EWM25200.1, cds5475 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25200.1
Unique Name	cds5475
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:79356..79601 +
Alignment location	CM002466.1:79668..79760 +
Alignment location	CM002466.1:79899..80033 +
Alignment location	CM002466.1:80248..80364 +
Alignment location	CM002466.1:80514..80596 +
Alignment location	CM002466.1:80704..80803 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25200.1
Product	histone h3
Orig transcript id	gnl\|cribi\|Naga_100722g1.10566.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:79356..79601 +
CM002466.1	supercontig	CM002466.1:79668..79760 +
CM002466.1	supercontig	CM002466.1:79899..80033 +
CM002466.1	supercontig	CM002466.1:80248..80364 +
CM002466.1	supercontig	CM002466.1:80514..80596 +
CM002466.1	supercontig	CM002466.1:80704..80803 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_core_D
IPR009072	Histone-fold
IPR000164	Histone_H3/CENP-A

Homology

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|585106873|gb|EWM25200.1| (histone h3 [Nannochloropsis gaditana])

HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0

Query:    1 MNLCMFLWSFWPAWLVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQLHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERAARREMPAFGSNQGRHEAALRAGGRGGTQLCTW 257
            MNLCMFLWSFWPAWLVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQLHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERAARREMPAFGSNQGRHEAALRAGGRGGTQLCTW
Sbjct:    1 MNLCMFLWSFWPAWLVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQLHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERAARREMPAFGSNQGRHEAALRAGGRGGTQLCTW 257

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|553192193|ref|XP_005855528.1| (histone H3 [Nannochloropsis gaditana CCMP526] >gi|422293522|gb|EKU20822.1| histone H3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 274.248 bits (700), Expect = 3.235e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|657808822|ref|XP_008331672.1| (PREDICTED: histone H3-like [Cynoglossus semilaevis])

HSP 1 Score: 272.322 bits (695), Expect = 8.924e-90
Identity = 137/168 (81.55%), Postives = 144/168 (85.71%), Query Frame = 0

Query:   64 LTWWCARRIKALSGCLPKALFVSP------EAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            +   CA  IKA  G   K  F         E MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   14 INRVCADAIKAARGASTKHYFSVEQREKYTETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 181

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|145349686|ref|XP_001419259.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144579490|gb|ABO97552.1| predicted protein [Ostreococcus lucimarinus CCE9901] >gi|693498678|emb|CEG01325.1| Histone core [Ostreococcus tauri])

HSP 1 Score: 270.396 bits (690), Expect = 1.160e-89
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|299470903|emb|CBN79887.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 270.396 bits (690), Expect = 1.225e-89
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|1062847140|ref|XP_017935682.1| (PREDICTED: histone H3-like [Manacus vitellinus])

HSP 1 Score: 273.092 bits (697), Expect = 3.502e-89
Identity = 141/211 (66.82%), Postives = 162/211 (76.78%), Query Frame = 0

Query:   15 LVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQLHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            L  R  V ++   ++     +L + L    R+ V     +++       + +   R+ ++     P AL V   AMARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   38 LARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRSR----PSALGVRLAAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 244

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|1049271741|ref|XP_017576147.1| (PREDICTED: histone H3-like, partial [Pygocentrus nattereri])

HSP 1 Score: 273.092 bits (697), Expect = 3.646e-89
Identity = 141/211 (66.82%), Postives = 161/211 (76.30%), Query Frame = 0

Query:   15 LVFRSCVYKVDPTLWPCPSCLLLIALNQSTRNFVQQLHSSQQDDRLMETLTWWCARRIKALSGCLPKALFVSPEAMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            L  R  V ++   ++     +L + L    R+ V     +++       + +   R+ +     LP AL V    MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   33 LARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR----TLPTALSVEFGTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 239

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|301090188|ref|XP_002895320.1| (histone H3.3 type 1 [Phytophthora infestans T30-4] >gi|301111702|ref|XP_002904930.1| histone H3.3 [Phytophthora infestans T30-4] >gi|675207001|ref|XP_008912385.1| histone a [Phytophthora parasitica INRA-310] >gi|675207011|ref|XP_008912390.1| histone a [Phytophthora parasitica INRA-310] >gi|695394692|ref|XP_009520961.1| hypothetical protein PHYSODRAFT_354087 [Phytophthora sojae] >gi|262095260|gb|EEY53312.1| histone H3.3 [Phytophthora infestans T30-4] >gi|262100482|gb|EEY58534.1| histone H3.3 type 1 [Phytophthora infestans T30-4] >gi|348685858|gb|EGZ25673.1| hypothetical protein PHYSODRAFT_354087 [Phytophthora sojae] >gi|567951376|gb|ETK77077.1| histone a [Phytophthora parasitica] >gi|567980039|gb|ETL30509.1| histone a [Phytophthora parasitica] >gi|568009555|gb|ETL83757.1| histone a [Phytophthora parasitica] >gi|568009583|gb|ETL83785.1| histone a [Phytophthora parasitica] >gi|568039460|gb|ETM36954.1| histone a [Phytophthora parasitica] >gi|568087477|gb|ETN02348.1| histone a [Phytophthora parasitica INRA-310] >gi|568087482|gb|ETN02353.1| histone a [Phytophthora parasitica INRA-310] >gi|570941404|gb|ETP06661.1| histone a [Phytophthora parasitica CJ01A1] >gi|570941409|gb|ETP06666.1| histone a [Phytophthora parasitica CJ01A1] >gi|570971669|gb|ETP34788.1| histone a [Phytophthora parasitica P10297] >gi|570971674|gb|ETP34793.1| histone a [Phytophthora parasitica P10297] >gi|953499835|emb|CEG38476.1| histone h3 [Plasmopara halstedii] >gi|1214708773|gb|OWZ20018.1| histone H3 [Phytophthora megakarya])

HSP 1 Score: 268.855 bits (686), Expect = 5.733e-89
Identity = 131/135 (97.04%), Postives = 135/135 (100.00%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGER 224
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+KTDLRFQSTAILALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKTDLRFQSTAILALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|224009486|ref|XP_002293701.1| (histone H3 [Thalassiosira pseudonana CCMP1335] >gi|220970373|gb|EED88710.1| histone H3 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 268.47 bits (685), Expect = 6.982e-89
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKST+LLIRK PFQRLVREIAQDFKTDLRFQSTA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKAPFQRLVREIAQDFKTDLRFQSTAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of EWM25200.1 vs. NCBI_GenBank
Match: gi|552812761|ref|XP_005843780.1| (hypothetical protein CHLNCDRAFT_59160 [Chlorella variabilis] >gi|307103418|gb|EFN51678.1| hypothetical protein CHLNCDRAFT_59160 [Chlorella variabilis])

HSP 1 Score: 268.47 bits (685), Expect = 7.456e-89
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0

Query:   90 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEATEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 225
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+LALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of EWM25200.1 vs. NCBI_GenBank

BLAST of EWM25200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585106873\|gb\|EWM25200.1\|	0.000e+0	100.00	histone h3 [Nannochloropsis gaditana]	[more]
gi\|553192193\|ref\|XP_005855528.1\|	3.235e-91	100.00	histone H3 [Nannochloropsis gaditana CCMP526] >gi\|...	[more]
gi\|657808822\|ref\|XP_008331672.1\|	8.924e-90	81.55	PREDICTED: histone H3-like [Cynoglossus semilaevis...	[more]
gi\|145349686\|ref\|XP_001419259.1\|	1.160e-89	97.06	predicted protein [Ostreococcus lucimarinus CCE990...	[more]
gi\|299470903\|emb\|CBN79887.1\|	1.225e-89	97.79	conserved unknown protein [Ectocarpus siliculosus]	[more]
gi\|1062847140\|ref\|XP_017935682.1\|	3.502e-89	66.82	PREDICTED: histone H3-like [Manacus vitellinus]	[more]
gi\|1049271741\|ref\|XP_017576147.1\|	3.646e-89	66.82	PREDICTED: histone H3-like, partial [Pygocentrus n...	[more]
gi\|301090188\|ref\|XP_002895320.1\|	5.733e-89	97.04	histone H3.3 type 1 [Phytophthora infestans T30-4]...	[more]
gi\|224009486\|ref\|XP_002293701.1\|	6.982e-89	96.32	histone H3 [Thalassiosira pseudonana CCMP1335] >gi...	[more]
gi\|552812761\|ref\|XP_005843780.1\|	7.456e-89	96.32	hypothetical protein CHLNCDRAFT_59160 [Chlorella v...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5489	rna5489	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications