EWM25213.1, cds5460 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|585106892|gb|EWM25213.1| (atp-dependent bile acid permease [Nannochloropsis gaditana]) HSP 1 Score: 326.635 bits (836), Expect = 5.545e-113 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR
Sbjct: 1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|298712599|emb|CBJ33298.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 119.783 bits (299), Expect = 2.997e-28 Identity = 61/161 (37.89%), Postives = 102/161 (63.35%), Query Frame = 0
Query: 11 LLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGAT----ALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
L + + +V V VY VP L++A+ L++ L + +L+ S+ LK ++ ++SP+Y+HF E++ G+ IRA+G Q F+ +D+ NRAH+YLW++N + ++R + GAT A A + + I+A VAGLAL YAL F+ +V + +R HA LE++
Sbjct: 1134 LFSALSIVTVIVYTVPFLILALVPISCLAIVLGHRYLNASRELKRLDSVSKSPIYAHFTESVNGVSTIRAFGAQARFVEESCRRVDKCNRAHFYLWVSNRWFNVRIQLVGATVAFLAGAFVVWWGKDHIEATVAGLALLYALQFTDSVKYLVRQHALLEMQ 1294
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|298712063|emb|CBJ26643.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 116.701 bits (291), Expect = 3.546e-27 Identity = 66/169 (39.05%), Postives = 103/169 (60.95%), Query Frame = 0
Query: 1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVT---LQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
M V + DMLL ++GVVVV A+P+L +AM L L + +L S+ LK EA TRSP+Y+HF E+++G+ IRAY + F+ ++ NRAH+ LW +NY+L+ R + GA A+ L + +D + AGL +TY+L F+ +VF++R HA++E+
Sbjct: 1051 MNDVSSYSDMLLGVVGVVVVIATAIPALTVAMIPVLGLCYYYSNRYLQTSRQLKRLEAVTRSPLYAHFGESVSGVATIRAYEAEKRFIQGNEDRVNNLNRAHFSLWCSNYWLTNRVRMIGAAVCALVGGFLVGSVSSVDGSTAGLVITYSLNFTLTIVFTVRLHAQMEM 1219
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|255726772|ref|XP_002548312.1| (ATP-dependent bile acid permease [Candida tropicalis MYA-3404] >gi|240134236|gb|EER33791.1| ATP-dependent bile acid permease [Candida tropicalis MYA-3404]) HSP 1 Score: 113.235 bits (282), Expect = 6.300e-26 Identity = 54/159 (33.96%), Postives = 98/159 (61.64%), Query Frame = 0
Query: 11 LLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVT---LQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
L+ + ++++ + P LI + L + Y +L+LS+ LK +E+ T+SP++ HF+E+L+G+ IRAYG + F+ + +D +NR +YLW+ N +LS R G+ + T + A G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1183 LVQCVSILILITFITPGFLIFAVIISFLYYLVGYFYLTLSRELKRFESVTKSPIHQHFSESLSGVATIRAYGIESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDAVGSLVMLFTGVFILLAVGKIDAGLAGLSLSYAIAFSESALWIVRLYANVEM 1341
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|459367080|gb|EMG46193.1| (ATP-dependent bile acid permease [Candida maltosa Xu316]) HSP 1 Score: 110.153 bits (274), Expect = 6.226e-25 Identity = 58/162 (35.80%), Postives = 103/162 (63.58%), Query Frame = 0
Query: 11 LLALIGVVVVTVYAVPSLL-IAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGA-----TALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
L+ + ++V+ + P L +A+ +A+ L + + +L+LS+ LK YE+ T+SP++ HF+E+L+G+ IRAYG + F+ +D++NR +YLW+ N +LS R G+ T + V LQ G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1178 LVQCVSILVLITFITPGFLFLAIVIAIFYYL-VGFFYLTLSRELKRYESITKSPIHQHFSESLSGVATIRAYGVEQRFMMENLKSIDKNNRPFFYLWVANRWLSFRIDAVGSMVMLFTGVFVLLQV--GNIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1336
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|354548589|emb|CCE45326.1| (hypothetical protein CPAR2_703390 [Candida parapsilosis]) HSP 1 Score: 109.768 bits (273), Expect = 8.324e-25 Identity = 52/155 (33.55%), Postives = 96/155 (61.94%), Query Frame = 0
Query: 15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
I ++++ + P L+ + L + + +L+LS+ LK YE+ T+SP++ HF+E+L G+ IRAYG + F+ + +D +NR +YLW+ N +LS R V G+ + + + + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1181 ISILILITFITPGFLVFAFVIAFLYYLVGFFYLNLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1335
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|448516484|ref|XP_003867583.1| (hypothetical protein CORT_0B04390 [Candida orthopsilosis Co 90-125] >gi|380351922|emb|CCG22146.1| hypothetical protein CORT_0B04390 [Candida orthopsilosis]) HSP 1 Score: 109.768 bits (273), Expect = 1.049e-24 Identity = 51/155 (32.90%), Postives = 96/155 (61.94%), Query Frame = 0
Query: 15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
+ ++++ + P L+ + L + + +L+LS+ LK YE+ T+SP++ HF+E+L G+ IRAYG + F+ + +D +NR +YLW+ N +LS R V G+ + + + + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1180 VSILILITFITPGFLVFAFVIAFLYYLVGFFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1334
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|354543559|emb|CCE40278.1| (hypothetical protein CPAR2_103160 [Candida parapsilosis]) HSP 1 Score: 109.768 bits (273), Expect = 1.081e-24 Identity = 51/155 (32.90%), Postives = 96/155 (61.94%), Query Frame = 0
Query: 15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
+ ++++ + P L+ + L + + +L+LS+ LK YE+ T+SP++ HF+E+L G+ IRAYG + F+ + +D +NR +YLW+ N +LS R V G+ + + + + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1182 VSILILITFITPGFLVFAFVIAFLYYLVGFFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1336
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|385306064|gb|EIF49999.1| (atp-dependent bile acid permease [Brettanomyces bruxellensis AWRI1499]) HSP 1 Score: 109.383 bits (272), Expect = 1.120e-24 Identity = 54/161 (33.54%), Postives = 98/161 (60.87%), Query Frame = 0
Query: 10 MLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARG---GIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
ML++ I +VV P+ ++ + L L R+ +L+LS+ LK YE+ TRSP++ HF E L G+ IRAY + F+ + +D +NR +Y+WL N +L+MRA + G+ ++ A ID+ +AG++L++A+ F+ + ++ +R++AE+E+
Sbjct: 928 MLISCISTIVVITLITPAFIVFAVVILILYTRVGTYYLNLSRDLKRYESITRSPIHQHFTETLNGVATIRAYCDESRFMVQNMLRIDTNNRPFFYVWLNNRWLAMRADIIGSAVSFLSAALAVAAARNIDSGLAGISLSFAVTFNDSALWLMRTYAEVEIN 1088
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|149245464|ref|XP_001527210.1| (ATP-dependent bile acid permease [Lodderomyces elongisporus NRRL YB-4239] >gi|146449604|gb|EDK43860.1| ATP-dependent bile acid permease [Lodderomyces elongisporus NRRL YB-4239]) HSP 1 Score: 107.842 bits (268), Expect = 3.779e-24 Identity = 51/155 (32.90%), Postives = 92/155 (59.35%), Query Frame = 0
Query: 15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
I +++ P LI + + Y +L+LS+ LK YE+ T+SP++ HF+E+L G+ IRAYG + F+ + +D +NR +YLW+ N +LS R G+ + + + + G IDA +AGL+L+YA+ FS++ ++ +R ++ +E+
Sbjct: 528 ISTLILITAITPGFLIFAVIISFFYYLVGYFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGIESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRVDAVGSLVMLFAGIFVLLSVGKIDAGLAGLSLSYAIAFSESALWIVRLYSNVEM 682 The following BLAST results are available for this feature:
BLAST of EWM25213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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