAGGTGCGTCAGTCATGGCTTC
TTGTGTATACCGCAAAACCGAGGGCCCGGTCGCCCTGCCAAATGGAGGCT
ATATCTCGCCGACGAAGATGCCTTGGACAGCAGCAGTCTTTGGGCGGGGC
AGGCACGCACCATGATTCGCCAAGGCTGCAAGCTGgagccgcccgccctc
cctccctccctcccttcctcctttcatgCCTCCACCTACCGTCCCGACAt
gtccctgcccccgcccatgTTGCCGCAGTTACGTgggccctcctcttcgt
cctcctcgtcgtcttcgtcgtcctccccatgcctcccctcctcttacccc
tccacccccctgccgctccatccctccgtcAAAAAGCGGGAGCGGTCCCT
CGATGAGAGGGAAGAACATTTGCTTGCGGCCCGTTGCCTCAAGTCCTTGA
AAAAAGTGCaacattttcctccccatcctcctgccctccccccctccggc
cttGGTGACCTCTCGTACACGACCTGCCCGCCCAGATATAACGCTGACGG
CTTCGTGTACAACCGGAAGAAGTATCCGGGTGCCGATCTACCTGGAATGG
GCGTTTACTACAACGGTGACATTCAACCGCACCATAACCCATCGACACGA
AGTgggccctctttctctccctgctgGTACCCATCCTTCCAACACGCcgt
ggctccctccctcccagcgtACCATCCTGCGGCTCTGCCTGACCACCCTT
CGTATCACATGCCCTGGGGGGGCATGGCTCCCTCTTATGGGCCGCGCCCG
GCCTTGtccgctcctttcctgccgACCCCTTCGTGGGATGGACGGCGGGG
GCGATAAATGAAAATTTTGGAGTCTTCTCCTGGGCATCCATGTAAAGACG
ATGTGCCACGCTCCCAGAGtaagcgggaaggaggagaaaacccacaaaag
gagaaggaaaactcGAACGACCACAAGGTGGACAGGGAAAAACTGATTGC
TTCTTTAGATCGCAGTGTAGGTGGGCTACATGAGGTGAAGGgcggaaaag
aggggagggatgaccTGCAGGGAGACACCCGGCCCATGACGTCCGAAGCC
GTCTTCCCAGAGGGAAAGCATGCTGACGAGTGGGACGACGAAAGCCAGCA
TGCAGCACTACAAGGCGTTGCGACAGAGAACAAGGATGACAAGAAGAAGC
CTAAATACCAGGGTCCCCGAGGACGGGCCTGTTTGGAGTGCAAGATGAGT
AAGGTCAAATGCGACAGGAAGCAACCCCATTGTACCAGGTGCGTCAGTCA
TGGCTTCTTGTGTATACCGCAAAACCGAGGGCCCGGTCGCCCTGCCAAAT
GGAGGCTATATCTCGCCGACGAAGATGCCTTGGACAGCAGCAGTCTTTGG
GCGGGGCAGGCACGCACCATGATTCGCCAAGGCTGCAAGCTGgagccgcc
cgccctccctccctccctcccttcctcctttcatgCCTCCACCTACCGTC
CCGACAtgtccctgcccccgcccatgTTGCCGCAGTTACGTgggccctcc
tcttcgtcctcctcgtcgtcttcgtcgtcctccccatgcctcccctcctc
ttacccctccacccccctgccgctccatccctccgtcAAAAAGCGGGAGC
GGTCCCTCGATGAGAGGGAAGAACATTTGCTTGCGGCCCGTTGCCTCAAG
TCCTTGAAAAAAGTGCaacattttcctccccatcctcctgccctcccccc
ctccggccttGGTGACCTCTCGTACACGACCTGCCCGCCCAGATATAACG
CTGACGGCTTCGTGTACAACCGGAAGAAGTATCCGGGTGCCGATCTACCT
GGAATGGGCGTTTACTACAACGGTGACATTCAACCGCACCATAACCCATC
GACACGAAGTgggccctctttctctccctgctgGTACCCATCCTTCCAAC
ACGCcgtggctccctccctcccagcgtACCATCCTGCGGCTCTGCCTGAC
CACCCTTCGTATCACATGCCCTGGGGGGGCATGGCTCCCTCTTATGGGCC
GCGCCCGGCCTTGtccgctcctttcctgccgACCCCTTCGTGGGATGGAC
GGCGGGGGCGATAAATGAAAATTTTGGAGTCTTCTCCTGGGCATCCATGT
AAAGACGATGTGCCACGCTCCCAGAGtaagcgggaaggaggagaaaaccc
acaaaaggagaaggaaaactcGAACGACCACAAGGTGGACAGGGAAAAAC
TGATTGCTTCTTTAGATCGCAGTGTAGGTGGGCTACATGAGGTGAAGGgc
ggaaaagaggggagggatgaccTGCAGGGAGACACCCGGCCCATGACGTC
CGAAGCCGTCTTCCCAGAGGGAAAGCATGCTGACGAGTGGGACGACGAAA
GCCAGCATGCAGCACTACAAGGCGTTGCGACAGAGAACAAGGATGACAAG
AAGAAGCCTAAATACCAGGGTCCCCGAGGACGGGCCTGTTTGGAGTGCAA
GATGAGTAAGGTCAAATGCGACAGGAAGCAACCCCATTGTACCAGGTGCG
TCAGTCATGGCTTCTTGTGTATACCGCAAAACCGAGGGCCCGGTCGCCCT
GCCAAATGGAGGCTATATCTCGCCGACGAAGATGCCTTGGACAGCAGCAG
TCTTTGGGCGGGGCAGGCACGCACCATGATTCGCCAAGGCTGCAAGCTGg
agccgcccgccctccctccctccctcccttcctcctttcatgCCTCCACC
TACCGTCCCGACAtgtccctgcccccgcccatgTTGCCGCAGTTACGTgg
gccctcctcttcgtcctcctcgtcgtcttcgtcgtcctccccatgcctcc
cctcctcttacccctccacccccctgccgctccatccctccgtcAAAAAG
CGGGAGCGGTCCCTCGATGAGAGGGAAGAACATTTGCTTGCGGCCCGTTG
CCTCAAGTCCTTGAAAAAAGTGCaacattttcctccccatcctcctgccc
tccccccctccggccttGGTGACCTCTCGTACACGACCTGCCCGCCCAGA
TATAACGCTGACGGCTTCGTGTACAACCGGAAGAAGTATCCGGGTGCCGA
TCTACCTGGAATGGGCGTTTACTACAACGGTGACATTCAACCGCACCATA
ACCCATCGACACGAAGTgggccctctttctctccctgctgGTACCCATCC
TTCCAACACGCcgtggctccctccctcccagcgtACCATCCTGCGGCTCT
GCCTGACCACCCTTCGTATCACATGCCCTGGGGGGGCATGGCTCCCTCTT
ATGGGCCGCGCCCGGCCTTGtccgctcctttcctgccgACCCCTTCGTGG
GATGGACGGCGGGGGCGATAAATGAAAATTTTGGAGTCTTCTCCTGGGCA
TCCATGTAAAGACGATGTGCCACGCTCCCAGAGtaagcgggaaggaggag
aaaacccacaaaaggagaaggaaaactcGAACGACCACAAGGTGGACAGG
GAAAAACTGATTGCTTCTTTAGATCGCAGTGTAGGTGGGCTACATGAGGT
GAAGGgcggaaaagaggggagggatgaccTGCAGGGAGACACCCGGCCCA
TGACGTCCGAAGCCGTCTTCCCAGAGGGAAAGCATGCTGACGAGTGGGAC
GACGAAAGCCAGCATGCAGCACTACAAGGCGTTGCGACAGAGAACAAGGA
TGACAAGAAGAAGCCTAAATACCAGGGTCCCCGAGGACGGGCCTGTTTGG
AGTGCAAGATGAGTAAGGTCAAATGCGACAGGAAGCAACCCCATTGTACC
AGGTGCGTCAGTCATGGCTTCTTGTGTATACCGCAAAACCGAGGGCCCGG
TCGCCCTGCCAAATGGAGGCTATATCTCGCCGACGAAGATGCCTTGGACA
GCAGCAGTCTTTGGGCGGGGCAGGCACGCACCATGATTCGCCAAGGCTGC
AAGCTGgagccgcccgccctccctccctccctcccttcctcctttcatgC
CTCCACCTACCGTCCCGACAtgtccctgcccccgcccatgTTGCCGCAGT
TACGTgggccctcctcttcgtcctcctcgtcgtcttcgtcgtcctcccca
tgcctcccctcctcttacccctccacccccctgccgctccatccctccgt
cAAAAAGCGGGAGCGGTCCCTCGATGAGAGGGAAGAACATTTGCTTGCGG
CCCGTTGCCTCAAGTCCTTGAAAAAAGTGCaacattttcctccccatcct
cctgccctccccccctccggccttGGTGACCTCTCGTACACGACCTGCCC
GCCCAGATATAACGCTGACGGCTTCGTGTACAACCGGAAGAAGTATCCGG
GTGCCGATCTACCTGGAATGGGCGTTTACTACAACGGTGACATTCAACCG
CACCATAACCCATCGACACGAAGTgggccctctttctctccctgctgGTA
CCCATCCTTCCAACACGCcgtggctccctccctcccagcgtACCATCCTG
CGGCTCTGCCTGACCACCCTTCGTATCACATGCCCTGGGGGGGCATGGCT
CCCTCTTATGGGCCGCGCCCGGCCTTGtccgctcctttcctgccgACCCC
TTCGTGGGATGGACGGCGGGGGCGATAA

Synonyms

Publications