rna5468, rna5468 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5468
Unique Name	rna5468
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1281
Alignment location	CM002466.1:20839..22313 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101194g1.9857.mrna
Orig protein id	gnl\|cribi\|Naga_101194g1.9857
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:20839..22313 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101194g1	gene5283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5468	rna5468-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25218.1	cds5455	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:20839..22313+
coding sequence from alignment at CM002466.1:20839..22313+

mRNA sequence

>rna5468 ID=rna5468|Name=rna5468|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp
AAAGCATAGAGCGGAGATGCGCGTGCGTCATGTTCCCAAGTCTTTTTTGT
TGTTTTGTAAAAATGCGCGAATGGTATGGGCAGGGACAGTACCCGACAAG
TCGAGAGATCGACATCGAGTCTTGGACGAATCCGGTCTGGCTGTCTTGAA
GTCTTCTGGCAATCATGAGTACTATATACTGTACGGGTTGTAATTATACA
TCGAACTTCACTGCCTACACACTTTCCTACGTCTCTAGACGACATGCCTT
TTCAGCTCCTCAAGAGGCCTCTTCCGGAGGGCCTCTGCCACGGGGTGAAG
TTACCTCGTCACCCCCACGAGCTCCCTCTCCAAAATGTTCTCTTGCCCTC
CTCGACGAACAGCATCACCCATTATTCTCTTCTTAATCATTGTTCACCGC
TTAGAGGCCTTTGTAGTTATTTCTAGTTCCATCTTAGATGTTCAACGACC
TCTTTTGGCTATGCCAGAGCAAACAGATCCCAATGAAATTTACAATGCTT
TATTGATGCTTTTGACTATCTCATGGTATTGACGGTTTTGGTGTCCGAGA
TTTTCTGTAGGATTCAGTGTCTGATAGTAAAAGGAGAGCATCGTTCACAT
TTTGACAGTGCCGGGCACGCCAGTCTAGAAAAATGGGATATTTGCAAGGT
TTTTGGTGCCAAGTTAATATTGAGAGGCGCAACACGTCGCCAACAAAGAT
TGCCGGAATGTACAACGAAGCTATTAGGGGTCTCTCAACGAAGCCATTAG
TAGTTTCTCACGAGGTGCCAGAAATGGATTGGCGGCAATTATCTGCACCG
GTCAAAATATTGATACCGCCGAGTGCACACTCACTTAGAAGGAAATGCGG
TAAATTGTCAGCTCATATTAGTCTAGAAGAATCAACGAGATTCTTCTTTT
TAAGTCTTAAAGAGTTTGTGAGTACAAACACAAAGTAGGCAGTAAAGGAC
ATAAAAGATGACAACTTTCATAGTATTGGGCACCCTGGAAGTCTCAAAGA
GATCTTGTCATTAGTTTTGCGTATAGACTTTTTTAAACCACGATAGGAAG
CATCAAAGGGTGATGTCATACTTGATAATTACTCTTTTTCGACGTCGAGC
AAGGAAATAGTTCCCACGAGCAATCAAGCAAAGACCATAATTGGTGGCGC
TTCTAACGAAAATATCAATGCTCTATATTAGGTACAAAAGAAGCCTATTA
TAGTGTGCGCTCAAGTAAAGTCCGGATATGAGTTTAGAAAGATGGCTTGC
TTTATAATAGAAAGTCATATTTACCTGCTCT

protein sequence of rna5468

>rna5468-protein ID=rna5468-protein|Name=rna5468|organism=Nannochloropsis gaditana|type=polypeptide|length=257bp
MYPHSYQAFLPFSCITRTGSRCVDRPKDLKSSSCSEVTRSSPPSPMPRIT
CSPSLRDPFFLLLVVVTMLHWRSLFVAAHGAVGRSGAFLVPTAFGGSSSR
SSMRGRLIPPYRLMSTTLPNPSVSDPKSVPTPPSSSIPDYNHRDALTSRD
GLPLVYEPKTIKKYWDARPAEMQRRWALFLSVTAPFLTKLVKGFTQGTLF
DKEAELARDLRIVLEKLGPTFVKLGQALSIRPDVIGPAATEELQKLQDAE
SSGARGR

mRNA from alignment at CM002466.1:20839..22313+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5468 ID=rna5468|Name=rna5468|organism=Nannochloropsis gaditana|type=mRNA|length=1475bp|location=Sequence derived from alignment at CM002466.1:20839..22313+ (Nannochloropsis gaditana)
ATGTATCCTCATTCCTACCAGGcttttcttccattttcctgcATCACCAG
GACAGGCTCCCGCTGTGTAGATCGCCCGAAGGACCTGAAAAGCAGCAGCT
GTTCGGAAGTCACACGTAGTAGCCCGCCCAGTCCTATGCCCCGAATTACt
tgctccccttctctccgtGATCCGTTTTTCCTTCTGCTCGTTGTCGTCAC
CATGTTACATTGGCGTAGCCTCTTCGTCGCTGCGCATGGTGCAGTGGGTC
GGAGCGGCGCATTTTTGGTTCCAACCGCTTTTGGCGGATCATCATCCCGC
TCAAGCATGCGGGGCCGCCTCATTCCTCCGTACCGCCTCATGAGTACCAC
ACTTCCCAATCCGAGTGTATCCGATCCCAAATCAGTTCCTactccaccat
cctcctccataccTGATTACAATCACCGCGACGCCCTCACGTCTAGGGAT
GGACTGCCTCTCGTCTACGAGCCCAAAACCATCAAGAAGTACTGGGACGC
ACGCCCGGCGGAGATGCAGCGTCGATGGGCACTTTTCCTGAGCGTGACAG
CACCATTTTTAACCAAATTGGGTAAGAGGCTGGGAAACGCAAGGGTCTGG
GAGGAGACGGAtctggaggaaggaaagactAACcaagtgagggggaggag
gaggatggaggaggaaggggaggtaaTAAGGAGGTGCCGGAGGTAGCCAG
ACGTTGAGCGGGGGATGCGGTGCAGAAATAGACGCAAGAACAGGAGGGAT
AAAGTAGCTGAGGGGTTGTACACCCCAAGACGATGCACAGAACGGTCAGG
AATATGGCCAGGTGGCCTGAcctgccaccctccttccctccctccttccc
tccctccctccctccctccctccctctgttcgCTCCTCTGTCTCATGACC
CTTAGTTAAGGGATTTACCCAGGGCACATTGTTTGACAAGGAGGCAGAGC
TGGCTCGAGACCTGCGGATTGTCTTGGAAAAGCTCGGGCCCACGTTCGTC
AAGCTCGGTAAGCCTCTCGAccggtccttcccctcgtcctttgCACCCCA
TTTATGCTCTATCTTGTCTCTTTCTTGTAAGATACTCGCCCCTTTGCATC
CCGCTTCCTCATCCTGCGGTCACcgtgccgtctcctcctttgtttctcct
attcccctccttgctACCTCTGCTTCTgatttcccttttcctctttcact
ACAAGAACATGCATGCACATGCACCCTATCCCTCTCTGCTCCCTTTCTAC
TCAAACATACGTCCTCGCATTCTTGAAacttcccccgtccctccttccct
ccctccctccctccctcctcgccttcctcagGACAAGCCCTCTCGATCCG
CCCGGACGTGATCGGGCCCGCTGCCACGGAGGAGCTACAGAAGCTTCAAG
ACgcggtccctcccttctccaacgACGTGGCATTCGCCATACTGGAAGGA
GAGCTCGGGTGCCCGTGGCAGGTGA

Coding sequence (CDS) from alignment at CM002466.1:20839..22313+

>rna5468 ID=rna5468|Name=rna5468|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at CM002466.1:20839..22313+ (Nannochloropsis gaditana)
ATGTATCCTCATTCCTACCAGGcttttcttccattttcctgcATCACCAG
GACAGGCTCCCGCTGTGTAGATCGCCCGAAGGACCTGAAAAGCAGCAGCT
GTTCGGAAGTCACACGTAGTAGCCCGCCCAGTCCTATGCCCCGAATTACt
tgctccccttctctccgtGATCCGTTTTTCCTTCTGCTCGTTGTCGTCAC
CATGTTACATTGGCGTAGCCTCTTCGTCGCTGCGCATGGTGCAGTGGGTC
GGAGCGGCGCATTTTTGGTTCCAACCGCTTTTGGCGGATCATCATCCCGC
TCAAGCATGCGGGGCCGCCTCATTCCTCCGTACCGCCTCATGAGTACCAC
ACTTCCCAATCCGAGTGTATCCGATCCCAAATCAGTTCCTactccaccat
cctcctccataccTGATTACAATCACCGCGACGCCCTCACGTCTAGGGAT
GGACTGCCTCTCGTCTACGAGCCCAAAACCATCAAGAAGTACTGGGACGC
ACGCCCGGCGGAGATGCAGCGTCGATGGGCACTTTTCCTGAGCGTGACAG
CACCATTTTTAACCAAATTGGTTAAGGGATTTACCCAGGGCACATTGTTT
GACAAGGAGGCAGAGCTGGCTCGAGACCTGCGGATTGTCTTGGAAAAGCT
CGGGCCCACGTTCGTCAAGCTCGGACAAGCCCTCTCGATCCGCCCGGACG
TGATCGGGCCCGCTGCCACGGAGGAGCTACAGAAGCTTCAAGACgcgGAG
AGCTCGGGTGCCCGTGGCAGGTGAATGTATCCTCATTCCTACCAGGcttt
tcttccattttcctgcATCACCAGGACAGGCTCCCGCTGTGTAGATCGCC
CGAAGGACCTGAAAAGCAGCAGCTGTTCGGAAGTCACACGTAGTAGCCCG
CCCAGTCCTATGCCCCGAATTACttgctccccttctctccgtGATCCGTT
TTTCCTTCTGCTCGTTGTCGTCACCATGTTACATTGGCGTAGCCTCTTCG
TCGCTGCGCATGGTGCAGTGGGTCGGAGCGGCGCATTTTTGGTTCCAACC
GCTTTTGGCGGATCATCATCCCGCTCAAGCATGCGGGGCCGCCTCATTCC
TCCGTACCGCCTCATGAGTACCACACTTCCCAATCCGAGTGTATCCGATC
CCAAATCAGTTCCTactccaccatcctcctccataccTGATTACAATCAC
CGCGACGCCCTCACGTCTAGGGATGGACTGCCTCTCGTCTACGAGCCCAA
AACCATCAAGAAGTACTGGGACGCACGCCCGGCGGAGATGCAGCGTCGAT
GGGCACTTTTCCTGAGCGTGACAGCACCATTTTTAACCAAATTGGTTAAG
GGATTTACCCAGGGCACATTGTTTGACAAGGAGGCAGAGCTGGCTCGAGA
CCTGCGGATTGTCTTGGAAAAGCTCGGGCCCACGTTCGTCAAGCTCGGAC
AAGCCCTCTCGATCCGCCCGGACGTGATCGGGCCCGCTGCCACGGAGGAG
CTACAGAAGCTTCAAGACgcgGAGAGCTCGGGTGCCCGTGGCAGGTGAAT
GTATCCTCATTCCTACCAGGcttttcttccattttcctgcATCACCAGGA
CAGGCTCCCGCTGTGTAGATCGCCCGAAGGACCTGAAAAGCAGCAGCTGT
TCGGAAGTCACACGTAGTAGCCCGCCCAGTCCTATGCCCCGAATTACttg
ctccccttctctccgtGATCCGTTTTTCCTTCTGCTCGTTGTCGTCACCA
TGTTACATTGGCGTAGCCTCTTCGTCGCTGCGCATGGTGCAGTGGGTCGG
AGCGGCGCATTTTTGGTTCCAACCGCTTTTGGCGGATCATCATCCCGCTC
AAGCATGCGGGGCCGCCTCATTCCTCCGTACCGCCTCATGAGTACCACAC
TTCCCAATCCGAGTGTATCCGATCCCAAATCAGTTCCTactccaccatcc
tcctccataccTGATTACAATCACCGCGACGCCCTCACGTCTAGGGATGG
ACTGCCTCTCGTCTACGAGCCCAAAACCATCAAGAAGTACTGGGACGCAC
GCCCGGCGGAGATGCAGCGTCGATGGGCACTTTTCCTGAGCGTGACAGCA
CCATTTTTAACCAAATTGGTTAAGGGATTTACCCAGGGCACATTGTTTGA
CAAGGAGGCAGAGCTGGCTCGAGACCTGCGGATTGTCTTGGAAAAGCTCG
GGCCCACGTTCGTCAAGCTCGGACAAGCCCTCTCGATCCGCCCGGACGTG
ATCGGGCCCGCTGCCACGGAGGAGCTACAGAAGCTTCAAGACgcgGAGAG
CTCGGGTGCCCGTGGCAGGTGAATGTATCCTCATTCCTACCAGGcttttc
ttccattttcctgcATCACCAGGACAGGCTCCCGCTGTGTAGATCGCCCG
AAGGACCTGAAAAGCAGCAGCTGTTCGGAAGTCACACGTAGTAGCCCGCC
CAGTCCTATGCCCCGAATTACttgctccccttctctccgtGATCCGTTTT
TCCTTCTGCTCGTTGTCGTCACCATGTTACATTGGCGTAGCCTCTTCGTC
GCTGCGCATGGTGCAGTGGGTCGGAGCGGCGCATTTTTGGTTCCAACCGC
TTTTGGCGGATCATCATCCCGCTCAAGCATGCGGGGCCGCCTCATTCCTC
CGTACCGCCTCATGAGTACCACACTTCCCAATCCGAGTGTATCCGATCCC
AAATCAGTTCCTactccaccatcctcctccataccTGATTACAATCACCG
CGACGCCCTCACGTCTAGGGATGGACTGCCTCTCGTCTACGAGCCCAAAA
CCATCAAGAAGTACTGGGACGCACGCCCGGCGGAGATGCAGCGTCGATGG
GCACTTTTCCTGAGCGTGACAGCACCATTTTTAACCAAATTGGTTAAGGG
ATTTACCCAGGGCACATTGTTTGACAAGGAGGCAGAGCTGGCTCGAGACC
TGCGGATTGTCTTGGAAAAGCTCGGGCCCACGTTCGTCAAGCTCGGACAA
GCCCTCTCGATCCGCCCGGACGTGATCGGGCCCGCTGCCACGGAGGAGCT
ACAGAAGCTTCAAGACgcgGAGAGCTCGGGTGCCCGTGGCAGGTGA

Synonyms

Publications