EWM25230.1, cds5439 (CDS) Nannochloropsis gaditana

Overview
NameEWM25230.1
Unique Namecds5439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:1033404..1034083 +
Alignment locationCM002465.1:1034265..1034335 +
Alignment locationCM002465.1:1034520..1034614 +
Alignment locationCM002465.1:1034768..1034842 +
Alignment locationCM002465.1:1034951..1035190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25230.1
Productcyclin-y-like protein
Orig transcript idgnl|cribi|Naga_100089g5.9639.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1033404..1034083 +
CM002465.1supercontigCM002465.1:1034265..1034335 +
CM002465.1supercontigCM002465.1:1034520..1034614 +
CM002465.1supercontigCM002465.1:1034768..1034842 +
CM002465.1supercontigCM002465.1:1034951..1035190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|585106922|gb|EWM25230.1| (cyclin-y-like protein [Nannochloropsis gaditana])

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MWHNATPYPRMSSAMSYVSLPSSTYSLPLAWPPCAIWLPQFSQVRLRCARFSVSNHPNLLHLSVLHPFPTDARPLFACLRTYTDRGVMGAAVSHPSLSASSTHHQQLWGKEGGTRRRESGRTGKNRGSTAHGLKGVGTTSSPPVDILASPCEVEEGRGGGVKGGGEGRDKKAREGKRVEGSRTGEAGAPGVRFVATEGLGDPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQRHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSRRQQLLEESSSHVPRAASPSLSILSSSSSHSDDELLDDEASLSTTQEDEVRVLSLFPLVFPPTRLLCLVLLLGVGGERSRLFSRLVG 386
            MWHNATPYPRMSSAMSYVSLPSSTYSLPLAWPPCAIWLPQFSQVRLRCARFSVSNHPNLLHLSVLHPFPTDARPLFACLRTYTDRGVMGAAVSHPSLSASSTHHQQLWGKEGGTRRRESGRTGKNRGSTAHGLKGVGTTSSPPVDILASPCEVEEGRGGGVKGGGEGRDKKAREGKRVEGSRTGEAGAPGVRFVATEGLGDPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQRHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSRRQQLLEESSSHVPRAASPSLSILSSSSSHSDDELLDDEASLSTTQEDEVRVLSLFPLVFPPTRLLCLVLLLGVGGERSRLFSRLVG
Sbjct:    1 MWHNATPYPRMSSAMSYVSLPSSTYSLPLAWPPCAIWLPQFSQVRLRCARFSVSNHPNLLHLSVLHPFPTDARPLFACLRTYTDRGVMGAAVSHPSLSASSTHHQQLWGKEGGTRRRESGRTGKNRGSTAHGLKGVGTTSSPPVDILASPCEVEEGRGGGVKGGGEGRDKKAREGKRVEGSRTGEAGAPGVRFVATEGLGDPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQRHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSRRQQLLEESSSHVPRAASPSLSILSSSSSHSDDELLDDEASLSTTQEDEVRVLSLFPLVFPPTRLLCLVLLLGVGGERSRLFSRLVG 386          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|1173928411|gb|OQR82010.1| (cyclin-Y [Thraustotheca clavata])

HSP 1 Score: 77.0258 bits (188), Expect = 5.363e-12
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQ--RHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKAL 278
            D + + E+F P++   TP  R T+GL Y++PE R      LAPPSSV++PN DD+LRRVSVVL+QHI  CE R+   +A+
Sbjct:   23 DVEEDTELFQPTHTVCTPKLR-TNGLKYRAPEARVDLSETLAPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRIREKEAM 101          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|1173946401|gb|OQR94939.1| (cyclin-Y-like protein [Achlya hypogyna])

HSP 1 Score: 76.6406 bits (187), Expect = 8.063e-12
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQR--HVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRL 272
            D   E E+F P++   TP  R T+GL Y++P+ R      LAPPSSV++PN DD+LRRVSVVL+QHI  CE RL
Sbjct:   23 DVDVESELFQPTHTVCTPKLR-TNGLKYRAPDARVDVSETLAPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRL 95          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|813163933|ref|XP_012203027.1| (hypothetical protein SPRG_08401 [Saprolegnia parasitica CBS 223.65] >gi|641532291|gb|KDO26328.1| hypothetical protein SPRG_08401 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.485 bits (184), Expect = 1.452e-11
Identity = 63/168 (37.50%), Postives = 84/168 (50.00%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQ--RHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSRRQQLLEESSSHVPRAASPSLSILSSSSSH------SDDELLDDEASLS-TTQEDEVRVLSLFPLVF 359
            D   E E+F P++   TP  R T+GL Y++P  R      LAPPSSV++PN DD+LRRV+VVL+QHI  CE RL     L     Q      AE   A         E S  H  R  S   S +  +S H      S D++ D+E  +S T +   VR+ +L PL +
Sbjct:   18 DVDIEAELFQPTHTVCTPKLR-TNGLKYRAPGARMDVSETLAPPSSVAKPNYDDSLRRVAVVLYQHIRRCEKRLRETAPLLMSTIQ--SATIAETPVA---------EASQHHALRTESFDASTVHPTSGHLPGLHLSLDKVFDEEHFVSPTYKYTFVRLPTLHPLSY 173          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|669147164|ref|XP_008609144.1| (hypothetical protein SDRG_05218 [Saprolegnia diclina VS20] >gi|530739382|gb|EQC37624.1| hypothetical protein SDRG_05218 [Saprolegnia diclina VS20])

HSP 1 Score: 75.485 bits (184), Expect = 1.621e-11
Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQ--RHVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRLARLKALRRRQRQRRRQVRAERKDALRSRRQQLLEESSSHVPRAASPSLSILSSSSSHSDDELLDDEASLS-TTQEDEVRVLSLFPLVF 359
            D   E E+F P++   TP  R T+GL Y++P+ R      LAPPSSV++PN DD+LRRV+VVL+QHI  CE RL         Q     +  +   +A  + R +  + S+ H      P L +       S D++ D+E  +S T +   VR+ +L PL +
Sbjct:   23 DVDIEAELFQPTHTVCTPKLR-TNGLKYRAPDARVDVSETLAPPSSVAKPNYDDSLRRVAVVLYQHIRRCEKRLRAPLLGSTIQSATIAEAPSSVAEASHALRTESFDASTVHPTSGHLPGLHL-------SVDKVFDEEHFVSPTYKYTFVRLPTLHPLSY 176          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|698806108|ref|XP_009836083.1| (hypothetical protein H257_11005 [Aphanomyces astaci] >gi|574108920|gb|ETV74425.1| hypothetical protein H257_11005 [Aphanomyces astaci])

HSP 1 Score: 70.4774 bits (171), Expect = 8.440e-10
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQR--HVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRL 272
            D + E   F P++   TP  R T+GL Y++P+ R      LAPPSSV++PN DD+LRRVSVVL+QHI  CE R+
Sbjct:   24 DLEDETRHFQPTHTVCTPRLR-TNGLKYRAPDARVDVSETLAPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRM 96          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|673045701|ref|XP_008876811.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574467473|gb|ETV94496.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 68.9366 bits (167), Expect = 1.920e-9
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQR--HVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRL 272
            D + E   F P++   TP  R T+GL Y++P+ R      L PPSSV++PN DD+LRRVSVVL+QHI  CE RL
Sbjct:   24 DLEDEARHFQPTHTVCTPRLR-TNGLKYRAPDARVDVSETLPPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRL 96          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|673045699|ref|XP_008876810.1| (hypothetical protein H310_11811 [Aphanomyces invadans] >gi|574467472|gb|ETV94495.1| hypothetical protein H310_11811 [Aphanomyces invadans])

HSP 1 Score: 68.9366 bits (167), Expect = 3.363e-9
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 0
Query:  201 DPQAEHEVFTPSYAAYTPSSRKTHGLSYKSPERRQR--HVLAPPSSVSRPNVDDALRRVSVVLHQHIATCEGRL 272
            D + E   F P++   TP  R T+GL Y++P+ R      L PPSSV++PN DD+LRRVSVVL+QHI  CE RL
Sbjct:   24 DLEDEARHFQPTHTVCTPRLR-TNGLKYRAPDARVDVSETLPPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRL 96          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|953496396|emb|CEG41996.1| (cyclin-y-like protein [Plasmopara halstedii])

HSP 1 Score: 67.3958 bits (163), Expect = 9.193e-9
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 0
Query:  208 VFTPSYAAYTPSSRKTHGLSYKSPERRQ--RHVLAPPSSVS---RPNVDDALRRVSVVLHQHIATCEGR 271
            VF P++A +TP   +T  L Y+ P  R   R  LAPP+SVS   +PN DD LRRVSVVL+QHI  CE R
Sbjct:   40 VFQPTHAVFTPKLSETSSLRYRKPNDRVVGRTSLAPPTSVSSIAQPNCDDFLRRVSVVLYQHIRRCEKR 108          
BLAST of EWM25230.1 vs. NCBI_GenBank
Match: gi|675213533|ref|XP_008915651.1| (hypothetical protein PPTG_19097 [Phytophthora parasitica INRA-310] >gi|568084094|gb|ETM99037.1| hypothetical protein PPTG_19097 [Phytophthora parasitica INRA-310])

HSP 1 Score: 64.3142 bits (155), Expect = 1.437e-8
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 0
Query:  208 VFTPSYAAYTPSSRKTHGLSYKSPERRQ--RHVLAPPSSVS---RPNVDDALRRVSVVLHQHIATCEGR 271
            VF P++  +TP   +T  L Y+ P+ R      LAPPSSVS   +PN DD LRRVSVVL+QHI  CE R
Sbjct:   50 VFQPTHTVFTPRLSETSSLRYRKPDDRVVGSTSLAPPSSVSSIAQPNYDDFLRRVSVVLYQHIRRCEKR 118          
The following BLAST results are available for this feature:
BLAST of EWM25230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106922|gb|EWM25230.1|0.000e+0100.00cyclin-y-like protein [Nannochloropsis gaditana][more]
gi|1173928411|gb|OQR82010.1|5.363e-1250.00cyclin-Y [Thraustotheca clavata][more]
gi|1173946401|gb|OQR94939.1|8.063e-1254.05cyclin-Y-like protein [Achlya hypogyna][more]
gi|813163933|ref|XP_012203027.1|1.452e-1137.50hypothetical protein SPRG_08401 [Saprolegnia paras... [more]
gi|669147164|ref|XP_008609144.1|1.621e-1135.19hypothetical protein SDRG_05218 [Saprolegnia dicli... [more]
gi|698806108|ref|XP_009836083.1|8.440e-1051.35hypothetical protein H257_11005 [Aphanomyces astac... [more]
gi|673045701|ref|XP_008876811.1|1.920e-951.35hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673045699|ref|XP_008876810.1|3.363e-951.35hypothetical protein H310_11811 [Aphanomyces invad... [more]
gi|953496396|emb|CEG41996.1|9.193e-953.62cyclin-y-like protein [Plasmopara halstedii][more]
gi|675213533|ref|XP_008915651.1|1.437e-852.17hypothetical protein PPTG_19097 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5452rna5452Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications