rna5492, rna5492 (mRNA) Nannochloropsis gaditana

Overview
Namerna5492
Unique Namerna5492
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length351
Alignment locationCM002466.1:85952..86328 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103372g1.9039.mrna
Orig protein idgnl|cribi|Naga_103372g1.9039
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:85952..86328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103372g1gene5304Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5492rna5492-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25195.1cds5478Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5492 ID=rna5492|Name=rna5492|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGAGGGAGGCTCCATACGATGAGGCGTCCCACCAGCCGTGCCAATACGG
AGTGCTTTTGCACGATGGATTTCGACGGGGGCAAGAGGAGCGAGGGGATC
ATCTGCCTCGTCTGGTAGGAAGATCTCCGTTGCCTGAATCTGCTCGGGCG
GGAGGAGGGAGCTTGGAGAGGGAAGAAGGAGGAGACAAGGGCTTGACGCT
GCGAGAACGGTCGCGAACGACAAGGGGAAGCTCAAGCGTTCGACGATGTG
TGTATGCTCTCTGCCAGAGCTTTTATGGCAGGGTAAATTCGAAGCAAAAT
CAGGCAGTAAAAATTAAAAAAAAATTGCGTCGTCACTTCTCTCATGCGTA
A
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protein sequence of rna5492

>rna5492-protein ID=rna5492-protein|Name=rna5492|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MGKGERTRLVAALRRRRLQEAEGREGGREGGKEGLTWIYKVSSLQFLRIF
PSEASMLQTLSVYFPSSLSPSLPSSLGSSPSLSLTPTHWCMHLSCVCV
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mRNA from alignment at CM002466.1:85952..86328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5492 ID=rna5492|Name=rna5492|organism=Nannochloropsis gaditana|type=mRNA|length=377bp|location=Sequence derived from alignment at CM002466.1:85952..86328- (Nannochloropsis gaditana)
ATGGGGAAAGGAGAAAGGACACGATTGGTCGCTGCCCTCCGGCGACGGCG
GCTCCAGGAGGCAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGG
GACTGACCTGGATCTACAAGGTGTCGAGTTTGCAATTCCTTCGGATTTTT
CCTTCGGAAGCCAGCATGCTCCAGACCCTCTCTGTCTACTTCCCTTCCTC
CCTCTCCCCCTCCCTCCCGTCCTCCCTCGGTTCCTCCCCTTCCTTGTCCC
TCACGCCCACGCACTGGTGTCTAGACGAGGACGAGGACGGGAGGGAGGGC
GGGAGGGAGGGGGGGAAGGAGGGCGGGAAGGGCGTGAAAGAGCATCAGGT
ATGCATTTGTCGTGTGTCTGTGTCTGA
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Coding sequence (CDS) from alignment at CM002466.1:85952..86328-

>rna5492 ID=rna5492|Name=rna5492|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002466.1:85952..86328- (Nannochloropsis gaditana)
GTATGCATTTGTCGTGTGTCTGTGTCTGAATGGGGAAAGGAGAAAGGACA
CGATTGGTCGCTGCCCTCCGGCGACGGCGGCTCCAGGAGGCAGAAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAAGGAGGGACTGACCTGGATCTACAAGG
TGTCGAGTTTGCAATTCCTTCGGATTTTTCCTTCGGAAGCCAGCATGCTC
CAGACCCTCTCTGTCTACTTCCCTTCCTCCCTCTCCCCCTCCCTCCCGTC
CTCCCTCGGTTCCTCCCCTTCCTTGTCCCTCACGCCCACGCACTGGTGTA
TGCATTTGTCGTGTGTCTGTGTCTGAATGGGGAAAGGAGAAAGGACACGA
TTGGTCGCTGCCCTCCGGCGACGGCGGCTCCAGGAGGCAGAAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAGGAGGGACTGACCTGGATCTACAAGGTGT
CGAGTTTGCAATTCCTTCGGATTTTTCCTTCGGAAGCCAGCATGCTCCAG
ACCCTCTCTGTCTACTTCCCTTCCTCCCTCTCCCCCTCCCTCCCGTCCTC
CCTCGGTTCCTCCCCTTCCTTGTCCCTCACGCCCACGCACTGGT
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Synonyms
Publications