rna5469, rna5469 (mRNA) Nannochloropsis gaditana

Overview
Namerna5469
Unique Namerna5469
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length774
Alignment locationCM002466.1:24627..25619 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100751g1.1615.mrna
Orig protein idgnl|cribi|Naga_100751g1.1615
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:24627..25619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100751g1gene5284Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5469rna5469-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25217.1cds5456Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5469 ID=rna5469|Name=rna5469|organism=Nannochloropsis gaditana|type=mRNA|length=774bp
ATGTATCCTCATTCCTACCAGGCTTTTCTTCCATTTTCCTGCATCACCAG
GACAGGCTCCCGCTGTGTAGATCGCCCGAAGGACCTGAAAAGCAGCAGCT
GTTCGGAAGTCACACGTAGTAGCCCGCCCAGTCCTATGCCCCGAATTACT
TGCTCCCCTTCTCTCCGTGATCCGTTTTTCCTTCTGCTCGTTGTCGTCAC
CATGTTACATTGGCGTAGCCTCTTCGTCGCTGCGCATGGTGCAGTGGGTC
GGAGCGGCGCATTTTTGGTTCCAACCGCTTTTGGCGGATCATCATCCCGC
TCAAGCATGCGGGGCCGCCTCATTCCTCCGTACCGCCTCATGAGTACCAC
ACTTCCCAATCCGAGTGTATCCGATCCCAAATCAGTTCCTACTCCACCAT
CCTCCTCCATACCTGATTACAATCACCGCGACGCCCTCACGTCTAGGGAT
GGACTGCCTCTCGTCTACGAGCCCAAAACCATCAAGAAGTACTGGGACGC
ACGCCCGGCGGAGATGCAGCGTCGATGGGCACTTTTCCTGAGCGTGACAG
CACCATTTTTAACCAAATTGGTTAAGGGATTTACCCAGGGCACATTGTTT
GACAAGGAGGCAGAGCTGGCTCGAGACCTGCGGATTGTCTTGGAAAAGCT
CGGGCCCACGTTCGTCAAGCTCGGACAAGCCCTCTCGATCCGCCCGGACG
TGATCGGGCCCGCTGCCACGGAGGAGCTACAGAAGCTTCAAGACGCGGAG
AGCTCGGGTGCCCGTGGCAGGTGA
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protein sequence of rna5469

>rna5469-protein ID=rna5469-protein|Name=rna5469|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MSVLEGQANWGGLPRPDRVVAWLTSVNAEDLLDVARLLQPGTSSSKNIVD
FATEVVRGLLTERAIPRVRKAAAGLGGVDTRMSSSVERNGMGKKRAEGDG
RRKMEGKGGAQALEEMERGRPTGL
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mRNA from alignment at CM002466.1:24627..25619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5469 ID=rna5469|Name=rna5469|organism=Nannochloropsis gaditana|type=mRNA|length=993bp|location=Sequence derived from alignment at CM002466.1:24627..25619+ (Nannochloropsis gaditana)
cctaGAGGTAACCAACACAggcgacctcctcttccgacAACAGTTCCGTC
Gtaccgccgccctcctccctcgcccgttccccttccttccccccgtcctc
cccccctctctcatCGACGAGCTCgcgccccccctgtccctcgaggaaga
ggtcttCCTGGGATCGGTGGCGGAGCTGGGGGCTACTTtagtaggggagg
aagggatgagcGTGCTGGAAGGACAAGCGAACTGGGGGGGACTGCCCCGG
CCAGACCGGGTGGTGGCGTGGTTGACCAGCGTCAATGCGGAGGATTtggt
gagggtgggagggtgggaggaagggagggagggagggagggaggggggaa
agagggagtgagggagggagggagggagggaggggtctcTCTTGGATCAG
GGGGTACATGTCAACCTGTAAGCCGTGAATTCTATTTTTTGACTTCTTCA
CCATTTCTTTGGTAACCCGCAAATAGCTGGATGTGGCACGTCTGTTGCAG
CCGGGAACGTCATCGAGTAAAAACATCGTGGACTTTGCCACTGAGGTGGT
GCGCGGACTCCTGACAGAAAGGGCGATACCGAGGGTCAGgaaagcggcgg
cgggaCTGGGTGGCGTGGATACAAGGATGTCATCTTCCGTGGAGAGGAAC
GGAATGGGCAAAAAGAGAGCGGAGGGCGATGGGCgaaggaaaatggaagg
aaagggaggggctcAAGCCCTAGAGGAAATGGAACGGGGACGGCCAACGG
GTTTATGATAAAgtcaaaaaaggaaagccaCCTATGGAATTCACGTGCGG
CAGCTATAGATGTGCGAAAAAAAGTTGTGGTTGTAGTATTTGTTATCATC
CCAAGAGGATCGAACTTGTCAAAGCGCTTCATCAATATTGACGTACCATC
TGCCTATGCAGTATTCTTATTGTGGTACTTAATTCACCAGACTACCAACT
ACTCTTCGTGAAACCGGTCTCAGGTTGTTGTTGGACTACATCT
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Coding sequence (CDS) from alignment at CM002466.1:24627..25619+

>rna5469 ID=rna5469|Name=rna5469|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002466.1:24627..25619+ (Nannochloropsis gaditana)
atgagcGTGCTGGAAGGACAAGCGAACTGGGGGGGACTGCCCCGGCCAGA
CCGGGTGGTGGCGTGGTTGACCAGCGTCAATGCGGAGGATTtgCTGGATG
TGGCACGTCTGTTGCAGCCGGGAACGTCATCGAGTAAAAACATCGTGGAC
TTTGCCACTGAGGTGGTGCGCGGACTCCTGACAGAAAGGGCGATACCGAG
GGTCAGgaaagcggcggcgggaCTGGGTGGCGTGGATACAAGGATGTCAT
CTTCCGTGGAGAGGAACGGAATGGGCAAAAAGAGAGCGGAGGGCGATGGG
CgaaggaaaatggaaggaaagggaggggctcAAGCCCTAGAGGAAATGGA
ACGGGGACGGCCAACGGGTTTATGAatgagcGTGCTGGAAGGACAAGCGA
ACTGGGGGGGACTGCCCCGGCCAGACCGGGTGGTGGCGTGGTTGACCAGC
GTCAATGCGGAGGATTtgCTGGATGTGGCACGTCTGTTGCAGCCGGGAAC
GTCATCGAGTAAAAACATCGTGGACTTTGCCACTGAGGTGGTGCGCGGAC
TCCTGACAGAAAGGGCGATACCGAGGGTCAGgaaagcggcggcgggaCTG
GGTGGCGTGGATACAAGGATGTCATCTTCCGTGGAGAGGAACGGAATGGG
CAAAAAGAGAGCGGAGGGCGATGGGCgaaggaaaatggaaggaaagggag
gggctcAAGCCCTAGAGGAAATGGAACGGGGACGGCCAACGGGTTTATGA
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Synonyms
Publications