rna546, rna546 (mRNA) Nannochloropsis gaditana

Overview
Namerna546
Unique Namerna546
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length583
Alignment locationCM002455.1:1366076..1367596 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g2.962.mrna
Orig protein idgnl|cribi|Naga_100541g2.962
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1366076..1367596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100541g2gene527Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna546rna546-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30125.1cds546Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna546 ID=rna546|Name=rna546|organism=Nannochloropsis gaditana|type=mRNA|length=583bp
GAGGAGGAGGAGGAGAAAAAGGAGGAGGAGGAGGAGGAGGGAGGGCCAAT
GCGAGAAAGGGAGGAGGGAACGGAGCCAAGCCGGGTGAAGGACGCCGGAG
GTGAGCGAGGAGGGGCCATGGCCGGGGGGGAGGGAGGGAAGAGAGAGGAG
GGGGGAAACGAGGAGAGAGGAAACGTGGTGGGACAAAAGGAGAAAGTGGG
ACCCAAAAAAGAAGGAAAATCCCCTGAGGACGAGGGGGGGGAAGGGGTGG
CGCACGTCGGGAAGGAGGAGATACTGAGGCGGACGGAGGAGGTCAAGACG
GCGGAGAATCGAGGGCCACGTGGGCCGGTGATGGGACCGGAAGGCCCGCG
CGCGTCCGTGGTTGCCGGTGGAGAAGGCGCGAAGTCGTTGGAGGGAGGAA
CCCTAGGGCCAAGGGGGCTGCCTGGAAGGGAGGCCGAGACAGAACCACGG
CCGGCGGCCATGACAAATGGAGCGGGGGAGGGAGGGGGAGGGGGAGGGCT
CCGAAGGCAAATATTGTAGCGGGGTGAATGATGATTAAGGAGGAGGGAGG
AGAATTTCGGAGGGGATCAGATGGGCAGCAGGG
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protein sequence of rna546

>rna546-protein ID=rna546-protein|Name=rna546|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MRLLQCGTQTGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSP
GLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSN
PEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRRE
VRIKEMRVVWLKEEARRWGYKDEEARGEEEGIGRPGGVKTPSGKESESDS
R
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mRNA from alignment at CM002455.1:1366076..1367596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna546 ID=rna546|Name=rna546|organism=Nannochloropsis gaditana|type=mRNA|length=1521bp|location=Sequence derived from alignment at CM002455.1:1366076..1367596- (Nannochloropsis gaditana)
GATAAAATGTTACTTACTCAGACGCGTAGAGTCTCGGATAAGATGTCTTC
CTTGTGCCTTTCACCACACAACCAGACCAGACTTTTGTACTTCGTTTGCA
TTCCAGCGAGCGACGCCAGGGCGTGTCACCACTATGGCTCCCAACGCCAT
TTGGACCAAGGGGGGCCTTCGTGACGGGGTCAGGAGGTTAAAGGAATACC
TCTTACTCACATGCGTTTATTGCAATGTGGGACACAGACAGGTTTGAGCA
GGCCGAATGACCCCGCGCATGATATTTGGGGGATGAATGTGGATGTCGAA
CCAGCAGAAGGGGAGCCCCGGATGGATACCGGCAACACAGCATTGCCTCG
CGGCAGTCCCGGACTGGGAAAGAGCACAAACGACTTGCATGATGCCGCCA
AGAACTCCGCGTTCCAACAAGCACAGGAGCTGGAGAACCTGGACAAGCTA
CAAGATGTAAGAATGCAAGCAAGTCAATTGGAGGTCGTGCAGCGCATAGT
AATTATGTAGGAACACATATCCACAGGACTTGTTTCTTTGTCCATCCTCC
GTACACCAACGCAATTTCCCCTTTCCTCCATCTCACAGCGCCTCTTGGAA
GCCGTCGGCATCGCATCCCAGACGCTTCGACAGCTGAGCAACCCCGAGGA
ATTCGAAGAGGAAGAGGTCCAGAAAGCCTACCAATCGTATCTTGAGCTCA
TGCGTGAAGTACACGAAGGACTCGCATCTCGCGCGGCTTGGGTCAAAAAT
TACGTTCCATACCGTCGAAACACAAAGGAACTAAGGCGTGAAGTCCGAAT
AAAAGAAATGCGGGTGGTCTGGCTGAAAGAGGAGGCACGACGGTGGGGCT
ACAAGGACGAGGAGGCCAGAGGGGAGGAGGAGGGGATAGGTCGTCCGGGA
GGGGTAAAGACACCCTCTGGGAAAGAATCCGAGTCGGATAGTCGGTAAGT
GTGGATACATAGCATGAAAAAGAGGTTAACACATAAACGGCAGGCGCCCC
TCCCGTCCCACGCCCGCCTTGTCGCAGGGAAGCACCGGGTCGGCCCCGCC
TCTGGGCTTTTGCGGGGGTTTTCGGTGTTGCCTCCCACGAATGCCGGAGC
GCAGCATTTTTTTCGTTCGTGGGTAAAGGCGAAGCACATCTTAGATCAGA
AATCAAAGACAAACAGCTACATTGCGGACTCTCGCTTTGTCCAAAGAGGA
AGCGGGGCCCCGCACGCCGCACAGGAAGTGTTACAGCCAGCGTACCCCTC
TTTTCCCTGTCAAAAATTACCTCTTCCCTTCCTTCCTCCTCCGACTTATG
AAACACATTCCCGCCGAGTAGTTTCCCCCCCAGCACCACTCCATCCCTGC
ACGTCTCCTGTCATTCCTCATATCAAACATGCTGCCCCCTGCCCCCCCTT
GCCAACCCGCGCCTTCGCAGTGAGGCGCAGAGCTAGCCTCGGCATTTTTC
GGATATCTCCGAGCCTCCTCCCCGATCTCGCTCACCAACGACCACATCCA
GCACCATCACCTACTCCCTGC
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Coding sequence (CDS) from alignment at CM002455.1:1366076..1367596-

>rna546 ID=rna546|Name=rna546|organism=Nannochloropsis gaditana|type=CDS|length=1212bp|location=Sequence derived from alignment at CM002455.1:1366076..1367596- (Nannochloropsis gaditana)
CGCCTCTTGGAAGCCGTCGGCATCGCATCCCAGACGCTTCGACAGCTGAG
CAACCCCGAGGAATTCGAAGAGGAAGAGGTCCAGAAAGCCTACCAATCGT
ATCTTGAGCTCATGCGTGAAGTACACGAAGGACTCGCATCTCGCGCGGCT
TGGGTCAAAAATTACGTTCCATACCGTCGAAACACAAAGGAACTAAGGCG
TGAAGTCCGAATAAAAGAAATGCGGGTGGTCTGGCTGAAAGAGGAGGCAC
GACGGTGGGGCTACAAGGACGAGGAGGCCAGAGGGGAGGAGGAGGGGATA
GGTCGTCCGGGAGGGGTAAAGACACCCTCTGGGAAAGAATCCGAGTCGGA
TAGTCGGTAAATGCGTTTATTGCAATGTGGGACACAGACAGGTTTGAGCA
GGCCGAATGACCCCGCGCATGATATTTGGGGGATGAATGTGGATGTCGAA
CCAGCAGAAGGGGAGCCCCGGATGGATACCGGCAACACAGCATTGCCTCG
CGGCAGTCCCGGACTGGGAAAGAGCACAAACGACTTGCATGATGCCGCCA
AGAACTCCGCGTTCCAACAAGCACAGGAGCTGGAGAACCTGGACAAGCTA
CAAGATCGCCTCTTGGAAGCCGTCGGCATCGCATCCCAGACGCTTCGACA
GCTGAGCAACCCCGAGGAATTCGAAGAGGAAGAGGTCCAGAAAGCCTACC
AATCGTATCTTGAGCTCATGCGTGAAGTACACGAAGGACTCGCATCTCGC
GCGGCTTGGGTCAAAAATTACGTTCCATACCGTCGAAACACAAAGGAACT
AAGGCGTGAAGTCCGAATAAAAGAAATGCGGGTGGTCTGGCTGAAAGAGG
AGGCACGACGGTGGGGCTACAAGGACGAGGAGGCCAGAGGGGAGGAGGAG
GGGATAGGTCGTCCGGGAGGGGTAAAGACACCCTCTGGGAAAGAATCCGA
GTCGGATAGTCGGTAAATGCGTTTATTGCAATGTGGGACACAGACAGGTT
TGAGCAGGCCGAATGACCCCGCGCATGATATTTGGGGGATGAATGTGGAT
GTCGAACCAGCAGAAGGGGAGCCCCGGATGGATACCGGCAACACAGCATT
GCCTCGCGGCAGTCCCGGACTGGGAAAGAGCACAAACGACTTGCATGATG
CCGCCAAGAACTCCGCGTTCCAACAAGCACAGGAGCTGGAGAACCTGGAC
AAGCTACAAGAT
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Synonyms
Publications