EWM25221.1, cds5452 (CDS) Nannochloropsis gaditana

Overview
NameEWM25221.1
Unique Namecds5452
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:10944..11424 +
Alignment locationCM002466.1:11622..12115 +

Link to JBrowse

Properties
Property NameValue
End range.
End range12115
Protein idEWM25221.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100418g1.8894.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:10944..11424 +
CM002466.1supercontigCM002466.1:11622..12115 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25221.1 vs. NCBI_GenBank
Match: gi|585106912|gb|EWM25221.1| (hypothetical protein Naga_100418g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0 
Query:    1 MTDMDSVWALLALTSTEQRARTPRKNAYLRVQAPVAFLIRRFVSDLRPHRSLIIHHLNGHPSPTLPLLPPPNLLPPLRRRQPYPRRPAPALRLLPRRAGRVRGPGPGPRQRRPPHGWDPCEGLLSLLSGDHAADPKDERPSPAPSVLRDPADAFRHGASRAGGRLHRGSASERPGPMDLCLCGGERDPGAHRHHVCSPFPPFARWGGTPTPSGGGGAGGREGGREGGAEGGLDSLAHLPGPVGVYGRRRGALGGRIGAGGGRRGKEGGWEGGQRAASARDGRDHEPSCLRLALRPALGPDETLGGSGPSGWGLLGERHGRLCGKG 325
            MTDMDSVWALLALTSTEQRARTPRKNAYLRVQAPVAFLIRRFVSDLRPHRSLIIHHLNGHPSPTLPLLPPPNLLPPLRRRQPYPRRPAPALRLLPRRAGRVRGPGPGPRQRRPPHGWDPCEGLLSLLSGDHAADPKDERPSPAPSVLRDPADAFRHGASRAGGRLHRGSASERPGPMDLCLCGGERDPGAHRHHVCSPFPPFARWGGTPTPSGGGGAGGREGGREGGAEGGLDSLAHLPGPVGVYGRRRGALGGRIGAGGGRRGKEGGWEGGQRAASARDGRDHEPSCLRLALRPALGPDETLGGSGPSGWGLLGERHGRLCGKG
Sbjct:    1 MTDMDSVWALLALTSTEQRARTPRKNAYLRVQAPVAFLIRRFVSDLRPHRSLIIHHLNGHPSPTLPLLPPPNLLPPLRRRQPYPRRPAPALRLLPRRAGRVRGPGPGPRQRRPPHGWDPCEGLLSLLSGDHAADPKDERPSPAPSVLRDPADAFRHGASRAGGRLHRGSASERPGPMDLCLCGGERDPGAHRHHVCSPFPPFARWGGTPTPSGGGGAGGREGGREGGAEGGLDSLAHLPGPVGVYGRRRGALGGRIGAGGGRRGKEGGWEGGQRAASARDGRDHEPSCLRLALRPALGPDETLGGSGPSGWGLLGERHGRLCGKG 325
[Close]
BLAST of EWM25221.1 vs. NCBI_GenBank
Match: gi|553177950|ref|XP_005852509.1| (hypothetical protein NGA_0728100, partial [Nannochloropsis gaditana CCMP526] >gi|422296025|gb|EKU23324.1| hypothetical protein NGA_0728100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.8777 bits (198), Expect = 4.937e-16
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:  161 AGGRLHRGSASERPGPMDLCLCGGERDPGAHRHHVCSPFP 200
            AGGRLHRGSASERPGPMDL LCGGERDPGAHRHHVCSPFP
Sbjct:   25 AGGRLHRGSASERPGPMDLSLCGGERDPGAHRHHVCSPFP 64
The following BLAST results are available for this feature:
BLAST of EWM25221.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106912|gb|EWM25221.1|0.000e+0100.00hypothetical protein Naga_100418g1, partial [Nanno... [more]
gi|553177950|ref|XP_005852509.1|4.937e-1697.50hypothetical protein NGA_0728100, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5465rna5465Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications