rna5484, rna5484 (mRNA) Nannochloropsis gaditana

Overview
Namerna5484
Unique Namerna5484
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1455
Alignment locationCM002466.1:73017..73560 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100693g1.3146.mrna
Orig protein idgnl|cribi|Naga_100693g1.3146
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:73017..73560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100693g1gene5297Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25203.1cds5470Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5484rna5484-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5484 ID=rna5484|Name=rna5484|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
ATGATGAATTTGGTGAGGTCGATAGGTGCAAACTGTTGCAAACTTGATCT
ACATGACCTAAGGTATGTGATACGCCTCCGATTTATAATAAGCAATAGCA
TTTTATCATACGCCACGAAAGGGTTAAATGACGTATCTGGCTGCGAAAGA
GGATTCGCTTCGACCTACTACCCTTCCTTCGCCCAACACCGTCGTCTGTG
CCTCTCTCGCCATCAACCTGCCCCCAACACACCGTTGCGATATAAAAATA
AAATTCAGGTCGTAACACCAACAGGTGGCATCATCGCTGCGCCCTTTCGA
TCGATCTCTGCTGTGCACTTTTCCCCCTCGTCTTGTCCTATCCCCGCCGC
GTCCCTCGGCGCCGTGTCCATGGCACCCAAACGCAAATTGGCCTCAACAC
GATTGAACTTGGAAGAAAGAGAATACAGCGCAAAGGGATGGATGGACCTG
GACGTCCCTCCGCACGAGCTGCGCCCAGAATTCTCCCTGACGATGGGTCA
GTGTTTCAATTGGCGCCGTCAAGACCCGGTCGAATGCCTTTTCTCCTTCA
TCTGCTCCTCCAACAACAACATACCTCGCATCGCCCTGATGCTGGATCGG
CTCAGGAAAACATACGGAGAACCTCTGGGGAAAGGATATCATGCCTTCCC
TCCCCTCTCCTCCCTCGCCTCCGCCTCTGAGGAGGAGCTTCGTGGCCTCG
GTCTTGGCTACCGGGCTCGCTTTATCAAGTTAACGGCATCTCAACTTTTG
GACCTTGGTGGAAGGGAGTGGCTGATGTCCCTCCGGGAGAAATCTCGCGA
GGAAGCACAGCAAGCACTCTGCGCCTTCCCAGGCGTAGGGAGGAAAGTTG
CCGACTGTGTGGCTCTTTTTTCCTTGGACCAACACGGTGCCATACCGGTG
GATGTGCACGTGTGGCGTATCGCCTGTCGAGACTACTCTCCCGTCCTCAA
AGAACACAAAAGCTTGACGCCCGCTGTCTACGAAGCCGTCGGGGACATTT
TTCGGAACAAATTCGGGTCGCATGCGGGCTGGGCACATTCCCTTCTATTT
GCAGCCGAATTGCCCGATTACAGAGCACGTCTTCCCCTCTTTCTTCAAAA
CGAAATGCTTGCATTTAAAAAAGAAGAAGGGATTGAGAAAGCCTTGAAAA
GGGAAGCGCAAAAGGCGAAGAGGAAAGAAAAAGCGGAAAAAGGAGAGGAA
GAACGGGCCACAGTAATTATTGAGAAGACGACGGAGGAAACCATCAAGGA
TGAAATCTTGCGAACAGAGGAAAGAATAGTTGAATTGGAAGAAGAAGAAG
GCAAAGTATTACGGGACGTAAAAACAAAGGCTATGAGCAAGCGTACGAAA
AGACAGAAAGTAAGTATTAGCGAGGAGAAGAACAGCTGTGCTAGAACAAG
TATGGAAGCACAAGGAGGTGGTAAGCATGTCAAAAAAGAGGAAAAGGATT
CATGA
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protein sequence of rna5484

>rna5484-protein ID=rna5484-protein|Name=rna5484|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
SLPPSLHVLQDVLPKLNRLMQSESLPGEGELQAPPPPPPLPPSAELYKFP
ALPPPPPPSLPPSLPSMTSLSHALTPRPRKKGRGGAGREGGREGGRGGGE
KVNRAISEEGQGKEEVGGLKEEKKGGKKGRKEGGREGGREGGGEVALRPL
LPIGVQEEEADDRKGGGD
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mRNA from alignment at CM002466.1:73017..73560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5484 ID=rna5484|Name=rna5484|organism=Nannochloropsis gaditana|type=mRNA|length=544bp|location=Sequence derived from alignment at CM002466.1:73017..73560- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTCCACGTCCTTCAGGATGTGCTGCCCAAGCTGAA TAGACTTATGCAGTCCGAGTCCCTGCCTGGGGAGGGTGAGCTTCAAGCCC CCCCGCCTCCTCCCCCCCTTCCTCCGTCCGCGGAGCTGTACAAATTCCCC GCCCTCCCTCCTCCTCCACCTCCCTCGCTCCCGCCCTCCCTCCCTTCCAT GACCTCCCTCTCCCATGCCCTGACCCCGAGGCCCCGGAAGAAAGGAAGGG GAGGGGCAGGGCGGGAGGGAGGGCGAGAGGGAGGACGCGGTGGTGGGGAG AAGGTCAATCGGGCAATCTCAGAGGAGGGACAGGGTAAAGAGGAGGTTGG AGGCCTAAAGGAGGAGAAGAAAGGCGGGAAGAAGGGGCGGAAGGAGGGAG GGAGGGAGGGAGGGAGGGAGGGCGGTGGCGAGGTGGCCCTGCGTCCTTTG CTTCCAATAGGAGTACAGGAAGAAGAAGCCGATGACAGAAAGGGAGGAGG GGATTGAAAGTGAAGAAAATAAAAATAAGAAAAGACTTGTGTTT
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Coding sequence (CDS) from alignment at CM002466.1:73017..73560-

>rna5484 ID=rna5484|Name=rna5484|organism=Nannochloropsis gaditana|type=CDS|length=507bp|location=Sequence derived from alignment at CM002466.1:73017..73560- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTCCACGTCCTTCAGGATGTGCTGCCCAAGCTGAA
TAGACTTATGCAGTCCGAGTCCCTGCCTGGGGAGGGTGAGCTTCAAGCCC
CCCCGCCTCCTCCCCCCCTTCCTCCGTCCGCGGAGCTGTACAAATTCCCC
GCCCTCCCTCCTCCTCCACCTCCCTCGCTCCCGCCCTCCCTCCCTTCCAT
GACCTCCCTCTCCCATGCCCTGACCCCGAGGCCCCGGAAGAAAGGAAGGG
GAGGGGCAGGGCGGGAGGGAGGGCGAGAGGGAGGACGCGGTGGTGGGGAG
AAGGTCAATCGGGCAATCTCAGAGGAGGGACAGGGTAAAGAGGAGGTTGG
AGGCCTAAAGGAGGAGAAGAAAGGCGGGAAGAAGGGGCGGAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGCGGTGGCGAGGTGGCCCTGCGTCCTTTG
CTTCCAATAGGAGTACAGGAAGAAGAAGCCGATGACAGAAAGGGAGGAGG
GGATTGA
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Synonyms
Publications