EWM25188.1, cds5483 (CDS) Nannochloropsis gaditana

Overview
NameEWM25188.1
Unique Namecds5483
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:105004..105399 +
Alignment locationCM002466.1:105581..105681 +
Alignment locationCM002466.1:105852..106161 +
Alignment locationCM002466.1:106345..106794 +

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Properties
Property NameValue
Protein idEWM25188.1
Productc6 finger domain protein
Orig transcript idgnl|cribi|Naga_100146g3.3716.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:105004..105399 +
CM002466.1supercontigCM002466.1:105581..105681 +
CM002466.1supercontigCM002466.1:105852..106161 +
CM002466.1supercontigCM002466.1:106345..106794 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM25188.1 vs. NCBI_GenBank
Match: gi|585106850|gb|EWM25188.1| (c6 finger domain protein [Nannochloropsis gaditana])

HSP 1 Score: 849.736 bits (2194), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MKILESSPGHPCKDDVPRSQSKREGGENPQKEKENSNDHKVDREKLIASLDRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAALQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLADEDALDSSSLWAGQARTMIRQGCKLEPPALPPSLPSSFHASTYRPDMSLPPPMLPQLRGPSSSSSSSSSSSSPCLPSSYPSTPLPLHPSVKKRERSLDEREEHLLAARCLKSLKKVQHFPPHPPALPPSGLGDLSYTTCPPRYNADGFVYNRKKYPGADLPGMGVYYNGDIQPHHNPSTRSGPSFSPCWYPSFQHAVAPSLPAYHPAALPDHPSYHMPWGGMAPSYGPRPALSAPFLPTPSWDGRRGR 418
            MKILESSPGHPCKDDVPRSQSKREGGENPQKEKENSNDHKVDREKLIASLDRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAALQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLADEDALDSSSLWAGQARTMIRQGCKLEPPALPPSLPSSFHASTYRPDMSLPPPMLPQLRGPSSSSSSSSSSSSPCLPSSYPSTPLPLHPSVKKRERSLDEREEHLLAARCLKSLKKVQHFPPHPPALPPSGLGDLSYTTCPPRYNADGFVYNRKKYPGADLPGMGVYYNGDIQPHHNPSTRSGPSFSPCWYPSFQHAVAPSLPAYHPAALPDHPSYHMPWGGMAPSYGPRPALSAPFLPTPSWDGRRGR
Sbjct:    1 MKILESSPGHPCKDDVPRSQSKREGGENPQKEKENSNDHKVDREKLIASLDRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAALQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLADEDALDSSSLWAGQARTMIRQGCKLEPPALPPSLPSSFHASTYRPDMSLPPPMLPQLRGPSSSSSSSSSSSSPCLPSSYPSTPLPLHPSVKKRERSLDEREEHLLAARCLKSLKKVQHFPPHPPALPPSGLGDLSYTTCPPRYNADGFVYNRKKYPGADLPGMGVYYNGDIQPHHNPSTRSGPSFSPCWYPSFQHAVAPSLPAYHPAALPDHPSYHMPWGGMAPSYGPRPALSAPFLPTPSWDGRRGR 418          
BLAST of EWM25188.1 vs. NCBI_GenBank
Match: gi|585106848|gb|EWM25186.1| (hypothetical protein Naga_100146g7 [Nannochloropsis gaditana])

HSP 1 Score: 128.257 bits (321), Expect = 4.949e-29
Identity = 120/370 (32.43%), Postives = 164/370 (44.32%), Query Frame = 0
Query:   15 DVPRSQSKREGGENPQKEKENSNDHKVDREKLIASLDRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAALQGVATENKDDKK-----KPKYQ--------GPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLADEDALDSSS-LWAGQARTMIRQGCK--------------LEPPALPPSLPSSFHASTYRPDMSLPPPMLPQLRGPSSSSSSSSSSSSPCLPSSYPSTPLPLHPSVKKRERSLDEREEHLLAARCLKSLKKVQHF---PPHPPALPPSGLGDLSYTTCPPRYNADGFVYNRKKYPGADLPGMGVYYN----GDIQPHHNPST 349
            D+   +  +E G   + E++     +V     + +  R +    E KGG  GR+  +G T       V   GK A     ES+ A    +  +N++DK      K  Y+         PRG  CLECK SKVKCD+ QP CTRC  HGFLCIPQ RG GRPAKWR+YLA++ A+     LW   ++ ++    +              + P  LPPS      ++T    +   PP+   L  P S  +  SSS  P  P S  S+      S K++     E E+ L+AAR LK LK        PPHP     S     S+ +        G V +R  Y G    GMG YY+    G  QP+   ST
Sbjct:   34 DIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGAT-------VLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLAEDAAIQKEGDLWNAHSKALLLSAAQARSKEESISASSDPVRPAYLPPSGLPGLTSTTRGTSLPASPPLPASLSPPLSDITGVSSSFRP--PHSQFSSSFLTRASGKRQMPPCSEAEDRLVAARSLKCLKNGDASPFPPPHPIVGSTSRPVHPSFPSFATVAGTRGAV-DRNNYLGN---GMGGYYSHGYPGSTQPNRPYST 390          
BLAST of EWM25188.1 vs. NCBI_GenBank
Match: gi|585106853|gb|EWM25191.1| (c6 finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 2.431e-9
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   99 AALQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLA 170
            A  +G A    + ++ P+ +   GR CLECK SKVKCDRKQP CTRC      C+PQ R PGRP +W  Y++
Sbjct:   52 AQRKGDAPGGGEVQRAPRRRLRDGRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRP-RWGPYIS 122          
The following BLAST results are available for this feature:
BLAST of EWM25188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106850|gb|EWM25188.1|0.000e+0100.00c6 finger domain protein [Nannochloropsis gaditana... [more]
gi|585106848|gb|EWM25186.1|4.949e-2932.43hypothetical protein Naga_100146g7 [Nannochloropsi... [more]
gi|585106853|gb|EWM25191.1|2.431e-948.61c6 finger domain-containing protein [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5497rna5497Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications