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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna methyltransferase |
| Orig transcript id | gnl|cribi|Naga_100311g3.1357.mrna |
| Orig protein id | gnl|cribi|Naga_100311g3.1357 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:53183..56236 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5481 ID=rna5481|Name=rna5481|organism=Nannochloropsis gaditana|type=mRNA|length=1949bp
GTATTTTCTGCCCACATGCCCGAGAAAGCAGCCACTATCAGTCTGATACT
AACGCGTACTTTTAGGGACTTATATTCTTTCCACGTCTGACTCGTTGAGG
GTGCGATCACCAGACACAGGCATTTTGGTCTAGCCCGAGATGACCCTCCT
CTTACCACCCAACGCCACACTCCACCGGAAGCTTCAACATGTTAAGCCGG
ACAATGGGCACCCTGAGCACCAACAGAGCACACCATACGGCCATTTTGGC
ATAAGAATCACAAAGGCCGACAGTGCAGCGATAAATAGCACCCAGCCCAT
TGTGCTGACTCCACTATTCCCCTTTGTGTGGGCATGCGAGGTCGGACAGT
CCCAGGTGCATCGTCTCCTGTCTTACTTGCCTACAGCATCCTTTCCCTCT
ACTATCAACGACGCAAGGATAAATGTACTTACGCATGATAATCCTACTTC
CTCGCCTGGCTTTCTGGCTCCTTCTTGCAGTTTTGGGGCCGTGCCCGCGT
CAAATGCAGGCTCCATGCCTTCCTCCCCTCCCGACCTCGCCCCTATCCCC
CGAACCAACCTCAGAAAGAGCAATAGAATAGAGCAATCTACCCCCCCCCT
GGCTGGATGCATCGCGGATCGGTCACACCGACATGCCAGCTGCCTGTTGG
GCGCCAATTATAGACTCGACGACCCAGCCCTCATTCCCCTTGTGCACCGT
CGATACATTACTCGATTCTTCTACGTACCTTATGCCTGTCGGGACATGGG
GTGGGTGGCTTTCAGTCCAGAGTTGCGTCAGGCGTTGAAGACGGCCAGGT
CCAGCCTTTCTCGATCGTTTTGCCTGAAGATCTCCGCGTTCCCCAAGAAC
ATGGAGGTAGCCATCGGAGAAATCCTCTTGACAGCTCCAGTCGCCCAAGG
CTGTCGGTTGGAGGAAAAAGAGCTTTCTCCCTCCGCCTCTCAGGCGTCGC
ATGTGTTGCACGTGGTTCATTCCCCTGAATGGAGCCCCCTCTTCTACTAC
GGCCTCACACAGAGCCATTCCCTCACCGGCCCTACTTCCGCCCCTCCTCC
ATCCTTCCTTTCCTTCCTCCCTCCTTCCTTCGAAAAACCACCCTCCTCCT
CCTCCTTGCCCCCCGTCTCCCGGGCATATTTTAAAATGCGGGAAATATGG
GAGGAGCGGTTGGAGGAAGGGATGGAGGGCGGGATGGAGGAAGAAATGTG
GAAGAAGGACAGGAAAGCCTTGGACGTCGGGGCTTCGCCGGGGGGGTGGA
CGCAATACCTCAGTGATAAACTGTCTCAGGTCGTCGCTGTGGACGGGGCG
AGCCTTCATCCTTCCCTCCTCCCCTCCCTCTCCAATGTCCGCCACGTCCC
GTACCGGATCCAAGCGGAGGAAGCGACGGAGGTCTTGAAGGAGGAAGGGC
CCTTCCATTTGGTCTGTGTGGACATCAACCTCTTCCCGCAGGGGGCGGCG
GATCTCATCCTTCAACATGTCTTCCCGCACGTGGCCCACCACGCCCTCGT
AATTCTCACTCTGAAGTTTCCACGGAAGCCCACTGGTGCACGTCTCCAGA
AAGCGCTGCGCGACCTAGAACGCATATGGGCCGAGGACCCTGAAATTTAC
TGCCGTTCGAGTAGAAAGAGAGAAGAAGGGCACCGGGACGACGAAGATAA
ATCAGAAGTACTTCGGTTACTGTGGCTTCATGCAAATTCGTCGCATGAAC
GGACGGTTATCACCTGGGTGCATCGCCGAAAATCGAGGCCTCCTGTATGA
GCACTCATAGGATTTTCAGAAATGTGTAAAGGCAATTTTGATGAGACGCG
AAATTGTAACACTCCCTCCAGGATGATATTCAAATAAGCGAAAATTCTTT
CATTAAATGTTGGATCCTATATGAAGGCTTCGTGATTTTATTTCCGCGTG
TTGTTTTTGGTAAGCAACGTAATGCAAAATTCACACGGGGGGCAGCATT back to topprotein sequence of rna5481 >rna5481-protein ID=rna5481-protein|Name=rna5481|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINS
TQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHD
NPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQS
TPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYAC
RDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAP
VAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTS
APPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGME
EEMWKKDRKALDVGASPGGWTQYLRYNSRGRGGREKLRRNRGL back to topmRNA from alignment at CM002466.1:53183..56236- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5481 ID=rna5481|Name=rna5481|organism=Nannochloropsis gaditana|type=mRNA|length=3054bp|location=Sequence derived from alignment at CM002466.1:53183..56236- (Nannochloropsis gaditana)
GTATTTTCTGCCCACATGCCCGAGAAAGCAGCCACTATCAGTCTGATACT
AACGCGTACTTTTAGGGACTTATATTCTTTCCACGTCTGACTCGTTGAGG
GTGCGATCACCAGACACAGGCATTTTGGTCTAGCCCGAGATGACCCTCCT
CTTACCACCCAACGCCACACTCCACCGGAAGCTTCAACATGTTAAGCCGG
ACAATGGGCACCCTGAGCACCAACAGAGCACACCATACGGCCATTTTGGC
ATAAGAATCACAAAGGCCGACAGTGCAGCGATAAATAGCACCCAGCCCAT
TGTGCTGACTCCACTATTCCCCTTTGTGTGGGCATGCGAGGTCGGACAGT
CCCAGGTGCATCGTCTCCTGTCTTACTTGCCTACAGCATCCTTTCCCTCT
ACTATCAACGACGCAAGGATAAATGTACTTACGCATGATAATCCTACTTC
CTCGCCTGGCTTTCTGGCTCCTTCTTGCAGTTTTGGGGCCGTGCCCGCGT
CAAATGCAGGCTCCATGCCTTCCTCCCCTCCCGACCTCGCCCCTATCCCC
CGAACCAACCTCAGAAAGAGCAATAGAATAGAGCAATCTACCCCCCCCCT
GGCTGGATGCATCGCGGATCGGTCACACCGACATGCCAGCTGCCTGTTGG
GCGCCAATTATAGACTCGACGACCCAGCCCTCATTCCCCTTGTGCACCGT
CGATACATTACTCGATTCTTCTACGTACCTTATGCCTGTCGGGACATGGG
GTGGGTGGCTTTCAGTCCAGAGTTGCGTCAGGCGTTGAAGACGGCCAGGT
CCAGGTACGCGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGCGTGCGGGGA
GGAAGCGAAGGAGAAGGGCGCCGGACAACTTCCCCCCCCCCCCGCTGCCG
CCACTGTGCTTTCAATGGGCCGGATCGTCAACACTTTGCGACTGCTTCTT
CACATCTTTTGCTTGCTCCTATTAGTATCCCTTCCCATCTTACCGCTCAA
ATCGCGGCTGCTCATCCTCCTCCCTCTCTCTCTTTCCTCCCTTCCCTCCC
CCAAAGCCTTTCTCGATCGTTTTGCCTGAAGATCTCCGCGTTCCCCAAGA
ACATGGAGGTAGCCATCGGAGAAATCCTCTTGACAGCTCCAGTCGCCCAA
GGCTGTCGGTTGGAGGAAAAAGAGCTTTCTCCCTCCGCCTCTCAGGCGTC
GCATGTGTTGCACGTGGTTCATTCCCCTGGTAAGGAGGGAAGGAGGGAGG
GAGGGAAGGAGGGAGAAGCGTAGGGGGGGAAGGTGTGTCTAACTTTAGCG
CTGGAGTTAAGGTCTTGTTCTTCTCCGGATCCTCTCTTCTGTTTGCTTTC
TTTTTGCGATGCGCATCCTCAACTATCGTCAATCCAGTGCACAACTTTGC
GAGACTTCTTGCATTTACATTAACCGGGCCAGACCAGAACCTTTCTTCGC
CAATGCACCCACCTTGAATATTTTCTCTTCATTCGGGGTCCGGAGATTGG
TTTTTCCCGGCTCACTTACCCTTACCCACACCTATCCAGAATGGAGCCCC
CTCTTCTACTACGGCCTCACACAGAGCCATTCCCTCACCGGCCCTACTTC
CGCCCCTCCTCCATCCTTCCTTTCCTTCCTCCCTCCTTCCTTCGAAAAAC
CACCCTCCTCCTCCTCCTTGCCCCCCGTCTCCCGGGCATATTTTAAAATG
CGGGAAATATGGGAGGAGCGGTTGGAGGAAGGGATGGAGGGCGGGATGGA
GGAAGAAATGTGGAAGAAGGACAGGAAAGCCTTGGACGTCGGGGCTTCGC
CGGGGGGGTGGACGCAATACCTCAGGTACAATTCAAGAGGGAGGGGAGGG
AGAGAGAAGTTAAGGAGGAACAGAGGATTGTAGTGGATACAGAGCCATGG
TCCTCTAGGACGAAGTGTCTCGTCGTCCTTCCTTCTTCCTAATCCTCCCC
TTCCTCCCTCCTGGCCTCCCAAATTCCCACTTCCCTGCCCAGTGATAAAC
TGTCTCAGGTCGTCGCTGTGGACGGGGCGAGCCTTCATCCTTCCCTCCTC
CCCTCCCTCTCCAATGTCCGCCACGTCCCGTACCGGATCCAAGCGGAGGA
AGCGACGGAGGTCTTGAAGGAGGAAGGGCCCTTCCATTTGGTCTGTGTGG
ACATCAACCTCTTCCCGCAGGTGAGGGTCCATGGTATGAATCGGAAAAGA
TGTCTCACCGGTTTTTCAAAGACTTGGCAATGAATTTTTTATCCATAGAC
TTTTACCCTTACCCTGTATTTTCACTTCCCATATCTCTTCTTTCTCTCCC
CAGGGGGCGGCGGATCTCATCCTTCAACATGTCTTCCCGCACGTGGCCCA
CCACGCCCTCGTAATTCTCACTCTGAAGTTTCCACGGAAGCCCACTGGTG
CACGGTAGGCCTCTGCGTCCTCCTTCTTCCCTTCCCCCCTCCCTCCTCCC
CTTTCACTTTCCTCCCTCCTTCCCTCTTTTCTCCCTTTTGCTTTTTCAGC
CCTCCCCATTTCTTTTCTCCGAGCTTCGCTACGATTTTTCCTTTCCTCCG
AGCTTCGCTACGATTTTTTCACACTCTATGGGATACTATTTCCTTTCTTA
TTTGTTTTCTTTGTGCCTACGTGGGTGTTGGAATGTCTTCCATACAGTCT
CCAGAAAGCGCTGCGCGACCTAGAACGCATATGGGCCGAGGACCCTGAAA
TTTACTGCCGTTCGAGTAGAAAGAGAGAAGAAGGGCACCGGGACGACGAA
GATAAATCAGAAGTACTTCGGTTACTGTGGCTTCATGCAAATTCGTCGCA
TGAACGGACGGTTATCACCTGGGTGCATCGCCGAAAATCGAGGCCTCCTG
TATGAGCACTCATAGGATTTTCAGAAATGTGTAAAGGCAATTTTGATGAG
ACGCGAAATTGTAACACTCCCTCCAGGATGATATTCAAATAAGCGAAAAT
TCTTTCATTAAATGTTGGATCCTATATGAAGGCTTCGTGATTTTATTTCC
GCGTGTTGTTTTTGGTAAGCAACGTAATGCAAAATTCACACGGGGGGCAG
CATT back to topCoding sequence (CDS) from alignment at CM002466.1:53183..56236- >rna5481 ID=rna5481|Name=rna5481|organism=Nannochloropsis gaditana|type=CDS|length=3546bp|location=Sequence derived from alignment at CM002466.1:53183..56236- (Nannochloropsis gaditana)
AATGGAGCCCCCTCTTCTACTACGGCCTCACACAGAGCCATTCCCTCACC
GGCCCTACTTCCGCCCCTCCTCCATCCTTCCTTTCCTTCCTCCCTCCTTC
CTTCGAAAAACCACCCTCCTCCTCCTCCTTGCCCCCCGTCTCCCGGGCAT
ATTTTAAAATGCGGGAAATATGGGAGGAGCGGTTGGAGGAAGGGATGGAG
GGCGGGATGGAGGAAGAAATGTGGAAGAAGGACAGGAAAGCCTTGGACGT
CGGGGCTTCGCCGGGGGGGTGGACGCAATACCTCAGGTACAATTCAAGAG
GGAGGGGAGGGAGAGAGAAGTTAAGGAGGAACAGAGGATTGTAGCCTTTC
TCGATCGTTTTGCCTGAAGATCTCCGCGTTCCCCAAGAACATGGAGGTAG
CCATCGGAGAAATCCTCTTGACAGCTCCAGTCGCCCAAGGCTGTCGGTTG
GAGGAAAAAGAGCTTTCTCCCTCCGCCTCTCAGGCGTCGCATGTGTTGCA
CGTGGTTCATTCCCCTGATGACCCTCCTCTTACCACCCAACGCCACACTC
CACCGGAAGCTTCAACATGTTAAGCCGGACAATGGGCACCCTGAGCACCA
ACAGAGCACACCATACGGCCATTTTGGCATAAGAATCACAAAGGCCGACA
GTGCAGCGATAAATAGCACCCAGCCCATTGTGCTGACTCCACTATTCCCC
TTTGTGTGGGCATGCGAGGTCGGACAGTCCCAGGTGCATCGTCTCCTGTC
TTACTTGCCTACAGCATCCTTTCCCTCTACTATCAACGACGCAAGGATAA
ATGTACTTACGCATGATAATCCTACTTCCTCGCCTGGCTTTCTGGCTCCT
TCTTGCAGTTTTGGGGCCGTGCCCGCGTCAAATGCAGGCTCCATGCCTTC
CTCCCCTCCCGACCTCGCCCCTATCCCCCGAACCAACCTCAGAAAGAGCA
ATAGAATAGAGCAATCTACCCCCCCCCTGGCTGGATGCATCGCGGATCGG
TCACACCGACATGCCAGCTGCCTGTTGGGCGCCAATTATAGACTCGACGA
CCCAGCCCTCATTCCCCTTGTGCACCGTCGATACATTACTCGATTCTTCT
ACGTACCTTATGCCTGTCGGGACATGGGGTGGGTGGCTTTCAGTCCAGAG
TTGCGTCAGGCGTTGAAGACGGCCAGGTCCAGAATGGAGCCCCCTCTTCT
ACTACGGCCTCACACAGAGCCATTCCCTCACCGGCCCTACTTCCGCCCCT
CCTCCATCCTTCCTTTCCTTCCTCCCTCCTTCCTTCGAAAAACCACCCTC
CTCCTCCTCCTTGCCCCCCGTCTCCCGGGCATATTTTAAAATGCGGGAAA
TATGGGAGGAGCGGTTGGAGGAAGGGATGGAGGGCGGGATGGAGGAAGAA
ATGTGGAAGAAGGACAGGAAAGCCTTGGACGTCGGGGCTTCGCCGGGGGG
GTGGACGCAATACCTCAGGTACAATTCAAGAGGGAGGGGAGGGAGAGAGA
AGTTAAGGAGGAACAGAGGATTGTAGCCTTTCTCGATCGTTTTGCCTGAA
GATCTCCGCGTTCCCCAAGAACATGGAGGTAGCCATCGGAGAAATCCTCT
TGACAGCTCCAGTCGCCCAAGGCTGTCGGTTGGAGGAAAAAGAGCTTTCT
CCCTCCGCCTCTCAGGCGTCGCATGTGTTGCACGTGGTTCATTCCCCTGA
TGACCCTCCTCTTACCACCCAACGCCACACTCCACCGGAAGCTTCAACAT
GTTAAGCCGGACAATGGGCACCCTGAGCACCAACAGAGCACACCATACGG
CCATTTTGGCATAAGAATCACAAAGGCCGACAGTGCAGCGATAAATAGCA
CCCAGCCCATTGTGCTGACTCCACTATTCCCCTTTGTGTGGGCATGCGAG
GTCGGACAGTCCCAGGTGCATCGTCTCCTGTCTTACTTGCCTACAGCATC
CTTTCCCTCTACTATCAACGACGCAAGGATAAATGTACTTACGCATGATA
ATCCTACTTCCTCGCCTGGCTTTCTGGCTCCTTCTTGCAGTTTTGGGGCC
GTGCCCGCGTCAAATGCAGGCTCCATGCCTTCCTCCCCTCCCGACCTCGC
CCCTATCCCCCGAACCAACCTCAGAAAGAGCAATAGAATAGAGCAATCTA
CCCCCCCCCTGGCTGGATGCATCGCGGATCGGTCACACCGACATGCCAGC
TGCCTGTTGGGCGCCAATTATAGACTCGACGACCCAGCCCTCATTCCCCT
TGTGCACCGTCGATACATTACTCGATTCTTCTACGTACCTTATGCCTGTC
GGGACATGGGGTGGGTGGCTTTCAGTCCAGAGTTGCGTCAGGCGTTGAAG
ACGGCCAGGTCCAGAATGGAGCCCCCTCTTCTACTACGGCCTCACACAGA
GCCATTCCCTCACCGGCCCTACTTCCGCCCCTCCTCCATCCTTCCTTTCC
TTCCTCCCTCCTTCCTTCGAAAAACCACCCTCCTCCTCCTCCTTGCCCCC
CGTCTCCCGGGCATATTTTAAAATGCGGGAAATATGGGAGGAGCGGTTGG
AGGAAGGGATGGAGGGCGGGATGGAGGAAGAAATGTGGAAGAAGGACAGG
AAAGCCTTGGACGTCGGGGCTTCGCCGGGGGGGTGGACGCAATACCTCAG
GTACAATTCAAGAGGGAGGGGAGGGAGAGAGAAGTTAAGGAGGAACAGAG
GATTGTAGCCTTTCTCGATCGTTTTGCCTGAAGATCTCCGCGTTCCCCAA
GAACATGGAGGTAGCCATCGGAGAAATCCTCTTGACAGCTCCAGTCGCCC
AAGGCTGTCGGTTGGAGGAAAAAGAGCTTTCTCCCTCCGCCTCTCAGGCG
TCGCATGTGTTGCACGTGGTTCATTCCCCTGATGACCCTCCTCTTACCAC
CCAACGCCACACTCCACCGGAAGCTTCAACATGTTAAGCCGGACAATGGG
CACCCTGAGCACCAACAGAGCACACCATACGGCCATTTTGGCATAAGAAT
CACAAAGGCCGACAGTGCAGCGATAAATAGCACCCAGCCCATTGTGCTGA
CTCCACTATTCCCCTTTGTGTGGGCATGCGAGGTCGGACAGTCCCAGGTG
CATCGTCTCCTGTCTTACTTGCCTACAGCATCCTTTCCCTCTACTATCAA
CGACGCAAGGATAAATGTACTTACGCATGATAATCCTACTTCCTCGCCTG
GCTTTCTGGCTCCTTCTTGCAGTTTTGGGGCCGTGCCCGCGTCAAATGCA
GGCTCCATGCCTTCCTCCCCTCCCGACCTCGCCCCTATCCCCCGAACCAA
CCTCAGAAAGAGCAATAGAATAGAGCAATCTACCCCCCCCCTGGCTGGAT
GCATCGCGGATCGGTCACACCGACATGCCAGCTGCCTGTTGGGCGCCAAT
TATAGACTCGACGACCCAGCCCTCATTCCCCTTGTGCACCGTCGATACAT
TACTCGATTCTTCTACGTACCTTATGCCTGTCGGGACATGGGGTGGGTGG
CTTTCAGTCCAGAGTTGCGTCAGGCGTTGAAGACGGCCAGGTCCAG back to top
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