rna5485, rna5485 (mRNA) Nannochloropsis gaditana

Overview
Namerna5485
Unique Namerna5485
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length544
Alignment locationCM002466.1:74857..75163 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100722g5.10564.mrna
Orig protein idgnl|cribi|Naga_100722g5.10564
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:74857..75163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100722g5gene5298Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5485rna5485-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25198.1cds5471Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5485 ID=rna5485|Name=rna5485|organism=Nannochloropsis gaditana|type=mRNA|length=544bp
TCCCTCCCTCCCTCCCTCCACGTCCTTCAGGATGTGCTGCCCAAGCTGAA
TAGACTTATGCAGTCCGAGTCCCTGCCTGGGGAGGGTGAGCTTCAAGCCC
CCCCGCCTCCTCCCCCCCTTCCTCCGTCCGCGGAGCTGTACAAATTCCCC
GCCCTCCCTCCTCCTCCACCTCCCTCGCTCCCGCCCTCCCTCCCTTCCAT
GACCTCCCTCTCCCATGCCCTGACCCCGAGGCCCCGGAAGAAAGGAAGGG
GAGGGGCAGGGCGGGAGGGAGGGCGAGAGGGAGGACGCGGTGGTGGGGAG
AAGGTCAATCGGGCAATCTCAGAGGAGGGACAGGGTAAAGAGGAGGTTGG
AGGCCTAAAGGAGGAGAAGAAAGGCGGGAAGAAGGGGCGGAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGCGGTGGCGAGGTGGCCCTGCGTCCTTTG
CTTCCAATAGGAGTACAGGAAGAAGAAGCCGATGACAGAAAGGGAGGAGG
GGATTGAAAGTGAAGAAAATAAAAATAAGAAAAGACTTGTGTTT
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protein sequence of rna5485

>rna5485-protein ID=rna5485-protein|Name=rna5485|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MGRSWPSVAEREEAKEGGRTNVPGGVWVYVCGNVYDCGGMVGAVLLYVAM
KRKEQREIRQHAESREEVLSR
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mRNA from alignment at CM002466.1:74857..75163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5485 ID=rna5485|Name=rna5485|organism=Nannochloropsis gaditana|type=mRNA|length=307bp|location=Sequence derived from alignment at CM002466.1:74857..75163+ (Nannochloropsis gaditana)
ATGGGGCGTTCCTGGCCGAGCGTtgccgagagggaggaagcaaaagaggg
tggaaggaCTAACGTCCCGTGCCTAGGAGGTGTGGTGGGCGAATGTAATG
GTGCCCAGGAGATTTAAAACATCACAAAGGAGGTTTGTCTTGGATTGTTT
GGTTTGAAGTGGAGGGGTATGGGTGTATGTATGTGGAAATGTGTACGATT
GTGGTGGGATGGTAGGTGCGGTTTTGTTGTATGTGGCGATGAAGCGTAAG
GAACAACGAGAAATCAGACAGCATGCAGAATCCCGAGAGGAAGTATTGAG
TCGATAA
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Coding sequence (CDS) from alignment at CM002466.1:74857..75163+

>rna5485 ID=rna5485|Name=rna5485|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002466.1:74857..75163+ (Nannochloropsis gaditana)
ATGGGGCGTTCCTGGCCGAGCGTtgccgagagggaggaagcaaaagaggg
tggaaggaCTAACGTCCCTGGAGGGGTATGGGTGTATGTATGTGGAAATG
TGTACGATTGTGGTGGGATGGTAGGTGCGGTTTTGTTGTATGTGGCGATG
AAGCGTAAGGAACAACGAGAAATCAGACAGCATGCAGAATCCCGAGAGGA
AGTATTGAGTCGATAAATGGGGCGTTCCTGGCCGAGCGTtgccgagaggg
aggaagcaaaagagggtggaaggaCTAACGTCCCTGGAGGGGTATGGGTG
TATGTATGTGGAAATGTGTACGATTGTGGTGGGATGGTAGGTGCGGTTTT
GTTGTATGTGGCGATGAAGCGTAAGGAACAACGAGAAATCAGACAGCATG
CAGAATCCCGAGAGGAAGTATTGAGTCGATAA
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Synonyms
Publications