EWM25195.1, cds5478 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25195.1
Unique Name	cds5478
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:86061..86328 -
Alignment location	CM002466.1:85952..85980 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25195.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_103372g1.9039.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:86061..86328 -
CM002466.1	supercontig	CM002466.1:85952..85980 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM25195.1 vs. NCBI_GenBank
Match: gi|585106863|gb|EWM25195.1| (hypothetical protein Naga_103372g1 [Nannochloropsis gaditana])

HSP 1 Score: 196.052 bits (497), Expect = 1.634e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MGKGERTRLVAALRRRRLQEAEGREGGREGGKEGLTWIYKVSSLQFLRIFPSEASMLQTLSVYFPSSLSPSLPSSLGSSPSLSLTPTHWCMHLSCVCV 98
            MGKGERTRLVAALRRRRLQEAEGREGGREGGKEGLTWIYKVSSLQFLRIFPSEASMLQTLSVYFPSSLSPSLPSSLGSSPSLSLTPTHWCMHLSCVCV
Sbjct:    1 MGKGERTRLVAALRRRRLQEAEGREGGREGGKEGLTWIYKVSSLQFLRIFPSEASMLQTLSVYFPSSLSPSLPSSLGSSPSLSLTPTHWCMHLSCVCV 98

The following BLAST results are available for this feature:

BLAST of EWM25195.1 vs. NCBI_GenBank

BLAST of EWM25195.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106863\|gb\|EWM25195.1\|	1.634e-63	100.00	hypothetical protein Naga_103372g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5492	rna5492	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications