EWM25213.1, cds5460 (CDS) Nannochloropsis gaditana

Overview
NameEWM25213.1
Unique Namecds5460
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:45487..45582 -
Alignment locationCM002466.1:45080..45235 -
Alignment locationCM002466.1:44706..44796 -
Alignment locationCM002466.1:44401..44457 -
Alignment locationCM002466.1:43875..43978 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25213.1
Productatp-dependent bile acid permease
Orig transcript idgnl|cribi|Naga_101631g1.4297.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:45487..45582 -
CM002466.1supercontigCM002466.1:45080..45235 -
CM002466.1supercontigCM002466.1:44706..44796 -
CM002466.1supercontigCM002466.1:44401..44457 -
CM002466.1supercontigCM002466.1:43875..43978 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom
Homology
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|585106892|gb|EWM25213.1| (atp-dependent bile acid permease [Nannochloropsis gaditana])

HSP 1 Score: 326.635 bits (836), Expect = 5.545e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
            MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR
Sbjct:    1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|298712599|emb|CBJ33298.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.783 bits (299), Expect = 2.997e-28
Identity = 61/161 (37.89%), Postives = 102/161 (63.35%), Query Frame = 0
Query:   11 LLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGAT----ALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
            L + + +V V VY VP L++A+     L++ L + +L+ S+ LK  ++ ++SP+Y+HF E++ G+  IRA+G Q  F+      +D+ NRAH+YLW++N + ++R  + GAT    A A  +   +  I+A VAGLAL YAL F+ +V + +R HA LE++
Sbjct: 1134 LFSALSIVTVIVYTVPFLILALVPISCLAIVLGHRYLNASRELKRLDSVSKSPIYAHFTESVNGVSTIRAFGAQARFVEESCRRVDKCNRAHFYLWVSNRWFNVRIQLVGATVAFLAGAFVVWWGKDHIEATVAGLALLYALQFTDSVKYLVRQHALLEMQ 1294          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|298712063|emb|CBJ26643.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.701 bits (291), Expect = 3.546e-27
Identity = 66/169 (39.05%), Postives = 103/169 (60.95%), Query Frame = 0
Query:    1 MVGVVRFGDMLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVT---LQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            M  V  + DMLL ++GVVVV   A+P+L +AM   L L    +  +L  S+ LK  EA TRSP+Y+HF E+++G+  IRAY  +  F+      ++  NRAH+ LW +NY+L+ R  + GA   A+    L  +   +D + AGL +TY+L F+  +VF++R HA++E+
Sbjct: 1051 MNDVSSYSDMLLGVVGVVVVIATAIPALTVAMIPVLGLCYYYSNRYLQTSRQLKRLEAVTRSPLYAHFGESVSGVATIRAYEAEKRFIQGNEDRVNNLNRAHFSLWCSNYWLTNRVRMIGAAVCALVGGFLVGSVSSVDGSTAGLVITYSLNFTLTIVFTVRLHAQMEM 1219          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|255726772|ref|XP_002548312.1| (ATP-dependent bile acid permease [Candida tropicalis MYA-3404] >gi|240134236|gb|EER33791.1| ATP-dependent bile acid permease [Candida tropicalis MYA-3404])

HSP 1 Score: 113.235 bits (282), Expect = 6.300e-26
Identity = 54/159 (33.96%), Postives = 98/159 (61.64%), Query Frame = 0
Query:   11 LLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVT---LQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            L+  + ++++  +  P  LI   +   L   + Y +L+LS+ LK +E+ T+SP++ HF+E+L+G+  IRAYG +  F+ +    +D +NR  +YLW+ N +LS R    G+  +  T   +  A G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1183 LVQCVSILILITFITPGFLIFAVIISFLYYLVGYFYLTLSRELKRFESVTKSPIHQHFSESLSGVATIRAYGIESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDAVGSLVMLFTGVFILLAVGKIDAGLAGLSLSYAIAFSESALWIVRLYANVEM 1341          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|459367080|gb|EMG46193.1| (ATP-dependent bile acid permease [Candida maltosa Xu316])

HSP 1 Score: 110.153 bits (274), Expect = 6.226e-25
Identity = 58/162 (35.80%), Postives = 103/162 (63.58%), Query Frame = 0
Query:   11 LLALIGVVVVTVYAVPSLL-IAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGA-----TALAVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            L+  + ++V+  +  P  L +A+ +A+   L + + +L+LS+ LK YE+ T+SP++ HF+E+L+G+  IRAYG +  F+      +D++NR  +YLW+ N +LS R    G+     T + V LQ   G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1178 LVQCVSILVLITFITPGFLFLAIVIAIFYYL-VGFFYLTLSRELKRYESITKSPIHQHFSESLSGVATIRAYGVEQRFMMENLKSIDKNNRPFFYLWVANRWLSFRIDAVGSMVMLFTGVFVLLQV--GNIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1336          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|354548589|emb|CCE45326.1| (hypothetical protein CPAR2_703390 [Candida parapsilosis])

HSP 1 Score: 109.768 bits (273), Expect = 8.324e-25
Identity = 52/155 (33.55%), Postives = 96/155 (61.94%), Query Frame = 0
Query:   15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            I ++++  +  P  L+   +   L   + + +L+LS+ LK YE+ T+SP++ HF+E+L G+  IRAYG +  F+ +    +D +NR  +YLW+ N +LS R  V G+  +    + +  + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1181 ISILILITFITPGFLVFAFVIAFLYYLVGFFYLNLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1335          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|448516484|ref|XP_003867583.1| (hypothetical protein CORT_0B04390 [Candida orthopsilosis Co 90-125] >gi|380351922|emb|CCG22146.1| hypothetical protein CORT_0B04390 [Candida orthopsilosis])

HSP 1 Score: 109.768 bits (273), Expect = 1.049e-24
Identity = 51/155 (32.90%), Postives = 96/155 (61.94%), Query Frame = 0
Query:   15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            + ++++  +  P  L+   +   L   + + +L+LS+ LK YE+ T+SP++ HF+E+L G+  IRAYG +  F+ +    +D +NR  +YLW+ N +LS R  V G+  +    + +  + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1180 VSILILITFITPGFLVFAFVIAFLYYLVGFFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1334          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|354543559|emb|CCE40278.1| (hypothetical protein CPAR2_103160 [Candida parapsilosis])

HSP 1 Score: 109.768 bits (273), Expect = 1.081e-24
Identity = 51/155 (32.90%), Postives = 96/155 (61.94%), Query Frame = 0
Query:   15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            + ++++  +  P  L+   +   L   + + +L+LS+ LK YE+ T+SP++ HF+E+L G+  IRAYG +  F+ +    +D +NR  +YLW+ N +LS R  V G+  +    + +  + G IDA +AGL+L+YA+ FS++ ++ +R +A +E+
Sbjct: 1182 VSILILITFITPGFLVFAFVIAFLYYLVGFFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGVESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRIDVVGSLVMFFAGIFVLLSIGKIDAGLAGLSLSYAIAFSESALWVVRLYANVEM 1336          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|385306064|gb|EIF49999.1| (atp-dependent bile acid permease [Brettanomyces bruxellensis AWRI1499])

HSP 1 Score: 109.383 bits (272), Expect = 1.120e-24
Identity = 54/161 (33.54%), Postives = 98/161 (60.87%), Query Frame = 0
Query:   10 MLLALIGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATALAVTLQAARG---GIDAAVAGLALTYALPFSQAVVFSIRSHAELELR 167
            ML++ I  +VV     P+ ++   + L L  R+   +L+LS+ LK YE+ TRSP++ HF E L G+  IRAY  +  F+ +    +D +NR  +Y+WL N +L+MRA + G+    ++   A      ID+ +AG++L++A+ F+ + ++ +R++AE+E+ 
Sbjct:  928 MLISCISTIVVITLITPAFIVFAVVILILYTRVGTYYLNLSRDLKRYESITRSPIHQHFTETLNGVATIRAYCDESRFMVQNMLRIDTNNRPFFYVWLNNRWLAMRADIIGSAVSFLSAALAVAAARNIDSGLAGISLSFAVTFNDSALWLMRTYAEVEIN 1088          
BLAST of EWM25213.1 vs. NCBI_GenBank
Match: gi|149245464|ref|XP_001527210.1| (ATP-dependent bile acid permease [Lodderomyces elongisporus NRRL YB-4239] >gi|146449604|gb|EDK43860.1| ATP-dependent bile acid permease [Lodderomyces elongisporus NRRL YB-4239])

HSP 1 Score: 107.842 bits (268), Expect = 3.779e-24
Identity = 51/155 (32.90%), Postives = 92/155 (59.35%), Query Frame = 0
Query:   15 IGVVVVTVYAVPSLLIAMALALPLSLRLAYSFLSLSQPLKHYEAATRSPVYSHFAEALAGLIVIRAYGRQPLFLARLHHDMDESNRAHYYLWLTNYYLSMRAAVAGATAL---AVTLQAARGGIDAAVAGLALTYALPFSQAVVFSIRSHAELEL 166
            I  +++     P  LI   +       + Y +L+LS+ LK YE+ T+SP++ HF+E+L G+  IRAYG +  F+ +    +D +NR  +YLW+ N +LS R    G+  +    + +  + G IDA +AGL+L+YA+ FS++ ++ +R ++ +E+
Sbjct:  528 ISTLILITAITPGFLIFAVIISFFYYLVGYFYLTLSRELKRYESITKSPIHQHFSESLTGVATIRAYGIESRFMKQNLQAIDNNNRPFFYLWVANRWLSFRVDAVGSLVMLFAGIFVLLSVGKIDAGLAGLSLSYAIAFSESALWIVRLYSNVEM 682          
The following BLAST results are available for this feature:
BLAST of EWM25213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106892|gb|EWM25213.1|5.545e-113100.00atp-dependent bile acid permease [Nannochloropsis ... [more]
gi|298712599|emb|CBJ33298.1|2.997e-2837.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|298712063|emb|CBJ26643.1|3.546e-2739.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|255726772|ref|XP_002548312.1|6.300e-2633.96ATP-dependent bile acid permease [Candida tropical... [more]
gi|459367080|gb|EMG46193.1|6.226e-2535.80ATP-dependent bile acid permease [Candida maltosa ... [more]
gi|354548589|emb|CCE45326.1|8.324e-2533.55hypothetical protein CPAR2_703390 [Candida parapsi... [more]
gi|448516484|ref|XP_003867583.1|1.049e-2432.90hypothetical protein CORT_0B04390 [Candida orthops... [more]
gi|354543559|emb|CCE40278.1|1.081e-2432.90hypothetical protein CPAR2_103160 [Candida parapsi... [more]
gi|385306064|gb|EIF49999.1|1.120e-2433.54atp-dependent bile acid permease [Brettanomyces br... [more]
gi|149245464|ref|XP_001527210.1|3.779e-2432.90ATP-dependent bile acid permease [Lodderomyces elo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5473rna5473Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications