EWM25235.1, cds5437 (CDS) Nannochloropsis gaditana

Overview
NameEWM25235.1
Unique Namecds5437
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:1029587..1029750 +
Alignment locationCM002465.1:1030008..1030131 +
Alignment locationCM002465.1:1030337..1030597 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25235.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100089g3.9644.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1029587..1029750 +
CM002465.1supercontigCM002465.1:1030008..1030131 +
CM002465.1supercontigCM002465.1:1030337..1030597 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM25235.1 vs. NCBI_GenBank
Match: gi|585106927|gb|EWM25235.1| (hypothetical protein Naga_100089g3 [Nannochloropsis gaditana])

HSP 1 Score: 360.533 bits (924), Expect = 7.119e-126
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLKWKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLRGIQMGVMKLSEGLVDLYRSDLSHRIRAAFSTAAATAVAAATGRGNDTQEQKCTLDAGNVQSLAAEGWEKAGEREGEGLRETREGLW 182
            MASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLKWKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLRGIQMGVMKLSEGLVDLYRSDLSHRIRAAFSTAAATAVAAATGRGNDTQEQKCTLDAGNVQSLAAEGWEKAGEREGEGLRETREGLW
Sbjct:    1 MASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLKWKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLRGIQMGVMKLSEGLVDLYRSDLSHRIRAAFSTAAATAVAAATGRGNDTQEQKCTLDAGNVQSLAAEGWEKAGEREGEGLRETREGLW 182
The following BLAST results are available for this feature:
BLAST of EWM25235.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106927|gb|EWM25235.1|7.119e-126100.00hypothetical protein Naga_100089g3 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5450rna5450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications