|
|
Properties
| Property Name | Value |
|---|
| Product | Trypsin Inhibitor-like, cysteine rich domain protein |
| Orig transcript id | gnl|cribi|Naga_100722g4.10568.mrna |
| Orig protein id | gnl|cribi|Naga_100722g4.10568 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:75569..77885 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5486 ID=rna5486|Name=rna5486|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGGGGCGTTCCTGGCCGAGCGTTGCCGAGAGGGAGGAAGCAAAAGAGGG
TGGAAGGACTAACGTCCCTGGAGGGGTATGGGTGTATGTATGTGGAAATG
TGTACGATTGTGGTGGGATGGTAGGTGCGGTTTTGTTGTATGTGGCGATG
AAGCGTAAGGAACAACGAGAAATCAGACAGCATGCAGAATCCCGAGAGGA
AGTATTGAGTCGATAA back to topprotein sequence of rna5486 >rna5486-protein ID=rna5486-protein|Name=rna5486|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDART
SSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEE
TLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCY
QRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKS
RGGREKHRSTSSRLPA back to topmRNA from alignment at CM002466.1:75569..77885+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5486 ID=rna5486|Name=rna5486|organism=Nannochloropsis gaditana|type=mRNA|length=2317bp|location=Sequence derived from alignment at CM002466.1:75569..77885+ (Nannochloropsis gaditana)
CAAGACTCTGCCACAGGAAAGACGACACTGATGCTTCGCTATGCTTCCAA
GGCGCggtcccttcccgcctccctgtTGCTTGTCTTTCTATTTGGTCTTC
TGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAACT
GGTAGGTTTTGAAAGGCAGATTTTCCCTCACTCCTACCCGCATtaatttt
tcttcttccaactCCCTTCTTGCGTGTTCATTGCCGCTAGCTTACACAGA
GGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAATCTTCGTCCACGTA
CAGATCATCCATTCGATAGACTTGCAGACTTGGAAGGGTAAGTGAGAAGG
ATTGACGTCGGAAATTGTCCTGAAGGAGGTTTTGAGTAGGAGACATACTG
TACACAGTCCGATGAGTTTCTCCATCATCTACTCGGTTTCTTTCTATTTA
AACAGTACCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGA
GCGTGAGATTTTTGTGCCGCCAgcagccgaggaggagactctcaaccctc
ttcctcgttgtCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCG
GTAATTCTATGAGATTTACCCAGTACCTTATAAGCAATCGAAATTTGTCG
ACTACTTCAGGCACAGATCATTCTGATCCCACTACATGTCAGCAAAACTT
TCTCTTCTTGAGAACTTGACTTGCTTTTTTCCATTCCATTTGCCTTCCCT
GCTCCTGATTTGAAAGCGTCAAATACTCTGTACCTGCTTTATTCTATATT
GTGTGTCCTTGCAGCTTTTCCACAGCATTTGGGCTACTGTATGTACGAAC
GTGATATATTTACATGCATTCTCACTTTCGTCCTTCGCAGAAATGCGCTG
CCACCTGCGCTGAACACAGAGACagccaggaaaaggaggcaacAGGAGTG
GTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTACCAGA
CTTTTATTTACTCGATGTAGGgacggcgggagaaagggggggagtggggg
ggggaggggggagggggcaagtGAAACTTTGGTTCGGAGGTACGATATGA
AGGAGTGATGTTCTTCTTTGATTTATAATATGTGCcatgtcttctccttt
ttctccactTCACATTGTATGCGCGGCTTTCTACCCTAATTATGCGCTGC
ATTATTCTTCCTCTCAAGACAATTTCTCAGACtgcgctttccccctccct
ctctcatgtGAAGgtccttcatttcccctccccttgtcgcTTACTTGTCG
TGTGTGTTTCCTCCGCCTATCTCTTGACTGCACTCTATTCCATGCCCGAT
GCGCCGCCGCTCCGCGcaaatccctccctcccctctctttccttccctcc
tcacttctctccccccttggTCCTGTCTATCAGGGCTTTTGCATATCGGA
GGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGAc
aggtcagggagggagggaagaaaaggggaaacgGAAGAAAatcacgagga
ggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGCTTGACTCTG
CCCTCAGAGAAGGCCCTCCCTGACACTAATTCATACCCTGCAAATCCTCA
AAAGCCCTTCATTGCTTGCCTAAACGCGGCGCTCGGCCGCCTtttgtcct
ccttcgtctcggTCTTGACCTGATCATTGGctgccttctcccctccctcc
cttccttatCTCATTTTTtaggccgtggaggaagccctgAAGGGTTTCGA
CCCAAAGATGGACCGAATTTTCCCCCGCGACGATTCCctcgaagaaagag
gagggagggagggaggggaggagggagggagggaggaagggggggctcCA
TTTCCCTTTGGGACGGGAAGCGAGGACGGTATTTTGGACGGCGTCAGCGA
TGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCCAGACGAAGGGCGGGTAC
GTAAGCGTGGatggaacgagggagggaaaaaagggaaaatgCGGGCACTC
ATGGTTTCATTTGCCCTTTGCGTGCATACTCAGGAGACAgcagggagaaa
agaggttGGGGTTTAGTGGAAAGGACCATACAAGGGTCCAAAGCGTCACG
GAAGCGTTGTTCCAGTCGTTAGGACGTAAATTTATTCgagttcctcctcc
tcctgatccGAAAGGACACATCTACGGTATCTGTTGCTCTTACTTACCCC
CCCTTTCAGAAGTTATTGAGACACTGCAACATCACTATTTGCCTTCGTGA
TTTTTTAAGGAAAAGCC back to topCoding sequence (CDS) from alignment at CM002466.1:75569..77885+ >rna5486 ID=rna5486|Name=rna5486|organism=Nannochloropsis gaditana|type=CDS|length=3255bp|location=Sequence derived from alignment at CM002466.1:75569..77885+ (Nannochloropsis gaditana)
ATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTGCT
TGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCACAG
CCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCACT
TCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGATAG
ACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACGCC
CAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggaggag
actctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTCTG
CGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACagcc
aggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCTAC
CAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGCAT
ATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAA
AGAGAcaggtcagggagggagggaagaaaaggggaaacgGAAGAAAatca
cgaggaggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGCTTG
AATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTGC
TTGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCACA
GCCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCAC
TTCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGATA
GACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACGC
CCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggagga
gactctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTCT
GCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACagc
caggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCTA
CCAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGCA
TATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAA
AAGAGAcaggtcagggagggagggaagaaaaggggaaacgGAAGAAAatc
acgaggaggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGCTT
GAATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTG
CTTGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCAC
AGCCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCA
CTTCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGAT
AGACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACG
CCCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggagg
agactctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTC
TGCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACag
ccaggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCT
ACCAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGC
ATATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAA
AAAGAGAcaggtcagggagggagggaagaaaaggggaaacgGAAGAAAat
cacgaggaggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGCT
TGAATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtT
GCTTGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCA
CAGCCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGC
ACTTCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGA
TAGACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATAC
GCCCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggag
gagactctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTT
CTGCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACa
gccaggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGC
TACCAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTG
CATATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCA
AAAAGAGAcaggtcagggagggagggaagaaaaggggaaacgGAAGAAAa
tcacgaggaggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGC
TTGAATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgt
TGCTTGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCC
ACAGCCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCG
CACTTCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCG
ATAGACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATA
CGCCCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgagga
ggagactctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTT
TCTGCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGAC
agccaggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTG
CTACCAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTT
GCATATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGC
AAAAAGAGAcaggtcagggagggagggaagaaaaggggaaacgGAAGAAA
atcacgaggaggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTG
CTTGA back to top
|