rna5473, rna5473 (mRNA) Nannochloropsis gaditana

Overview
Namerna5473
Unique Namerna5473
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length369
Alignment locationCM002466.1:43875..45582 -

Link to JBrowse

Properties
Property NameValue
Productatp-dependent bile acid permease
Orig transcript idgnl|cribi|Naga_101631g1.4297.mrna
Orig protein idgnl|cribi|Naga_101631g1.4297
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:43875..45582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101631g1gene5288Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5473rna5473-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25213.1cds5460Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5473 ID=rna5473|Name=rna5473|organism=Nannochloropsis gaditana|type=mRNA|length=369bp
ATGTCTCGACGTTATCTTTGCACACGCTGCGGACCCACTCTCTTCAGGGG
CACAGTGCGTTCGAATCTGGATCTGAGAGGAGAGCACGATGACAGCGCCC
TCCGTCACGCCTTGGCCACCGTCCAGATGACAAGGGAGGGCGGGAGGGAG
GGCGGGAGGGAGGGCGGGTTGAGCATCTCCTTGGACCAGGAGGTGATGGA
GGAAGGGGCGAATTTGTCGGTGGGAGAGCGCCAGCTGCTTTGTTTTGCCC
GCGCGTTGTTAAGGAAGACTTCTGTCGTCGTCATGGACGAAGGTAAGGAT
AAAGAGGGAAGAAGGGAGGGGAGAAAAAGAAATATAGGAAGAGGAGAGCG
AAGCGAGGGAAGGAAGTAA
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protein sequence of rna5473

>rna5473-protein ID=rna5473-protein|Name=rna5473|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLS
QPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNR
AHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPF
SQAVVFSIRSHAELELR
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mRNA from alignment at CM002466.1:43875..45582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5473 ID=rna5473|Name=rna5473|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp|location=Sequence derived from alignment at CM002466.1:43875..45582- (Nannochloropsis gaditana)
ATGGTGGGCGTCGTTCGGTTCGGCGATATGCTGCTGGCTCTGATCGGGGT
GGTGGTGGTAACTGTCTACGCGGTTCCTTCCCTCCTCATCGCGATGGTAA
GGAAACCGCTGGGAGGGGGGTTCGGTAGCCGCCCCGCTCTTTAGCGACGC
ATTCAGCGATCGCTTCCCGGCTCATCATGCACTTCGCAAGGCGGACTGTC
GCCTCGGGGGAAAAGAAATGAATGGACAGTGGTTTGTAAGAGTAATACGC
AAGATGACGTGGATACTGCCATGGAGACGAGCTCCTCCAAAACCCCGGAC
ACGTCCCTTCCTCCCTCCCTCCCTCCATTCCTCCCTCCCTCCCTTAGGCC
CTGGCCCTCCCCCTCTCCCTCCGTCTCGCCTACTCCTTCCTCTCCCTCTC
CCAGCCCCTCAAGCACTACGAGGCCGCTACACGCTCTCCTGTATACAGCC
ACTTCGCCGAGGCTCTGGCAGGACTCATTGTCATCCGTGCCTATGGTCGA
CAGGTCGGGCCACCACGCCCGCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTGCTTCCCTCCTTCCTTCTTTTCTTTTCCTTCTTTTTTCC
TCCCTGCTTCCCTCCCTCCTTCTTGTTCACCTTCCCTCCCTTATTCCCCC
CCCCCCCTCCCTCCCTCCCTCCCTCCTTCCCGCTTCAATTTGCGTCTTCT
CGTTCTGGTTGTTCCTCCTTTGGTGCTGCTTTCTGCCCATTTGCTAATCA
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCGTCTCAGCCCCTCTTCCTCGC
TCGCCTCCACCATGACATGGACGAGAGCAATCGAGCGCATTATTACCTGT
GGCTGACGAATTATTACCTCTCCATGCGTCTTCGCATCCTCGGGTCGCGC
TCCCTCCCTTCCTCCCTCCCTCCCTTCCTCTCTCCCTCCCTTCCTCCCGT
CTTCCTCATCAACTCCCCGTCCTCGTTCCCCTTCCTCCCTCATCTCTCCC
TTTGACCCTCTCTCCTCCTCCCACCCCCCTTTCCCTCCTTCCCTCCTTCC
TTCCCTCCCTCTCTCTTCTCCCCTTCTTCCCTCCCTACCTCTCCCTCCTC
CCCCTCTCCCTTCCTTTTCCTACAGGTGCAGCGGTGGCAGGCGCCACCGC
CTTGGCCGTTACCCTTCAAGCAGCCAGAGGAGGTAAGGATACAGGGACTC
GATCACATATAGATAGCTGCTGGCATTGACACATTGGTTTGAAACGGTCG
TGTATTTTATGCCCTTCATTCGTGCCACGGACCTTCACCTCTGCCTCCCC
TCTTTCTCCTTCCTTTTCCCTCTCCTCCTTCTCCTTCCTTTTCCCTCTCC
TCCTTCTCCTTCCTTTTCCCTCTCCTCCTTCTCCTTCCTTTTCTCTCCCC
TCCTTCTCCTTCCTTTTCCCTCTCATCCTTCTCCTTCCTTTTCTCTCTCC
TCCTTCTCCCTCTTCCCTCCTCCTCCCACCTTTCCCCCTCCTCCCTCTCT
ACCTTTCCTCCTCCTCCCTCCTTTCCCCTCCCCTCCCTCCCTCCCTTCGC
TCCTCCTGCCTTCTTCTCCTCTTCCCCTCCCTCTCTACCTTCCCTCCTCT
TAAGGTATCGACGCGGCGGTGGCGGGATTGGCTCTGACGTACGCCCTTCC
TTTCTCTCAAGCGGTTGTCTTCTCCATACGGAGCCACGCCGAGTTGGAGT
TAAGGTGA
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Coding sequence (CDS) from alignment at CM002466.1:43875..45582-

>rna5473 ID=rna5473|Name=rna5473|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at CM002466.1:43875..45582- (Nannochloropsis gaditana)
GTATCGACGCGGCGGTGGCGGGATTGGCTCTGACGTACGCCCTTCCTTTC
TCTCAAGCGGTTGTCTTCTCCATACGGAGCCACGCCGAGTTGGAGTTAAG
GTGAGTGCAGCGGTGGCAGGCGCCACCGCCTTGGCCGTTACCCTTCAAGC
AGCCAGAGGAGCCCCTCTTCCTCGCTCGCCTCCACCATGACATGGACGAG
AGCAATCGAGCGCATTATTACCTGTGGCTGACGAATTATTACCTCTCCAT
GCGCCCTGGCCCTCCCCCTCTCCCTCCGTCTCGCCTACTCCTTCCTCTCC
CTCTCCCAGCCCCTCAAGCACTACGAGGCCGCTACACGCTCTCCTGTATA
CAGCCACTTCGCCGAGGCTCTGGCAGGACTCATTGTCATCCGTGCCTATG
GTCGACAGATGGTGGGCGTCGTTCGGTTCGGCGATATGCTGCTGGCTCTG
ATCGGGGTGGTGGTGGTAACTGTCTACGCGGTTCCTTCCCTCCTCATCGC
GATGGTATCGACGCGGCGGTGGCGGGATTGGCTCTGACGTACGCCCTTCC
TTTCTCTCAAGCGGTTGTCTTCTCCATACGGAGCCACGCCGAGTTGGAGT
TAAGGTGAGTGCAGCGGTGGCAGGCGCCACCGCCTTGGCCGTTACCCTTC
AAGCAGCCAGAGGAGCCCCTCTTCCTCGCTCGCCTCCACCATGACATGGA
CGAGAGCAATCGAGCGCATTATTACCTGTGGCTGACGAATTATTACCTCT
CCATGCGCCCTGGCCCTCCCCCTCTCCCTCCGTCTCGCCTACTCCTTCCT
CTCCCTCTCCCAGCCCCTCAAGCACTACGAGGCCGCTACACGCTCTCCTG
TATACAGCCACTTCGCCGAGGCTCTGGCAGGACTCATTGTCATCCGTGCC
TATGGTCGACAGATGGTGGGCGTCGTTCGGTTCGGCGATATGCTGCTGGC
TCTGATCGGGGTGGTGGTGGTAACTGTCTACGCGGTTCCTTCCCTCCTCA
TCGCGATGGTATCGACGCGGCGGTGGCGGGATTGGCTCTGACGTACGCCC
TTCCTTTCTCTCAAGCGGTTGTCTTCTCCATACGGAGCCACGCCGAGTTG
GAGTTAAGGTGAGTGCAGCGGTGGCAGGCGCCACCGCCTTGGCCGTTACC
CTTCAAGCAGCCAGAGGAGCCCCTCTTCCTCGCTCGCCTCCACCATGACA
TGGACGAGAGCAATCGAGCGCATTATTACCTGTGGCTGACGAATTATTAC
CTCTCCATGCGCCCTGGCCCTCCCCCTCTCCCTCCGTCTCGCCTACTCCT
TCCTCTCCCTCTCCCAGCCCCTCAAGCACTACGAGGCCGCTACACGCTCT
CCTGTATACAGCCACTTCGCCGAGGCTCTGGCAGGACTCATTGTCATCCG
TGCCTATGGTCGACAGATGGTGGGCGTCGTTCGGTTCGGCGATATGCTGC
TGGCTCTGATCGGGGTGGTGGTGGTAACTGTCTACGCGGTTCCTTCCCTC
CTCATCGCGATGGTATCGACGCGGCGGTGGCGGGATTGGCTCTGACGTAC
GCCCTTCCTTTCTCTCAAGCGGTTGTCTTCTCCATACGGAGCCACGCCGA
GTTGGAGTTAAGGTGAGTGCAGCGGTGGCAGGCGCCACCGCCTTGGCCGT
TACCCTTCAAGCAGCCAGAGGAGCCCCTCTTCCTCGCTCGCCTCCACCAT
GACATGGACGAGAGCAATCGAGCGCATTATTACCTGTGGCTGACGAATTA
TTACCTCTCCATGCGCCCTGGCCCTCCCCCTCTCCCTCCGTCTCGCCTAC
TCCTTCCTCTCCCTCTCCCAGCCCCTCAAGCACTACGAGGCCGCTACACG
CTCTCCTGTATACAGCCACTTCGCCGAGGCTCTGGCAGGACTCATTGTCA
TCCGTGCCTATGGTCGACAGATGGTGGGCGTCGTTCGGTTCGGCGATATG
CTGCTGGCTCTGATCGGGGTGGTGGTGGTAACTGTCTACGCGGTTCCTTC
CCTCCTCATCGCGATGGTATCGACGCGGCGGTGGCGGGATTGGCTCTGAC
GTACGCCCTTCCTTTCTCTCAAGCGGTTGTCTTCTCCATACGGAGCCACG
CCGAGTTGGAGTTAAGGTGAGTGCAGCGGTGGCAGGCGCCACCGCCTTGG
CCGTTACCCTTCAAGCAGCCAGAGGAGCCCCTCTTCCTCGCTCGCCTCCA
CCATGACATGGACGAGAGCAATCGAGCGCATTATTACCTGTGGCTGACGA
ATTATTACCTCTCCATGCGCCCTGGCCCTCCCCCTCTCCCTCCGTCTCGC
CTACTCCTTCCTCTCCCTCTCCCAGCCCCTCAAGCACTACGAGGCCGCTA
CACGCTCTCCTGTATACAGCCACTTCGCCGAGGCTCTGGCAGGACTCATT
GTCATCCGTGCCTATGGTCGACAGATGGTGGGCGTCGTTCGGTTCGGCGA
TATGCTGCTGGCTCTGATCGGGGTGGTGGTGGTAACTGTCTACGCGGTTC
CTTCCCTCCTCATCGCGATG
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Synonyms
Publications