rna5450, rna5450 (mRNA) Nannochloropsis gaditana

Overview
Namerna5450
Unique Namerna5450
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2396
Alignment locationCM002465.1:1029587..1030597 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100089g3.9644.mrna
Orig protein idgnl|cribi|Naga_100089g3.9644
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1029587..1030597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100089g3gene5266Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5450rna5450-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25235.1cds5437Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5450 ID=rna5450|Name=rna5450|organism=Nannochloropsis gaditana|type=mRNA|length=2396bp
ATGCGATTTCAGTACTCGAGCACGATGGCCGTGTTTCTGGTGCTCTTGCT
GGCCATGACTGTCGTTGTCATCGAAGGAGTGATTCGATGTGACACGACGG
CCAAGGAGAGGGAGATGATTGTCGAGGATGCCTTGGGAAACTTGAGGGAA
TCGCAAGACTTCCAAGTGATTCAGGGCACCCTCACCTTCAACCACCGTCA
AATCGGGAACCCCGCCGGAAGATATGGAACGGTTTCGTTTCCCACATGGT
CCCAGCCTTTGGGCCTGTGCAAATCCACCACTTTCAACCAAACGTCGCCC
ATTCCCTTCTCCTTCTGCAACATCGCCTTTACCCTGGGCCCGCGAGACGC
GATCGTCTGGCTCGGCTGCACGCCCCCCCCCGCTGCCTACTTCTCGATTC
GCTCCTATGTCGCATTCCGCTTCTCGCCCTCGGTTTGGTTTCCCGCCGCG
GAACTAGGGGATCCCGCGAACCACATGACCCTGAATAGCACAGGGGGACC
GGAAGATCCTTTCGAGAAGACGACCATGGTTTTCTCGACGGGCGACCGAG
AAACAGCGCGTCACGTCAAGCGTGCCTTTGCCAAGGCGGGCTTTCCTCGC
GGCTCCAGCAATCTTGACGTCATCCCCGCGGAGCTTGCTCGCTTTCGGGA
GCGACAAGAAACTGCCTTTTGGGTCCAGGACAAGAGCGACGCCTTTGCCT
GGCAGTTCCGGGTATCCCAATTCGAAGACCCTGAAGCCGCGGAGGCCTAC
TTCGACCAGACCTGGCCAGTGTATTTTCTGAGGGCACGTCCTGAGTACGA
AAAGCGAGGCGCAAAACCCATCCCCAGGCCCGAAGCCCGCCCGCGTGGCA
CGGGGCAAGACGAGGCCTACCTCCATCCCTCCCTCGACAAATTGGAGGAA
GAGATCATTGTCGCCTACGCGAGCAAAGGAAGCAAGCTCTCCTACCGCTT
TCCCATGGACCACATCGTCCCTGACATAGAGCGGTGCTTGACTGACCCGC
AGTACGCGCCCATTTTCAAGCCCGTCCCCGCCTGGCATTTCCCAGGCTGG
CCAAGTTGCGATTGGTTCTCAGCCGACGCCCTCTACACTGGGCTTCCCGA
CACCACGGACCTGTCCGCGCTCACTTTCCCAACGAATCGAACCTTTGTGG
TGATGGGAGTCAACCAACCGCGTCTTCAGAAATCCATTTATTCCAATTTA
ATGCTCACGGCTGTGGCACATTTTGAAGATCCGGCGCATAGCGTGAACTT
GACAGCCACAGAATTACAAGGTTCTGCGTCCATGTTTGCCCCTGAGGTAA
GCAGGAAGCGATGGGATTGATCACATCCTTGAAGTACGGGGTTGCGTTTC
AAGTCTGCATACATGCGTGGTTTCTTGAGTCGTGTTTCATGATCAAGGGA
TGAGAGGTTTTAGGGAACGAAGAAGGAGTTAGAGTACAATCGGTACGATT
TTGTGCATATTCGCGCAGGATACCCCGTGAAATGGCGGCTCTGGGGAACG
CATGCGGCGCTCTCACTGATCAGTAACACTTGGGTGATTCAATCCCTTCT
CTCATCCTCCGTGACCTCTATTTCCGCTTCTCTACTTCTGCCTTTTACTC
TGTCAGCTTGAATACTCTGACGACGTGTGGGCTTACTCCTTTTCAAGGGA
CTGTGCGTCCGGACAGCTGGGGCTAGGCGGACCTTTGTATTGTCGCACCG
TTACCCCCTCCATGATCAACGAGACTGAGTTCCTCTTCGTGGTGGAGAGG
AAGTACCTGGAACTTGCCACCAAGACCGGGCCTGCCCCAGCGGAGGTGAT
GCCGCCGTTGGTGCTGGTGTTTGATAAAATGGAGGAAGAGGAAGACTCTA
TGCTAGGGGAGGGGATGAGGGAAGAAGATTTGAGCAGGCCCGCCTTGCGG
CGGCGTATTTAAGTAGGAGGCATCGAATGAATCCGACGTACAATTTGCCT
TCGGCTTGAGAATGGTGTAGACTCGCGATAACTGGTTCTTTGTTTTGGGG
AGCGTGGTAGTGCCTGGAACGTTGCCGAATCAGGCCGATGCTCTTGTTGA
AGAAGGGGAGCTTGGCGGAACGTGGGAGAGGCCGAAAGGGGATCTCTTTT
TTGTGTAACTAGGATGCGAATGGAAAATTTTAGGGTTTTCTGTGGGAACA
GAAACGCTCAAAAGACAAAAGAACATCGGGGCGACTAGTACATTTATGCA
TCATCGTTTCCCCCCGGTATGATTCACATTTTATCTATCAGAGCCAGCCA
AATGATTTCATTTTCCCATGGTCCGATTTTTTCCCCTCGCGCTAAAGGAC
TTCTTAAGCAGACGGAAACCACTTAATTCTTGTCCGAGGCGTAAGGCGCC
TTTGTCTTTGGTACAAACATCAGGCAGAAGATAATCAGCTAGATGA
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protein sequence of rna5450

>rna5450-protein ID=rna5450-protein|Name=rna5450|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLK
WKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLRGIQM
GVMKLSEGLVDLYRSDLSHRIRAAFSTAAATAVAAATGRGNDTQEQKCTL
DAGNVQSLAAEGWEKAGEREGEGLRETREGLW
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mRNA from alignment at CM002465.1:1029587..1030597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5450 ID=rna5450|Name=rna5450|organism=Nannochloropsis gaditana|type=mRNA|length=1011bp|location=Sequence derived from alignment at CM002465.1:1029587..1030597+ (Nannochloropsis gaditana)
ATGGCAAGTGCGTCACCCCCGGCTGTGGCATCGTCCTCGCTGGCTCCCTc
tggggagaaaagagagaggatgaaggagagagagagggaggggagcgagg
cgaTGGTGGCGGATTGGATGGGCAGAGAAGGGCTCGGAAAGCGCTTAAAG
TGGAAGATTAGAAGGTAACTCAGAAAgctagggggggaggaaggagaggg
gggggagggagggaggaagcgaaggggcGGGAAATATTTTCCTAGAAAAA
CGGTTGATGACACAAGTTTTCATGGATGATGTATTTGTAAGACTTGTGGG
CGACAGGGTCGTGTCGTTGCTTATGGCAGCGCCTATTCCAGCGCGTAAAA
TTGCTCCACCCCACTTACGCCGACGTGACGGCTTTCATGCcttctgtctt
cctccttccatccccttccagcctcctcgcggcctgcctctccgccctcc
tcttcgtggcGGGCATACAAGTCGCCCAGGCCCTCTTGATGGAGGGACCT
GAAGGCCTGAAAGACGTCCCGAGAAACATCAtgcttctcctccgggtatg
cttcccacccttcctcgtccttacTCATCCATGTCGTGGCCTATCTATCA
CAACCCATTTTCTCCGTCTTGATCCTTTTTCTTCATGCTcacgctttttc
ctctcaaCGTTTAAGATGCTTAGTCTCGCGTCTTCTTGGTTGGATGCATG
ACTCTCCTGAAACACGCCCTCTGTTTCCTTTTGtcatcctttttcctcag
gGCATTCAAATGGGGGTCATGAAGCTAAGCGAGGGCCTCGTCGACCTCTA
CCGCTCGGACTTGTCACATCGGATTCGAGCAGCCTTCTCTACTGCTGCGG
CTACGGCTGTCGCTGCCgccacggggagggggaacgacACACAGGAACAG
AAATGCACGCTGGATGCAGGCAATGTCCAGAGTCTTGCCGCAGAAGGGTG
GGAGAAAGCCggcgagagagaaggggaaggattgCGGGAGACGAGAGAAG
GTCTCTGGTGA
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Coding sequence (CDS) from alignment at CM002465.1:1029587..1030597+

>rna5450 ID=rna5450|Name=rna5450|organism=Nannochloropsis gaditana|type=CDS|length=1647bp|location=Sequence derived from alignment at CM002465.1:1029587..1030597+ (Nannochloropsis gaditana)
ATGGCAAGTGCGTCACCCCCGGCTGTGGCATCGTCCTCGCTGGCTCCCTc
tggggagaaaagagagaggatgaaggagagagagagggaggggagcgagg
cgaTGGTGGCGGATTGGATGGGCAGAGAAGGGCTCGGAAAGCGCTTAAAG
TGGAAGATTAGAAGcctcctcgcggcctgcctctccgccctcctcttcgt
ggcGGGCATACAAGTCGCCCAGGCCCTCTTGATGGAGGGACCTGAAGGCC
TGAAAGACGTCCCGAGAAACATCAtgcttctcctccgggGCATTCAAATG
GGGGTCATGAAGCTAAGCGAGGGCCTCGTCGACCTCTACCGCTCGGACTT
GTCACATCGGATTCGAGCAGCCTTCTCTACTGCTGCGGCTACGGCTGTCG
CTGCCgccacggggagggggaacgacACACAGGAACAGAAATGCACGCTG
GATGCAGGCAATGTCCAGAGTCTTGCCGCAGAAGGGTGGGAGAAAGCCgg
cgagagagaaggggaaggattgCGGGAGACGAGAGAAGGTCTCTGGTGAA
TGGCAAGTGCGTCACCCCCGGCTGTGGCATCGTCCTCGCTGGCTCCCTct
ggggagaaaagagagaggatgaaggagagagagagggaggggagcgaggc
gaTGGTGGCGGATTGGATGGGCAGAGAAGGGCTCGGAAAGCGCTTAAAGT
GGAAGATTAGAAGcctcctcgcggcctgcctctccgccctcctcttcgtg
gcGGGCATACAAGTCGCCCAGGCCCTCTTGATGGAGGGACCTGAAGGCCT
GAAAGACGTCCCGAGAAACATCAtgcttctcctccgggGCATTCAAATGG
GGGTCATGAAGCTAAGCGAGGGCCTCGTCGACCTCTACCGCTCGGACTTG
TCACATCGGATTCGAGCAGCCTTCTCTACTGCTGCGGCTACGGCTGTCGC
TGCCgccacggggagggggaacgacACACAGGAACAGAAATGCACGCTGG
ATGCAGGCAATGTCCAGAGTCTTGCCGCAGAAGGGTGGGAGAAAGCCggc
gagagagaaggggaaggattgCGGGAGACGAGAGAAGGTCTCTGGTGAAT
GGCAAGTGCGTCACCCCCGGCTGTGGCATCGTCCTCGCTGGCTCCCTctg
gggagaaaagagagaggatgaaggagagagagagggaggggagcgaggcg
aTGGTGGCGGATTGGATGGGCAGAGAAGGGCTCGGAAAGCGCTTAAAGTG
GAAGATTAGAAGcctcctcgcggcctgcctctccgccctcctcttcgtgg
cGGGCATACAAGTCGCCCAGGCCCTCTTGATGGAGGGACCTGAAGGCCTG
AAAGACGTCCCGAGAAACATCAtgcttctcctccgggGCATTCAAATGGG
GGTCATGAAGCTAAGCGAGGGCCTCGTCGACCTCTACCGCTCGGACTTGT
CACATCGGATTCGAGCAGCCTTCTCTACTGCTGCGGCTACGGCTGTCGCT
GCCgccacggggagggggaacgacACACAGGAACAGAAATGCACGCTGGA
TGCAGGCAATGTCCAGAGTCTTGCCGCAGAAGGGTGGGAGAAAGCCggcg
agagagaaggggaaggattgCGGGAGACGAGAGAAGGTCTCTGGTGA
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Synonyms
Publications