EWM30125.1, cds546 (CDS) Nannochloropsis gaditana

Overview
NameEWM30125.1
Unique Namecds546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1367141..1367386 -
Alignment locationCM002455.1:1366649..1367008 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30125.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g2.962.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1367141..1367386 -
CM002455.1supercontigCM002455.1:1366649..1367008 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM30125.1 vs. NCBI_GenBank
Match: gi|585112775|gb|EWM30125.1| (hypothetical protein Naga_100541g2 [Nannochloropsis gaditana])

HSP 1 Score: 411.764 bits (1057), Expect = 1.440e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 
Query:    1 MRLLQCGTQTGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEEARGEEEGIGRPGGVKTPSGKESESDSR 201
            MRLLQCGTQTGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEEARGEEEGIGRPGGVKTPSGKESESDSR
Sbjct:    1 MRLLQCGTQTGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEEARGEEEGIGRPGGVKTPSGKESESDSR 201
[Close]
BLAST of EWM30125.1 vs. NCBI_GenBank
Match: gi|553192335|ref|XP_005855553.1| (hypothetical protein NGA_0593600 [Nannochloropsis gaditana CCMP526] >gi|422293502|gb|EKU20802.1| hypothetical protein NGA_0593600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 387.497 bits (994), Expect = 6.981e-136
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0 
Query:   10 TGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEEARGEEEGIGRPGGVKTPSGKESESDSR 201
            TGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDE ARGEEEGIGRPGGVKTPSGKESESDSR
Sbjct:   16 TGLSRPNDPAHDIWGMNVDVEPAEGEPRMDTGNTALPRGSPGLGKSTNDLHDAAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEGARGEEEGIGRPGGVKTPSGKESESDSR 207
The following BLAST results are available for this feature:
BLAST of EWM30125.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112775|gb|EWM30125.1|1.440e-145100.00hypothetical protein Naga_100541g2 [Nannochloropsi... [more]
gi|553192335|ref|XP_005855553.1|6.981e-13699.48hypothetical protein NGA_0593600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna546rna546Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications