rna5452, rna5452 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5452
Unique Name	rna5452
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1253
Alignment location	CM002465.1:1032834..1035364 +

Link to JBrowse

Properties


Property Name	Value
Product	cyclin-y-like protein
Orig transcript id	gnl\|cribi\|Naga_100089g5.9639.mrna
Orig protein id	gnl\|cribi\|Naga_100089g5.9639
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:1032834..1035364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100089g5	gene5268	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5452	rna5452-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25230.1	cds5439	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:1032834..1035364+
coding sequence from alignment at CM002465.1:1032834..1035364+

mRNA sequence

>rna5452 ID=rna5452|Name=rna5452|organism=Nannochloropsis gaditana|type=mRNA|length=1253bp
CTGTCTATTGTGTCCTACTTCTCGCTGAAGGGGAGATAAAACGGATTAGT
GAGATGCTTACCCAACTGCGAGCTCGAGCGGCCCGTAATTATATATTATG
AGGGCGATAGAAAATCCATTTATACAGCTCTGCATTCACCTATTTCTTAT
TTAACCCTCAGGATAGACGGATGACTAGTCGTATGTCTATTTTATCATTC
ATGACACGGCTGATTCATCCCACCGTAAGTTCCTTCTCGTCCGCGCAATT
AATGTTACAAGTGGTTATCAATCAAAACGATCACAGGGATGGCAAACAGC
GTCCTCCTTGCCTCGGCCCTTCTCTGTGGTGCGTTCCACATCTGGGTGTT
GACAGTTTCTCAAGTGAATACTTCTACGAAGGCATGGACATGCGCGGTAA
TAGGCGGCATTCTCACATCTATATGGAACCATGCCTCCACTTCCGAGCTG
GCCAAGTGGCTTGATCGTTGCACTATAGCTGTAGGAGTATGTCTTGATGT
CTACATCCTGTCATCAGCAACACCCAATCAGATGTCAAGGGAAAGTGTAC
TTGCCCTGGGAGGGTGTTGTACTACTCTTTTGGCGGCGTTAGGCTTGTAT
TTTACAGCAAAAAGCTTCGAACACACGTGTTGGAAAAGACGAGATGCGTG
CCATGTAGGTGCGCATGTGCTAGCCACGATTTTGCATGCCTGCATGGCCA
CTTTGCTAGTAGTCCCAGTGGCGGAATAGCGCTGGATGCAGAGCCGAGCG
AACTGTGGGTTATTCGCATCTTCCGCCCTGACTTTGTACCTACGTTCATG
CCATGTGACCCCTTTAAATTGACAGAAAACCATAGGAGGCTCGAAATTAA
GAAAATTGCGCGCTGTGTATTTTTCTAGCACATTGCCTGCTGCTCCATCG
TCTGGAACTTCCCTTGAGGAGACTCCTAGATTCATGCAAGGGGGATGTAG
CGAAAAATAAAGTTAACATAGTAGCCAGGGTATAGCTCAAGAACGGTGAT
ACCGTGATGTACGAAAAAACCATGAAATGCACACACGAGAGGAATATTTG
ATGAGTATAAACCGACACGTGGGCCTCTGTAGATACGGGAGACGCGTCCA
CAAAGGTGGATATTTTGAAATGAGTGTAAATTACAGGATGAGGGAGAGAT
TTCATTACAAGCCTTTTTTCCAGGAAAAATTGAACATTTAAATTAACATT
GAGAATCAGGCTCCCTACTTTCAAGCCAAAAAAAGTATGAAAGCTCCACA
CGA

protein sequence of rna5452

>rna5452-protein ID=rna5452-protein|Name=rna5452|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MWHNATPYPRMSSAMSYVSLPSSTYSLPLAWPPCAIWLPQFSQVRLRCAR
FSVSNHPNLLHLSVLHPFPTDARPLFACLRTYTDRGVMGAAVSHPSLSAS
STHHQQLWGKEGGTRRRESGRTGKNRGSTAHGLKGVGTTSSPPVDILASP
CEVEEGRGGGVKGGGEGRDKKAREGKRVEGSRTGEAGAPGVRFVATEGLG
DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQRHVLAPPSSVSRPNV
DDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSR
RQQLLEESSSHVPRAASPSLSILSSSSSHSDDELLDDEASLSTTQEDEVR
VLSLFPLVFPPTRLLCLVLLLGVGGERSRLFSRLVG

mRNA from alignment at CM002465.1:1032834..1035364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5452 ID=rna5452|Name=rna5452|organism=Nannochloropsis gaditana|type=mRNA|length=2531bp|location=Sequence derived from alignment at CM002465.1:1032834..1035364+ (Nannochloropsis gaditana)
ATTTATTGCCACCCTCGTGTCGATTGTACACACCGTATGGAAGACGACGG
CATACGTGGTGTTGAGATTTGTTGCACAAGGCGTGGTCTTGCACGTCgag
agagggacggtggAACAAATGGCGGTGACTGCATGCCTGCACGACAACCG
CTGAGGTCGGGGTCCCGTGATATCTTTAAGCCTGCCCGCTCAGGAATTTT
CTAGTTTCCTCGTGTGAAGGACGTTGAAGAGCGATGTTGACAGCCTCGTG
ACTTCGATAACGCAATTCTGCGGATGTAGGATTTATACGAAGAGGATCTG
AGCAAGGTGCTGTCTCATGTCGACTGAAATTCACTTTTTGTCCTTTGTat
gtcctttctcccccttccgcttcGCATGCTTGCATCCAAAGACGGAAATT
CCGGTGATGGTAGCAGGTGTAGCACAGACACGTATAAGATAAAACGTCGG
AGGCAAGGCTCCAGCAGGGAAAGAGTGACGGGCAAGGTAGGTAGGCATGG
AGCAATGTGAGCCTACTTGCGATACCACGCACCACAATACGCGTGAAGGT
GTCTACTTGGTCTCGTCCAAATGTGGCACAACGCTACACCTTACCCGCGC
ATGTCTTCGGCCATGTCATATGTATCGCTTCCGTCGTCTACATACTCACT
CCCACTCGCCTGGCCCCCCTGTGCCATCTGGTTACCTCAGTTTTCTCAAG
TACGCCTCCGTTGTGCACGCTTCTCTGTCTCAAACCACCCAAATCTGCTC
CATTTGTCTGTTTTACACCCGTTTCCTACCGACGCTCGTCCTTTATTTGC
TTGCCTTCGGACATACACAGACAGAGGAGTTATGGGGGCAGCAGTCTCgc
atccctctctctctgcctcttccacccaccaccagcagctgtgggggaag
gaagggggaactcggagaagggaaagcggaaggaCCGGCAAAAACAGGGG
ATCGACGGCCCATGGTCTTAAGGGCGTGGGAACGACGTCCTCGCCGCCGG
TGGACATTCTCGCGAGTCCGtgtgaggtggaggaaggccgcgggggaggt
gtgaaaggaggtggggaaggacgggacaagaaggcaagggaggggaaaag
ggtcgAAGGGAGTCGAACaggcgaggccggggcgcCGGGGGTGCGTTTCG
TTGCCACAGAGGGCTTGGGCGATCCCCAGGCCGAGCACGAGGTGTTCACG
CCCTCCTACGCAGCATACACGCCGTCGTCGCGGAAGACACACGGAttgag
gtgaggaggagggaggggaggaggggggcgggggcgattagagggaaggc
agggagggggcggggggaggagggagctcGTCTTATCACGGCGCTGATGT
ACGTCTAGCTTTCGTAGAGGAGCTGCGTGGTGGGCTGacacctctctctc
tttttcccggTGCGTACGTGCTACCCTGCAGCTACAAGTCACCCGAGAGG
CGGCAACGGCATGTTTTGGCACCGCCCTCGAGTGTCTCGCGTCCCAACGT
TGGTGAGGaaaacgggggggggagggggtcaggggaggagggaagggggg
aacggaaggaaggagggaagaagggaaagcaggaAGTAGAGATACAAGGC
AATAGGGCGTTTGCCTAACCCAGTTGCCGTGTGCCTTCCGTTGCTCGGCT
GGATAttttcgccgcctccgccctcccaccggaCAGACGACGCACTCAGG
CGGgtctccgtcgtcctccaccagcacaTAGCCACCTGCGAAGGGCGACT
GGCACGTTTGAAGGccctgcggcggcggcaggtgggtagagagagaggga
ggaagggggaaggaagagcgggggaaaggggggaaacaTATGTGTGGCAT
AGGcgcggaggatgacgagTGCCGGGGTGATGAATTCGATAGGAATGGAA
TGGCTGGGTCTGAACTCTCTCTTCAAACGGGCAGCGCCAGCGTCGACGGC
AAGTGCGCgcagaaaggaaagatgcaCTACGGtcgcggaggcagcagcTT
CTAGAAGAGGTACGTCGCGCGAGTatctccttccgcctcgtgACTCTTGC
AGGAGAATGTCTCATCCAGAAGCAAGCCTCACTTCCTTTCATTTAtatcc
tcccctgccctcttcaGTCTTCGTCGCACGTCCCCcgcgccgcttcccct
tccctttccatcctctcctcctcctcctcccacagcgATGACGAGCTTCT
CGACGACGAAGCCTCCCTGTCCACCAcgcaggaggatgaggtacgcgtgc
tttccctctttccccttgtgttccctcccacccgcctccTTTGTCTGGTT
CTCCTGTTAGGTGTGGGAGGCGAGCGCTCACGTCTCTTTTCCCGTCTCGT
AGGATGAGGAcgtggatgaggaggtggagggagaagaggaagaggagatc
aAGATGTTTGACCGCACGAAAATGAAGCTtttccgggaggaggagtttgT
CTCGCCCCAGTACCTCTATCGTTTTGTCCGTGTCCCTATCGCCCGCCCAG
GCATCTGCTACAGGTAGggttgccctccccc

Coding sequence (CDS) from alignment at CM002465.1:1032834..1035364+

>rna5452 ID=rna5452|Name=rna5452|organism=Nannochloropsis gaditana|type=CDS|length=5805bp|location=Sequence derived from alignment at CM002465.1:1032834..1035364+ (Nannochloropsis gaditana)
ATGTGGCACAACGCTACACCTTACCCGCGCATGTCTTCGGCCATGTCATA
TGTATCGCTTCCGTCGTCTACATACTCACTCCCACTCGCCTGGCCCCCCT
GTGCCATCTGGTTACCTCAGTTTTCTCAAGTACGCCTCCGTTGTGCACGC
TTCTCTGTCTCAAACCACCCAAATCTGCTCCATTTGTCTGTTTTACACCC
GTTTCCTACCGACGCTCGTCCTTTATTTGCTTGCCTTCGGACATACACAG
ACAGAGGAGTTATGGGGGCAGCAGTCTCgcatccctctctctctgcctct
tccacccaccaccagcagctgtgggggaaggaagggggaactcggagaag
ggaaagcggaaggaCCGGCAAAAACAGGGGATCGACGGCCCATGGTCTTA
AGGGCGTGGGAACGACGTCCTCGCCGCCGGTGGACATTCTCGCGAGTCCG
tgtgaggtggaggaaggccgcgggggaggtgtgaaaggaggtggggaagg
acgggacaagaaggcaagggaggggaaaagggtcgAAGGGAGTCGAACag
gcgaggccggggcgcCGGGGGTGCGTTTCGTTGCCACAGAGGGCTTGGGC
GATCCCCAGGCCGAGCACGAGGTGTTCACGCCCTCCTACGCAGCATACAC
GCCGTCGTCGCGGAAGACACACGGAttgagCTACAAGTCACCCGAGAGGC
GGCAACGGCATGTTTTGGCACCGCCCTCGAGTGTCTCGCGTCCCAACGTT
GACGACGCACTCAGGCGGgtctccgtcgtcctccaccagcacaTAGCCAC
CTGCGAAGGGCGACTGGCACGTTTGAAGGccctgcggcggcggcagCGCC
AGCGTCGACGGCAAGTGCGCgcagaaaggaaagatgcaCTACGGtcgcgg
aggcagcagcTTCTAGAAGAGTCTTCGTCGCACGTCCCCcgcgccgcttc
cccttccctttccatcctctcctcctcctcctcccacagcgATGACGAGC
TTCTCGACGACGAAGCCTCCCTGTCCACCAcgcaggaggatgaggtacgc
gtgctttccctctttccccttgtgttccctcccacccgcctccTTTGTCT
GGTTCTCCTGTTAGGTGTGGGAGGCGAGCGCTCACGTCTCTTTTCCCGTC
TCGTAGGATGAATGTGGCACAACGCTACACCTTACCCGCGCATGTCTTCG
GCCATGTCATATGTATCGCTTCCGTCGTCTACATACTCACTCCCACTCGC
CTGGCCCCCCTGTGCCATCTGGTTACCTCAGTTTTCTCAAGTACGCCTCC
GTTGTGCACGCTTCTCTGTCTCAAACCACCCAAATCTGCTCCATTTGTCT
GTTTTACACCCGTTTCCTACCGACGCTCGTCCTTTATTTGCTTGCCTTCG
GACATACACAGACAGAGGAGTTATGGGGGCAGCAGTCTCgcatccctctc
tctctgcctcttccacccaccaccagcagctgtgggggaaggaaggggga
actcggagaagggaaagcggaaggaCCGGCAAAAACAGGGGATCGACGGC
CCATGGTCTTAAGGGCGTGGGAACGACGTCCTCGCCGCCGGTGGACATTC
TCGCGAGTCCGtgtgaggtggaggaaggccgcgggggaggtgtgaaagga
ggtggggaaggacgggacaagaaggcaagggaggggaaaagggtcgAAGG
GAGTCGAACaggcgaggccggggcgcCGGGGGTGCGTTTCGTTGCCACAG
AGGGCTTGGGCGATCCCCAGGCCGAGCACGAGGTGTTCACGCCCTCCTAC
GCAGCATACACGCCGTCGTCGCGGAAGACACACGGAttgagCTACAAGTC
ACCCGAGAGGCGGCAACGGCATGTTTTGGCACCGCCCTCGAGTGTCTCGC
GTCCCAACGTTGACGACGCACTCAGGCGGgtctccgtcgtcctccaccag
cacaTAGCCACCTGCGAAGGGCGACTGGCACGTTTGAAGGccctgcggcg
gcggcagCGCCAGCGTCGACGGCAAGTGCGCgcagaaaggaaagatgcaC
TACGGtcgcggaggcagcagcTTCTAGAAGAGTCTTCGTCGCACGTCCCC
cgcgccgcttccccttccctttccatcctctcctcctcctcctcccacag
cgATGACGAGCTTCTCGACGACGAAGCCTCCCTGTCCACCAcgcaggagg
atgaggtacgcgtgctttccctctttccccttgtgttccctcccacccgc
ctccTTTGTCTGGTTCTCCTGTTAGGTGTGGGAGGCGAGCGCTCACGTCT
CTTTTCCCGTCTCGTAGGATGAATGTGGCACAACGCTACACCTTACCCGC
GCATGTCTTCGGCCATGTCATATGTATCGCTTCCGTCGTCTACATACTCA
CTCCCACTCGCCTGGCCCCCCTGTGCCATCTGGTTACCTCAGTTTTCTCA
AGTACGCCTCCGTTGTGCACGCTTCTCTGTCTCAAACCACCCAAATCTGC
TCCATTTGTCTGTTTTACACCCGTTTCCTACCGACGCTCGTCCTTTATTT
GCTTGCCTTCGGACATACACAGACAGAGGAGTTATGGGGGCAGCAGTCTC
gcatccctctctctctgcctcttccacccaccaccagcagctgtggggga
aggaagggggaactcggagaagggaaagcggaaggaCCGGCAAAAACAGG
GGATCGACGGCCCATGGTCTTAAGGGCGTGGGAACGACGTCCTCGCCGCC
GGTGGACATTCTCGCGAGTCCGtgtgaggtggaggaaggccgcgggggag
gtgtgaaaggaggtggggaaggacgggacaagaaggcaagggaggggaaa
agggtcgAAGGGAGTCGAACaggcgaggccggggcgcCGGGGGTGCGTTT
CGTTGCCACAGAGGGCTTGGGCGATCCCCAGGCCGAGCACGAGGTGTTCA
CGCCCTCCTACGCAGCATACACGCCGTCGTCGCGGAAGACACACGGAttg
agCTACAAGTCACCCGAGAGGCGGCAACGGCATGTTTTGGCACCGCCCTC
GAGTGTCTCGCGTCCCAACGTTGACGACGCACTCAGGCGGgtctccgtcg
tcctccaccagcacaTAGCCACCTGCGAAGGGCGACTGGCACGTTTGAAG
GccctgcggcggcggcagCGCCAGCGTCGACGGCAAGTGCGCgcagaaag
gaaagatgcaCTACGGtcgcggaggcagcagcTTCTAGAAGAGTCTTCGT
CGCACGTCCCCcgcgccgcttccccttccctttccatcctctcctcctcc
tcctcccacagcgATGACGAGCTTCTCGACGACGAAGCCTCCCTGTCCAC
CAcgcaggaggatgaggtacgcgtgctttccctctttccccttgtgttcc
ctcccacccgcctccTTTGTCTGGTTCTCCTGTTAGGTGTGGGAGGCGAG
CGCTCACGTCTCTTTTCCCGTCTCGTAGGATGAATGTGGCACAACGCTAC
ACCTTACCCGCGCATGTCTTCGGCCATGTCATATGTATCGCTTCCGTCGT
CTACATACTCACTCCCACTCGCCTGGCCCCCCTGTGCCATCTGGTTACCT
CAGTTTTCTCAAGTACGCCTCCGTTGTGCACGCTTCTCTGTCTCAAACCA
CCCAAATCTGCTCCATTTGTCTGTTTTACACCCGTTTCCTACCGACGCTC
GTCCTTTATTTGCTTGCCTTCGGACATACACAGACAGAGGAGTTATGGGG
GCAGCAGTCTCgcatccctctctctctgcctcttccacccaccaccagca
gctgtgggggaaggaagggggaactcggagaagggaaagcggaaggaCCG
GCAAAAACAGGGGATCGACGGCCCATGGTCTTAAGGGCGTGGGAACGACG
TCCTCGCCGCCGGTGGACATTCTCGCGAGTCCGtgtgaggtggaggaagg
ccgcgggggaggtgtgaaaggaggtggggaaggacgggacaagaaggcaa
gggaggggaaaagggtcgAAGGGAGTCGAACaggcgaggccggggcgcCG
GGGGTGCGTTTCGTTGCCACAGAGGGCTTGGGCGATCCCCAGGCCGAGCA
CGAGGTGTTCACGCCCTCCTACGCAGCATACACGCCGTCGTCGCGGAAGA
CACACGGAttgagCTACAAGTCACCCGAGAGGCGGCAACGGCATGTTTTG
GCACCGCCCTCGAGTGTCTCGCGTCCCAACGTTGACGACGCACTCAGGCG
GgtctccgtcgtcctccaccagcacaTAGCCACCTGCGAAGGGCGACTGG
CACGTTTGAAGGccctgcggcggcggcagCGCCAGCGTCGACGGCAAGTG
CGCgcagaaaggaaagatgcaCTACGGtcgcggaggcagcagcTTCTAGA
AGAGTCTTCGTCGCACGTCCCCcgcgccgcttccccttccctttccatcc
tctcctcctcctcctcccacagcgATGACGAGCTTCTCGACGACGAAGCC
TCCCTGTCCACCAcgcaggaggatgaggtacgcgtgctttccctctttcc
ccttgtgttccctcccacccgcctccTTTGTCTGGTTCTCCTGTTAGGTG
TGGGAGGCGAGCGCTCACGTCTCTTTTCCCGTCTCGTAGGATGAATGTGG
CACAACGCTACACCTTACCCGCGCATGTCTTCGGCCATGTCATATGTATC
GCTTCCGTCGTCTACATACTCACTCCCACTCGCCTGGCCCCCCTGTGCCA
TCTGGTTACCTCAGTTTTCTCAAGTACGCCTCCGTTGTGCACGCTTCTCT
GTCTCAAACCACCCAAATCTGCTCCATTTGTCTGTTTTACACCCGTTTCC
TACCGACGCTCGTCCTTTATTTGCTTGCCTTCGGACATACACAGACAGAG
GAGTTATGGGGGCAGCAGTCTCgcatccctctctctctgcctcttccacc
caccaccagcagctgtgggggaaggaagggggaactcggagaagggaaag
cggaaggaCCGGCAAAAACAGGGGATCGACGGCCCATGGTCTTAAGGGCG
TGGGAACGACGTCCTCGCCGCCGGTGGACATTCTCGCGAGTCCGtgtgag
gtggaggaaggccgcgggggaggtgtgaaaggaggtggggaaggacggga
caagaaggcaagggaggggaaaagggtcgAAGGGAGTCGAACaggcgagg
ccggggcgcCGGGGGTGCGTTTCGTTGCCACAGAGGGCTTGGGCGATCCC
CAGGCCGAGCACGAGGTGTTCACGCCCTCCTACGCAGCATACACGCCGTC
GTCGCGGAAGACACACGGAttgagCTACAAGTCACCCGAGAGGCGGCAAC
GGCATGTTTTGGCACCGCCCTCGAGTGTCTCGCGTCCCAACGTTGACGAC
GCACTCAGGCGGgtctccgtcgtcctccaccagcacaTAGCCACCTGCGA
AGGGCGACTGGCACGTTTGAAGGccctgcggcggcggcagCGCCAGCGTC
GACGGCAAGTGCGCgcagaaaggaaagatgcaCTACGGtcgcggaggcag
cagcTTCTAGAAGAGTCTTCGTCGCACGTCCCCcgcgccgcttccccttc
cctttccatcctctcctcctcctcctcccacagcgATGACGAGCTTCTCG
ACGACGAAGCCTCCCTGTCCACCAcgcaggaggatgaggtacgcgtgctt
tccctctttccccttgtgttccctcccacccgcctccTTTGTCTGGTTCT
CCTGTTAGGTGTGGGAGGCGAGCGCTCACGTCTCTTTTCCCGTCTCGTAG
GATGA

Synonyms

Publications