EWM25207.1, cds5467 (CDS) Nannochloropsis gaditana

Overview
NameEWM25207.1
Unique Namecds5467
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:55433..56097 -
Alignment locationCM002466.1:55008..55180 -
Alignment locationCM002466.1:54354..54697 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25207.1
Productribosomal rna methyltransferase
Orig transcript idgnl|cribi|Naga_100311g3.1357.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:55433..56097 -
CM002466.1supercontigCM002466.1:55008..55180 -
CM002466.1supercontigCM002466.1:54354..54697 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0032259methylation
Vocabulary: INTERPRO
TermDefinition
IPR002877rRNA_MeTrfase_FtsJ_dom
IPR029063SAM-dependent_MTases
Homology
[Close]
BLAST of EWM25207.1 vs. NCBI_GenBank
Match: gi|585106884|gb|EWM25207.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0 
Query:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLRYNSRGRGGREKLRRNRGL 393
            MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLRYNSRGRGGREKLRRNRGL
Sbjct:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLRYNSRGRGGREKLRRNRGL 393
[Close]
BLAST of EWM25207.1 vs. NCBI_GenBank
Match: gi|585106883|gb|EWM25206.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 
Query:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL 374
            MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL
Sbjct:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL 374
[Close]
BLAST of EWM25207.1 vs. NCBI_GenBank
Match: gi|553192214|ref|XP_005855534.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293528|gb|EKU20828.1| ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.8626 bits (172), Expect = 2.423e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 
Query:  345 MEGGMEEEMWKKDRKALDVGASPGGWTQYL 374
            MEGGMEEEMWKKDRKALDVGASPGGWTQYL
Sbjct:    1 MEGGMEEEMWKKDRKALDVGASPGGWTQYL 30
The following BLAST results are available for this feature:
BLAST of EWM25207.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106884|gb|EWM25207.1|0.000e+0100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
gi|585106883|gb|EWM25206.1|0.000e+0100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
gi|553192214|ref|XP_005855534.1|2.423e-11100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5481rna5481Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications