rna5489, rna5489 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5489
Unique Name	rna5489
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	240
Alignment location	CM002466.1:79356..80803 +

Link to JBrowse

Properties


Property Name	Value
Product	histone h3
Orig transcript id	gnl\|cribi\|Naga_100722g1.10566.mrna
Orig protein id	gnl\|cribi\|Naga_100722g1.10566
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:79356..80803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100722g1	gene5301	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5489	rna5489-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25200.1	cds5475	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:79356..80803+
coding sequence from alignment at CM002466.1:79356..80803+

mRNA sequence

>rna5489 ID=rna5489|Name=rna5489|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGCTCGCATCTATCATCTCGTATCACATTAAAAATTCAAGACTTGTGAT
GCATTTCTTAGATCGGGATATAAGTGAAATGTTTAGATACTTTTATGGTT
TCCTCATCGACCCTAGTTGGCAAAAAGCACTTCGTCCCGTGTGCATAAGA
CACTTCGTCCGAAAGAGTAAAGAGAAAAGAGAACGTAGGTCATGGGAAGA
GTATTGCATGAACATCAAAGACAAGAATCTGAAGAAATAG

protein sequence of rna5489

>rna5489-protein ID=rna5489-protein|Name=rna5489|organism=Nannochloropsis gaditana|type=polypeptide|length=257bp
MNLCMFLWSFWPAWLVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQ
LHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKS
TGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTEL
LIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLC
AIHAKRVTIMPKDVQLARRIRGERAARREMPAFGSNQGRHEAALRAGGRG
GTQLCTW

mRNA from alignment at CM002466.1:79356..80803+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5489 ID=rna5489|Name=rna5489|organism=Nannochloropsis gaditana|type=mRNA|length=1448bp|location=Sequence derived from alignment at CM002466.1:79356..80803+ (Nannochloropsis gaditana)
ATGAATTTATGCATGTTTTTGTGGTCATTTTGGCCTGCCTGGCTGGTTTT
TAGGTCCTGTGTATACAAGGTAGACCCGACCCTTTGGCCATGTCCCTCGT
GTTTACTACTCATTGCGCTGAACCAAAGTACCCGCAACTTCGTACAACAA
TTACACTCGTCGCAACAAGATGATCGTTTGATGGAAACACTCACATGGTG
GTGCGCAAGGCGAATCAAAGCGTTATCTGGGTGTTTGCCAAAAGCTGTCG
CCCCTCCGTTCAACTAACCTTCCCACTCGCTCTGCCCTTCCTACAACTCA
AAACTTCACCAGCTCTTTGTTTCCCCGGAAGCTATGGCTCGCACCAAGCA
AACAGCACGAAAATCGACAGGTGGGAAAGCGCCTCGCAAGCAGTTGGCCA
CCAAGGtaggtcgggagggagggcagcaaggaggaggattatGGTGGGGT
CCGGCAAGCCAAGAAGACACCGCGAGCCGCGCGTTTTTGTGGATGATCGC
GGGACTGAGCAACGCACTCGTATCCACCAACCTTCCAATCCAGGCGGCCC
GCAAATCAGCGCCGACGGCAGGGGGTGTGAAGAAACCTCATCGGTACCGG
CCTGGAACGGTCGCCTTGCGGGAGATTCGCAAGTACCAAAAGAGCACCGA
GCTCCTCATTCGGAAGCTGCCATTCCAGGTgcgtctccctccgctctttt
tttcttgttcTCCCACGTCTCTTTTCCACGCTTTCATTTGTCTTCTGGGG
GCGCTGTATGTTCCGTTGACCTTGCAAACCTGGAAGCCagctctctcttc
ctccctccctccctccctccctccccctgtccttcGTCCCACCTTCTCGT
GTGCCTTCCTCTGTCGCTCaaccccctctctccatccctcagCGCCTCGT
CCGGGAGATCGCACAGGACTTCAAGACCGACCTGCGTTTCCAGAGCACAG
CCATTTTGGCGCTTCAGGAGGCTACAGAGGCTTACCTCGTCGGTCTTTTT
GAGGATACGGTacgtccccctctctcttttcttccctccctcctttctgc
ctattttctcttccattccAGTACCTCAGGGGGGTGTAACAGTCCTTCCC
TCATAgtctccccctttttctccccgccctccctccttacctccctccct
tttgaCAGAACCTCTGTGCCATCCACGCCAAGCGTGTGACGATCATGCCT
AAAGACGTCCAGCTTGCGCGTCGTATCCGAGGAGAACGCGCGTAATGCGT
GTGGGGGGGCTATTGCGTGGCGTCGGTGGTTTTCGGTGGTTTTTTCTTAA
AGGGAAATATTCTTCCCTAAACATGtccggggatggaggaacgcatagag
cgaggagggagatgcctGCTTTTGGTTCGAATCAAGGGAGACATGAAGCA
GCAttgagggcgggagggagagggggaacgCAGCTTTGTACATGGTGA

Coding sequence (CDS) from alignment at CM002466.1:79356..80803+

>rna5489 ID=rna5489|Name=rna5489|organism=Nannochloropsis gaditana|type=CDS|length=4644bp|location=Sequence derived from alignment at CM002466.1:79356..80803+ (Nannochloropsis gaditana)
ATGAATTTATGCATGTTTTTGTGGTCATTTTGGCCTGCCTGGCTGGTTTT
TAGGTCCTGTGTATACAAGGTAGACCCGACCCTTTGGCCATGTCCCTCGT
GTTTACTACTCATTGCGCTGAACCAAAGTACCCGCAACTTCGTACAACAA
TTACACTCGTCGCAACAAGATGATCGTTTGATGGAAACACTCACATGGTG
GTGCGCAAGGCGAATCAAAGCGTTATCTGGGTGTTTGCCAAAAGCTCTCT
TTGTTTCCCCGGAAGCTATGGCTCGCACCAAGCAAACAGCACGAAAATCG
ACAGGTGGGAAAGCGCCTCGCAAGCAGTTGGCCACCAAGGCGGCCCGCAA
ATCAGCGCCGACGGCAGGGGGTGTGAAGAAACCTCATCGGTACCGGCCTG
GAACGGTCGCCTTGCGGGAGATTCGCAAGTACCAAAAGAGCACCGAGCTC
CTCATTCGGAAGCTGCCATTCCAGCGCCTCGTCCGGGAGATCGCACAGGA
CTTCAAGACCGACCTGCGTTTCCAGAGCACAGCCATTTTGGCGCTTCAGG
AGGCTACAGAGGCTTACCTCGTCGGTCTTTTTGAGGATACGAACCTCTGT
GCCATCCACGCCAAGCGTGTGACGATCATGCCTAAAGACGTCCAGCTTGC
GCGTCGTATCCGAGGAGAACGCGCagcgaggagggagatgcctGCTTTTG
GTTCGAATCAAGGGAGACATGAAGCAGCAttgagggcgggagggagaggg
ggaacgCAGCTTTGTACATGGTGAATGAATTTATGCATGTTTTTGTGGTC
ATTTTGGCCTGCCTGGCTGGTTTTTAGGTCCTGTGTATACAAGGTAGACC
CGACCCTTTGGCCATGTCCCTCGTGTTTACTACTCATTGCGCTGAACCAA
AGTACCCGCAACTTCGTACAACAATTACACTCGTCGCAACAAGATGATCG
TTTGATGGAAACACTCACATGGTGGTGCGCAAGGCGAATCAAAGCGTTAT
CTGGGTGTTTGCCAAAAGCTCTCTTTGTTTCCCCGGAAGCTATGGCTCGC
ACCAAGCAAACAGCACGAAAATCGACAGGTGGGAAAGCGCCTCGCAAGCA
GTTGGCCACCAAGGCGGCCCGCAAATCAGCGCCGACGGCAGGGGGTGTGA
AGAAACCTCATCGGTACCGGCCTGGAACGGTCGCCTTGCGGGAGATTCGC
AAGTACCAAAAGAGCACCGAGCTCCTCATTCGGAAGCTGCCATTCCAGCG
CCTCGTCCGGGAGATCGCACAGGACTTCAAGACCGACCTGCGTTTCCAGA
GCACAGCCATTTTGGCGCTTCAGGAGGCTACAGAGGCTTACCTCGTCGGT
CTTTTTGAGGATACGAACCTCTGTGCCATCCACGCCAAGCGTGTGACGAT
CATGCCTAAAGACGTCCAGCTTGCGCGTCGTATCCGAGGAGAACGCGCag
cgaggagggagatgcctGCTTTTGGTTCGAATCAAGGGAGACATGAAGCA
GCAttgagggcgggagggagagggggaacgCAGCTTTGTACATGGTGAAT
GAATTTATGCATGTTTTTGTGGTCATTTTGGCCTGCCTGGCTGGTTTTTA
GGTCCTGTGTATACAAGGTAGACCCGACCCTTTGGCCATGTCCCTCGTGT
TTACTACTCATTGCGCTGAACCAAAGTACCCGCAACTTCGTACAACAATT
ACACTCGTCGCAACAAGATGATCGTTTGATGGAAACACTCACATGGTGGT
GCGCAAGGCGAATCAAAGCGTTATCTGGGTGTTTGCCAAAAGCTCTCTTT
GTTTCCCCGGAAGCTATGGCTCGCACCAAGCAAACAGCACGAAAATCGAC
AGGTGGGAAAGCGCCTCGCAAGCAGTTGGCCACCAAGGCGGCCCGCAAAT
CAGCGCCGACGGCAGGGGGTGTGAAGAAACCTCATCGGTACCGGCCTGGA
ACGGTCGCCTTGCGGGAGATTCGCAAGTACCAAAAGAGCACCGAGCTCCT
CATTCGGAAGCTGCCATTCCAGCGCCTCGTCCGGGAGATCGCACAGGACT
TCAAGACCGACCTGCGTTTCCAGAGCACAGCCATTTTGGCGCTTCAGGAG
GCTACAGAGGCTTACCTCGTCGGTCTTTTTGAGGATACGAACCTCTGTGC
CATCCACGCCAAGCGTGTGACGATCATGCCTAAAGACGTCCAGCTTGCGC
GTCGTATCCGAGGAGAACGCGCagcgaggagggagatgcctGCTTTTGGT
TCGAATCAAGGGAGACATGAAGCAGCAttgagggcgggagggagaggggg
aacgCAGCTTTGTACATGGTGAATGAATTTATGCATGTTTTTGTGGTCAT
TTTGGCCTGCCTGGCTGGTTTTTAGGTCCTGTGTATACAAGGTAGACCCG
ACCCTTTGGCCATGTCCCTCGTGTTTACTACTCATTGCGCTGAACCAAAG
TACCCGCAACTTCGTACAACAATTACACTCGTCGCAACAAGATGATCGTT
TGATGGAAACACTCACATGGTGGTGCGCAAGGCGAATCAAAGCGTTATCT
GGGTGTTTGCCAAAAGCTCTCTTTGTTTCCCCGGAAGCTATGGCTCGCAC
CAAGCAAACAGCACGAAAATCGACAGGTGGGAAAGCGCCTCGCAAGCAGT
TGGCCACCAAGGCGGCCCGCAAATCAGCGCCGACGGCAGGGGGTGTGAAG
AAACCTCATCGGTACCGGCCTGGAACGGTCGCCTTGCGGGAGATTCGCAA
GTACCAAAAGAGCACCGAGCTCCTCATTCGGAAGCTGCCATTCCAGCGCC
TCGTCCGGGAGATCGCACAGGACTTCAAGACCGACCTGCGTTTCCAGAGC
ACAGCCATTTTGGCGCTTCAGGAGGCTACAGAGGCTTACCTCGTCGGTCT
TTTTGAGGATACGAACCTCTGTGCCATCCACGCCAAGCGTGTGACGATCA
TGCCTAAAGACGTCCAGCTTGCGCGTCGTATCCGAGGAGAACGCGCagcg
aggagggagatgcctGCTTTTGGTTCGAATCAAGGGAGACATGAAGCAGC
AttgagggcgggagggagagggggaacgCAGCTTTGTACATGGTGAATGA
ATTTATGCATGTTTTTGTGGTCATTTTGGCCTGCCTGGCTGGTTTTTAGG
TCCTGTGTATACAAGGTAGACCCGACCCTTTGGCCATGTCCCTCGTGTTT
ACTACTCATTGCGCTGAACCAAAGTACCCGCAACTTCGTACAACAATTAC
ACTCGTCGCAACAAGATGATCGTTTGATGGAAACACTCACATGGTGGTGC
GCAAGGCGAATCAAAGCGTTATCTGGGTGTTTGCCAAAAGCTCTCTTTGT
TTCCCCGGAAGCTATGGCTCGCACCAAGCAAACAGCACGAAAATCGACAG
GTGGGAAAGCGCCTCGCAAGCAGTTGGCCACCAAGGCGGCCCGCAAATCA
GCGCCGACGGCAGGGGGTGTGAAGAAACCTCATCGGTACCGGCCTGGAAC
GGTCGCCTTGCGGGAGATTCGCAAGTACCAAAAGAGCACCGAGCTCCTCA
TTCGGAAGCTGCCATTCCAGCGCCTCGTCCGGGAGATCGCACAGGACTTC
AAGACCGACCTGCGTTTCCAGAGCACAGCCATTTTGGCGCTTCAGGAGGC
TACAGAGGCTTACCTCGTCGGTCTTTTTGAGGATACGAACCTCTGTGCCA
TCCACGCCAAGCGTGTGACGATCATGCCTAAAGACGTCCAGCTTGCGCGT
CGTATCCGAGGAGAACGCGCagcgaggagggagatgcctGCTTTTGGTTC
GAATCAAGGGAGACATGAAGCAGCAttgagggcgggagggagagggggaa
cgCAGCTTTGTACATGGTGAATGAATTTATGCATGTTTTTGTGGTCATTT
TGGCCTGCCTGGCTGGTTTTTAGGTCCTGTGTATACAAGGTAGACCCGAC
CCTTTGGCCATGTCCCTCGTGTTTACTACTCATTGCGCTGAACCAAAGTA
CCCGCAACTTCGTACAACAATTACACTCGTCGCAACAAGATGATCGTTTG
ATGGAAACACTCACATGGTGGTGCGCAAGGCGAATCAAAGCGTTATCTGG
GTGTTTGCCAAAAGCTCTCTTTGTTTCCCCGGAAGCTATGGCTCGCACCA
AGCAAACAGCACGAAAATCGACAGGTGGGAAAGCGCCTCGCAAGCAGTTG
GCCACCAAGGCGGCCCGCAAATCAGCGCCGACGGCAGGGGGTGTGAAGAA
ACCTCATCGGTACCGGCCTGGAACGGTCGCCTTGCGGGAGATTCGCAAGT
ACCAAAAGAGCACCGAGCTCCTCATTCGGAAGCTGCCATTCCAGCGCCTC
GTCCGGGAGATCGCACAGGACTTCAAGACCGACCTGCGTTTCCAGAGCAC
AGCCATTTTGGCGCTTCAGGAGGCTACAGAGGCTTACCTCGTCGGTCTTT
TTGAGGATACGAACCTCTGTGCCATCCACGCCAAGCGTGTGACGATCATG
CCTAAAGACGTCCAGCTTGCGCGTCGTATCCGAGGAGAACGCGCagcgag
gagggagatgcctGCTTTTGGTTCGAATCAAGGGAGACATGAAGCAGCAt
tgagggcgggagggagagggggaacgCAGCTTTGTACATGGTGA

Synonyms

Publications