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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100418g1.8894.mrna |
| Orig protein id | gnl|cribi|Naga_100418g1.8894 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:9370..12115 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5465 ID=rna5465|Name=rna5465|organism=Nannochloropsis gaditana|type=mRNA|length=2466bp
ATGAGGCTGCCATTTACTCTCCTACTTGTCTTCCTACACATTCTCCGACT
CCCGCCTCATGGGGCTGCTTTCTTCTTCTCATCATGTGGGGTTTCGCAGC
GGCATCACCCACGGCACCGGTCAATTCTAAAAGCTTGTGCCTCGACCCCT
GAAAGCCTGTCATCTACCGCCCTCAGACATCCTTACGATAACTTGCAGCA
ACAAGCATCGATATGGGGGGGCAACAGCCATCACGGCTATACGGCCGTCT
TGATCGTGCCGACGGGCATCGGCGCCTCCATTGGGGGCTACGCCGGAGAC
GCCTTGCCCGTGGCCCATGGTCTGGCCTCCGTCGTCGACACCCTCATCAC
CCACCCGAACGTCATGAACGGCGCCTCCCTCTACGCCCCTCGGCCCAACA
TTCTGTACACAGAGGGCTTCGCGTTGGACGAATTCGCGGGAGGCAGGTGG
GGTCTCCGCCCTTTCCTCCCCTACCAGGGCAGCCACAAGATCGGGGTGGT
GCTGGACGTGGGCATGGAGGAAGAGATGCGCTTACGACACCTGCAGGTGG
TGGAAGGGGCGCGGGCGACGCTGGGCATCGACGTCGGGGCGGTGGCGGTG
ACGGAGGAGCCGATGGAGGTCGGGCTCGGGCTGATGCCGGGGGGAGGGTC
CTGGGGGAAAGTAGGCAAGCCAAACACCCTGATGAAAGCCGCGCGGCGGC
TGGTGGAGGAAGAGGGCTGCACCGCTCTGGCCGTGGTGGCCCGATTCCCG
GAGGAGGAGGAGGACGAGGCGGCCTTGCAGGCTTACAGGGAGGGCCACGG
CGTCGATTGTGTAGGGGGGGCAGAAGCGGTCATCTCCCACCTGGTCACTG
CTGAGTTGGGGGTGCCCTGCGCCCACGCCCCAGGCCTCCCCCCCCTGGCG
GCCGACGCGGGGATCAGCCCGAAGGCCTGCGGAGAAGAGCTCGGGTACAC
ATTCTTGCCCTGCGTCCTTGCGAATTTGCAACGGGCGCCGGTCCTGGTCT
CTCCGCACCTGGAGGGGAGGAACCGAGGGAGGAACCGAGGGAGGGAGGGG
GACGGGCGCACCCTGTGGAGGGAGGACGTCTCGGCGGTGGTGGCGCCGGC
GTCGGCGGTGGGGGGCCCCGCGGTCCTGGGCCTGCTGGGCGGGGAAAGGG
CGTCGGGGCAGGCCACGTTGCTGGTGGCGGTGGAGGAGAACGAGACCTTG
ATGCGGGTGTGGCCGGAGGACTTGTTCCCGAGGCAGTTGGCAGCGGGGAG
GGTAGTGAGGGCCAGGAGCTACCTGGAGGCGATGGGGATCCTGGCGGCAC
ACAGGGCGGGCTTGAACTTGGCCGCTCTGACGCCGTCGGTCCCAGGGTTG
ATACCGGTCCCTCTCCTTTGCTGCGATTGGAGCAGTCGCTATCGTGTGGG
TGTTGAAAGAGAGGAGGATGATGGAATGCGAACCCGGCGGACGACGTTGC
GAAGTCCCGCAAAGCCAGGGCCCGCGCGAATTGTGCTCCCTCCGAGTGCC
TCGCCTCGCCGATCCGATCCGTACATCCATGATTGCGTCGATGATGGTGA
CGACCGTGAAGATCACCGTGACTCCACAGGACTCGCGTTCCCCCCCCTTT
CTTTGCCCCTCCCGTCCTCCTCGACCCCCCCTGCCACTCATCCCATCGAT
CTCACCCTCTCCTTTCACTGCCTTTTCGTGGCCCTTCCCCTCCCCCTACC
TTCCCCTCCTTCTAGTCCGCACGCCACCGCACGCATGGCCCTCCCGCCCC
CCTCCTACCCTCCCTCCTGCCCTCCCTCCCCCCCTCCCTCCTACCCTCCC
TCCCCCCTGATGGTGGGCATCCTCCTCTTCCCCGACCTGACCGCCCTCGA
CGCCCTCGGCCCCTTCGAGGTGTTGGCTTGGATCGAGCACCAGGCGCGCA
CGTCCTGCATGTACGTCACGAGTGTCTGCACGGGGTCCCTGGTACTGGCC
GCGGTGGGGAAACGGGAAAACAAAGGGAGAGGAGGTTTGCTTTTACAAAG
GGACGGGGTGAGGGCGACGACACATTGGATGTTTCTCGATCAACTCCGGC
AGATGGGGGTGGAGGCGGTCAAAGGTGAGCGCGTGGTCCGAACCACGACC
ACGGTGCCCTGCTGGGAGGAGGGAAAGGTGGAGGCAGGGGGGAAGACGAG
GGATGTTGTGATTTATACAGGAGGCGGCGTCACAGCGGGGATTGATTTCG
CCTTCGCAGTGGTACGAGACGTTTGGGGGGAAGACGTGGCACAAAGCATT
CAGCTACAGCTGGAATATTTCCCTGCAATTCCAAGCGGTCTGCTTACCTG
CCGTCCGGAAACCCTTGGAAAAGGCCAATCAGAGGGACAAAAAAGGGTCT
TGCAGAGTGTGGAGAGCAAAGCTCACGATTTAAAGAAGGAAAGGGTGCGG
GTTTGTGCACGCATCAAGGCGCGGTTGGACGGAGAGGGTGAAGTGCGGGG
GAATGCACGAACATGA back to topprotein sequence of rna5465 >rna5465-protein ID=rna5465-protein|Name=rna5465|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MTDMDSVWALLALTSTEQRARTPRKNAYLRVQAPVAFLIRRFVSDLRPHR
SLIIHHLNGHPSPTLPLLPPPNLLPPLRRRQPYPRRPAPALRLLPRRAGR
VRGPGPGPRQRRPPHGWDPCEGLLSLLSGDHAADPKDERPSPAPSVLRDP
ADAFRHGASRAGGRLHRGSASERPGPMDLCLCGGERDPGAHRHHVCSPFP
PFARWGGTPTPSGGGGAGGREGGREGGAEGGLDSLAHLPGPVGVYGRRRG
ALGGRIGAGGGRRGKEGGWEGGQRAASARDGRDHEPSCLRLALRPALGPD
ETLGGSGPSGWGLLGERHGRLCGKG back to topmRNA from alignment at CM002466.1:9370..12115+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5465 ID=rna5465|Name=rna5465|organism=Nannochloropsis gaditana|type=mRNA|length=2746bp|location=Sequence derived from alignment at CM002466.1:9370..12115+ (Nannochloropsis gaditana)
aaacgagtGGATGGAAAGGCTGGTGGGGTGCATGGGGAGAGagtgtggag
gaagaagaagaggaggaggatgcagcggcagagggtgggcgggaagcTCG
GGCAGAGGCGTGGGCGGAGTTGGAGCATGCCTTTAGTGTATTCCCGGATG
AAGAACGGGCTCGACAGCTGGTGGAGTTGGCGCGCatgaggcgggaagag
gcacGGAGGTTGGCTGAGGGGGATTGAGGAATGGTGGGGTGTGGAtggca
gcaaggaggatgaaagatggacaggagggcgTACAGGATCTTCGGTGGAC
TTGCGCGTAGAAGGCCGCGCtcggaggggcggagggacagCAACATGGGC
CGAAGCCAGTCTTGAAGGAAGAGCAAAGGGCAGGGGATACGGGCCGCGGG
CTCCTTGGGTACgcggggccgagggagggagatggggagggcggggagag
gagttagggagggaaggaggaaattaAGAGGCGGGGAATATCTCCGAGTG
CTGGCAAGACTCCCacgttccgatcttctcaTACATGCGCCactctacct
cccttccttttcccctccctctctccctcccttgctcctcttcctctttt
tgcctccctcgtctgctGCTGTCCTCTTATTCGGGGGCGTGATCTCTGCG
CCCATCTACCGACCTCGACGTCCATGGATTGTGCTTTATCTATTGCCCTT
TCCGTCgtaccctctccttttctatctATTGCCCTTTCCGTCgtaccctc
tccttttctatctATTGCCCTTTCCGTCgtaccctctccttttctatctA
TTGCCCTTTCCGTCgtaccctctccttttctatctATTGCCCTTTCCGTC
gtaccctctccttttctatctATTGCCCTTTCCGTCgtaccctctccttt
tctatctATTGTCCTTTCCGTCgtaccctctccttttctatctATCGCCC
TTTCTGTTGCGTCCATTATTGTCACTCCTGTCGtatcttctctctttttc
ccatttccccccccttccttgccttttgTCTCGTTTCCTCTGGCCCTGGA
GAGTCCTTAGGACGCCTCCGGAGCCCGGGAAAAGATTGGAACGATGGCCT
GAAGGCAACAGCGTCTTGACGCTTCtcgttggggagggagggccgacGCG
GTCATGAGGAGTTCGCAGCGTGCGGACGGGCTCAGGCGTCTGCAGAGTCG
GCGGCCCGTGTGGGCGAGGCtgaggggcagagggatgGGTCCCGCTTGAG
ACGCGATGTGTGCAGGCGAAAGATAGCGAATGAAAGGCCCGTTTCGCTTG
TGTGGCTGGCCCGAGGACGGGATGGGACGTTTGAATGACCTGCCGGCGGT
GGTTTTGGGGAGCCTGCGCCTGTGTGGGGATGGGTCGAATCTCCAGCCAC
CTTAGAAGACATTAAAGATGCATTAAGTGGTGATGTTCCCGGACTTTTGT
GTGCGATGTGTGCTATTGTGAAATTCGTGGAGGATAGTGTAGGCTATCTG
CGAGGCCTTTTACGGATATGGGATCTGAGACTCGCGcttcgcctgctccc
tcccactaGGGTAGGAAGCTTTCCATGACGGACATGGATTCTGTATGGGC
GCTCCTTGCACTCACCTCAACCGAACAGCGCGCACGGACTCCACGAAAAA
ACGCATATCTCCGGGTCCAAGCCCCTGTGGCATTTCTCATCCGTCGCTTT
GTCTCTGACCTCCGACCCCACAGGAGCCTCATCATCCATCACCTGAATGG
CCACCCATCccctaccctccccctcctcccgccccccaacctcctccccc
ccctccgccgtcgaCAGCCCTACCCCCGaaggcccgcgcccgccctccgt
ctccttccacgGCGAGCAGGGCGGGTCCGAGGGCCGGGACCGGGGCCACG
TCAGCGCCGCCCCCCGCATGGGTGGGATCCTTGCGAAGGGCTCTTGTCGC
TCCTGTCTGGGGATCACGCTGCTGACCCGAAAGATGAAAGACCGAGCCCA
GCCCCCAGCGTGCTACGGGATCCGGCGGACGCATTCCGTCACGGAGCTTC
CCGAGgtgcctgcccctccctccctcccttcctccctccctccctccctc
cctccttccctcccgtcttccgtccctcccttccatgtGACACCTCGCGG
CGCTCACGGCACTAAACTCGAGCCTTACCATTCACAACCCTTCactgccc
ttcttccttccctccctccctccctcccttcctcccgccctccctctcgc
agCTGGAGGACGCCTACATCGAGGAAGTGCTTCGGAACGGCCGGGCCCGA
TGGACCTATGTCTGTGTGGGGGCGAGCGAGACCCTGGAGCCCACCGTCAC
CACGTCTGcagtcccttccctcccttcgcacgCTGGGGAGGAACCCCTAC
CCCCtctggcgggggaggggcgggagggcgggagggagggcgggagggag
gggcggagggcggacTGGACTCCCTTGCCCACCTGCCGGGGCCTGTTGGT
GTTTATggacggcgacgaggagcGCTTGGAGGACGCAttggggcgggcgg
gggaaggcgagggaaggagggagggtgggaagggggtcAGCGAGCGGCCT
CCGCACGTGACGGGAGGGATCATGAGCCGtcgtgcctccgcctcgccctc
cgccccgccctcggacCCGATGAAACccttggaggaagcggcccgTCGGG
TTGGGGCCTTTTGGGCGAACGCCACGGACGACTTTGCGGCAAAGGT back to topCoding sequence (CDS) from alignment at CM002466.1:9370..12115+ >rna5465 ID=rna5465|Name=rna5465|organism=Nannochloropsis gaditana|type=CDS|length=1950bp|location=Sequence derived from alignment at CM002466.1:9370..12115+ (Nannochloropsis gaditana)
ATGACGGACATGGATTCTGTATGGGCGCTCCTTGCACTCACCTCAACCGA
ACAGCGCGCACGGACTCCACGAAAAAACGCATATCTCCGGGTCCAAGCCC
CTGTGGCATTTCTCATCCGTCGCTTTGTCTCTGACCTCCGACCCCACAGG
AGCCTCATCATCCATCACCTGAATGGCCACCCATCccctaccctccccct
cctcccgccccccaacctcctcccccccctccgccgtcgaCAGCCCTACC
CCCGaaggcccgcgcccgccctccgtctccttccacgGCGAGCAGGGCGG
GTCCGAGGGCCGGGACCGGGGCCACGTCAGCGCCGCCCCCCGCATGGGTG
GGATCCTTGCGAAGGGCTCTTGTCGCTCCTGTCTGGGGATCACGCTGCTG
ACCCGAAAGATGAAAGACCGAGCCCAGCCCCCAGCGTGCTACGGGATCCG
GCGGACGCATTCCGTCACGGAGCTTCCCGAGCTGGAGGACGCCTACATCG
AGGAAGTGCTTCGGAACGGCCGGGCCCGATGGACCTATGTCTGTGTGGGG
GCGAGCGAGACCCTGGAGCCCACCGTCACCACGTCTGcagtcccttccct
cccttcgcacgCTGGGGAGGAACCCCTACCCCCtctggcgggggaggggc
gggagggcgggagggagggcgggagggaggggcggagggcggacTGGACT
CCCTTGCCCACCTGCCGGGGCCTGTTGGTGTTTATggacggcgacgagga
gcGCTTGGAGGACGCAttggggcgggcgggggaaggcgagggaaggaggg
agggtgggaagggggtcAGCGAGCGGCCTCCGCACGTGACGGGAGGGATC
ATGAGCCGtcgtgcctccgcctcgccctccgccccgccctcggacCCGAT
GAAACccttggaggaagcggcccgTCGGGTTGGGGCCTTTTGGGCGAACG
CCACGGACGACTTTGCGGCAAAGGTATGACGGACATGGATTCTGTATGGG
CGCTCCTTGCACTCACCTCAACCGAACAGCGCGCACGGACTCCACGAAAA
AACGCATATCTCCGGGTCCAAGCCCCTGTGGCATTTCTCATCCGTCGCTT
TGTCTCTGACCTCCGACCCCACAGGAGCCTCATCATCCATCACCTGAATG
GCCACCCATCccctaccctccccctcctcccgccccccaacctcctcccc
cccctccgccgtcgaCAGCCCTACCCCCGaaggcccgcgcccgccctccg
tctccttccacgGCGAGCAGGGCGGGTCCGAGGGCCGGGACCGGGGCCAC
GTCAGCGCCGCCCCCCGCATGGGTGGGATCCTTGCGAAGGGCTCTTGTCG
CTCCTGTCTGGGGATCACGCTGCTGACCCGAAAGATGAAAGACCGAGCCC
AGCCCCCAGCGTGCTACGGGATCCGGCGGACGCATTCCGTCACGGAGCTT
CCCGAGCTGGAGGACGCCTACATCGAGGAAGTGCTTCGGAACGGCCGGGC
CCGATGGACCTATGTCTGTGTGGGGGCGAGCGAGACCCTGGAGCCCACCG
TCACCACGTCTGcagtcccttccctcccttcgcacgCTGGGGAGGAACCC
CTACCCCCtctggcgggggaggggcgggagggcgggagggagggcgggag
ggaggggcggagggcggacTGGACTCCCTTGCCCACCTGCCGGGGCCTGT
TGGTGTTTATggacggcgacgaggagcGCTTGGAGGACGCAttggggcgg
gcgggggaaggcgagggaaggagggagggtgggaagggggtcAGCGAGCG
GCCTCCGCACGTGACGGGAGGGATCATGAGCCGtcgtgcctccgcctcgc
cctccgccccgccctcggacCCGATGAAACccttggaggaagcggcccgT
CGGGTTGGGGCCTTTTGGGCGAACGCCACGGACGACTTTGCGGCAAAGGT back to top
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