EWM25202.1, cds5472 (CDS) Nannochloropsis gaditana

Overview
NameEWM25202.1
Unique Namecds5472
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:75599..75719 +
Alignment locationCM002466.1:75809..75905 +
Alignment locationCM002466.1:76024..76168 +
Alignment locationCM002466.1:76459..76584 +
Alignment locationCM002466.1:77002..77163 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25202.1
ProductTrypsin Inhibitor-like, cysteine rich domain protein
Orig transcript idgnl|cribi|Naga_100722g4.10568.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:75599..75719 +
CM002466.1supercontigCM002466.1:75809..75905 +
CM002466.1supercontigCM002466.1:76024..76168 +
CM002466.1supercontigCM002466.1:76459..76584 +
CM002466.1supercontigCM002466.1:77002..77163 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002919TIL_dom
Homology
[Close]
BLAST of EWM25202.1 vs. NCBI_GenBank
Match: gi|585106875|gb|EWM25202.1| (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 1.683e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 
Query:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHRSTSSRLPA 216
            MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHRSTSSRLPA
Sbjct:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHRSTSSRLPA 216
[Close]
BLAST of EWM25202.1 vs. NCBI_GenBank
Match: gi|553192200|ref|XP_005855530.1| (hypothetical protein NGA_0618700 [Nannochloropsis gaditana CCMP526] >gi|422293524|gb|EKU20824.1| hypothetical protein NGA_0618700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 424.091 bits (1089), Expect = 5.337e-150
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0 
Query:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHR 208
            MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDH FDRLADLEGTKGSLNGKIRPKSSER+IFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHR
Sbjct:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHTFDRLADLEGTKGSLNGKIRPKSSERDIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVREGGKKRGNGRKSRGGREKHR 208
[Close]
BLAST of EWM25202.1 vs. NCBI_GenBank
Match: gi|585106874|gb|EWM25201.1| (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 360.533 bits (924), Expect = 7.231e-124
Identity = 187/189 (98.94%), Postives = 187/189 (98.94%), Query Frame = 0 
Query:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVRE 189
            MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQ  E
Sbjct:    1 MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDARTSSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEETLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQAVE 189
The following BLAST results are available for this feature:
BLAST of EWM25202.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106875|gb|EWM25202.1|1.683e-157100.00Trypsin Inhibitor-like, cysteine rich domain prote... [more]
gi|553192200|ref|XP_005855530.1|5.337e-15099.04hypothetical protein NGA_0618700 [Nannochloropsis ... [more]
gi|585106874|gb|EWM25201.1|7.231e-12498.94Trypsin Inhibitor-like, cysteine rich domain prote... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5486rna5486Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications