rna549, rna549 (mRNA) Nannochloropsis gaditana

Overview
Namerna549
Unique Namerna549
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length918
Alignment locationCM002455.1:1371691..1372155 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g5.963.mrna
Orig protein idgnl|cribi|Naga_100541g5.963
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1371691..1372155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100541g5gene530Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna549rna549-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30126.1cds549Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna549 ID=rna549|Name=rna549|organism=Nannochloropsis gaditana|type=mRNA|length=918bp
ATGAGAGAAGTTTGCAGTTTGCGAGCGTACCAAAGTACGTATAAGGCACA
CCGCGAGGATGCGAGGATAAATCAACCGGGAACCTGGTGGCTGCGATGTA
GTATTTCCCCTCCCGCGCACCATTTGTGGACCGAAATCAGCGAGCAAGTC
GACCTCCCCCTGCCTGCCCCTGACCCTGACCCGGGCTTTTGGGAAAATAA
AGAAGAGAAATATGAGCGTGGCAGCATGCGTGACGATACACTCCTTGCGG
AAGACATGCAAGAGCAAATTCGGGCCATGCAGGAGGTCGTGCGCAAGCTG
GAATTTGAGATACAAGAAACCATGGAAGACTTGGAATTTCAGACGGCAGC
AGCGGAGGCGCGGCGCTTGCGGGCCGACCAGGCTGTCGCCACGTTGCACA
AAGACCAGAAACAAATGGTCTCGGCGGGGAAAAAACACGCGGCGTTGATC
GTGAAGTGGTGGCTGTGGGGGCTGCTGCTCGGGTGGCTGCTCGCCATCAT
TGTCTCCGCCCTCGTCTCTCCTGTCTTGGCCTTCATGGTGGTCATCCCCA
TCCTTGCCATCTTCCTGACCGTGGGCTACGCGTCCTCCAGCGTGGAGATG
AAGGTGTCTGCAAGCTCAGATCAGCTCCTTCATAACATAATTTCGTTGGA
CGCCGGGAAGTCTTTGGCCTCGATGGGTCCACTAAGCGGCTTCCACCGGC
CGTGGCGCCTCCTGTCGACCCGGCCCTCGACAAGATGGGCAGGAATCTAC
CAAGATTCGGAGCGCACACTGAACCTCAGAAGATTCGGGCCTAATGCAAC
ACATGCCATGGTCTCGACCGTCAACGGCCAATTGTTTGTAAAGGTGGGAA
CCCATCTGATGCGGGCGTCGCGGGGATCCCTGACGAGAAGCGGCGCGTCT
GCCTTGCCTTCACCTTAA
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protein sequence of rna549

>rna549-protein ID=rna549-protein|Name=rna549|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MGNGHNDRTVPAGMICPSHSLFPVLPARTLVGEWKGLRRNFPPCFHCFAP
GMEVAKARGPFHFPGIFPKGRGPSPSLATGSRPVVLSRRRGLPATWGFCW
LRRKGGNGATQAGSIEGCAGQGEGEEVGVGGKIKTGIRRGWEERGETKIF
IGLG
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mRNA from alignment at CM002455.1:1371691..1372155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna549 ID=rna549|Name=rna549|organism=Nannochloropsis gaditana|type=mRNA|length=465bp|location=Sequence derived from alignment at CM002455.1:1371691..1372155+ (Nannochloropsis gaditana)
ATGGGAAATGGCCACAACGACAGGACGGTTCCTGCGGGGATGATCTGCCC
ATCGcattccctttttcccgtACTACCTGCACGCACATTGGTGGGAGAAT
GGAAAGGGCTACGGAGGAATTTTCCTCCGTGCTTCCATTGTTTCGCGcca
gggatggaggtggcgaagGCCCGTGGGCCTTTCCATTTTCCGGGTATCTT
TCCGAAGGGCCGGGGGCCGAGCCCTTCTCTCGCCACCGGTTCCCGCCCGG
TGGTGTTGTCAAGAAGACGAGGCTTACCCGCAACATGGGGCTTCTGTTGG
CTGCgcagaaagggggggaatggcgCGACGCAGGCAGGGAGCATTGAGGG
TTGCgctgggcaaggggaaggggaggaagtgggggtAGGCGGGAAGATAA
AGACGGGGataaggagagggtgggaagaaagaggagagacgAAGATTTTT
ATCGGGTTGGGTTAg
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Coding sequence (CDS) from alignment at CM002455.1:1371691..1372155+

>rna549 ID=rna549|Name=rna549|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at CM002455.1:1371691..1372155+ (Nannochloropsis gaditana)
ATGGGAAATGGCCACAACGACAGGACGGTTCCTGCGGGGATGATCTGCCC
ATCGcattccctttttcccgtACTACCTGCACGCACATTGGTGGGAGAAT
GGAAAGGGCTACGGAGGAATTTTCCTCCGTGCTTCCATTGTTTCGCGcca
gggatggaggtggcgaagGCCCGTGGGCCTTTCCATTTTCCGGGTATCTT
TCCGAAGGGCCGGGGGCCGAGCCCTTCTCTCGCCACCGGTTCCCGCCCGG
TGGTGTTGTCAAGAAGACGAGGCTTACCCGCAACATGGGGCTTCTGTTGG
CTGCgcagaaagggggggaatggcgCGACGCAGGCAGGGAGCATTGAGGG
TTGCgctgggcaaggggaaggggaggaagtgggggtAGGCGGGAAGATAA
AGACGGGGataaggagagggtgggaagaaagaggagagacgAAGATTTTT
ATCGGGTTGGGTTAg
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Synonyms
Publications