rna5440, rna5440 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5440
Unique Name	rna5440
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	240
Alignment location	CM002465.1:1000931..1003133 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100571g2.1987.mrna
Orig protein id	gnl\|cribi\|Naga_100571g2.1987
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:1000931..1003133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100571g2	gene5260	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5440	rna5440-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25246.1	cds5427	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:1000931..1003133+
coding sequence from alignment at CM002465.1:1000931..1003133+

mRNA sequence

>rna5440 ID=rna5440|Name=rna5440|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGATCCTGGCAAGACAGAAAGCGTTACAGGAGGAAGAGGAGCGGCTTCA
ACAGCAACGAGAAGAAGAGGAAAAGAAGATCGCCGCGGAGAGGGCAGCGG
AGGAGGCGGAGTTGGCGGCCAAGGAGGAAGAGAAACGTTTGAAAAAGGAG
AAAGCACGCGCCAAGATGGAAAAGCAGAAGGCAGAGGGTACCTACATGAC
CAAAGCCCAACGTGAAAAGGCCATGCGGCGGCAGGAATGA

protein sequence of rna5440

>rna5440-protein ID=rna5440-protein|Name=rna5440|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRG
VETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPV
PYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTI
EGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGS
PKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV

mRNA from alignment at CM002465.1:1000931..1003133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5440 ID=rna5440|Name=rna5440|organism=Nannochloropsis gaditana|type=mRNA|length=2203bp|location=Sequence derived from alignment at CM002465.1:1000931..1003133+ (Nannochloropsis gaditana)
TGACCGTGTTTTTGGTTCGTATCCGATGAACCGACTGCTCCGTATGAACC
CCAGGCCTTGGCTTTGGTCGTTCTTGTGAATCGTTGTAGATGACATATAT
ATCATTGTTTCCAAGTCGTCGGTGAGCAGTCTTGGATACTTTGTTGAGTC
Ctttctttgattttttttggcttgcttgctttctccttcttcttcccgtc
gaaattgctgctgcttcaaCGTCAACCTTtccattctcttcctctccctt
gtctgCAGGACCCATGCGGATGCAGTCTTCTCTTACCCGCCTTTATGACC
TATTGCTCGTGGCGACTGTACTCTCTGTATCCAATGCCTTCGTTGTCCCC
ATGCCTGCAATTGCATCGAAACCCCCTGCTTCTTCAAGCACTTTGTTTGG
GGGGTTGAGGGGCGTTGAAACATTTGACGGGGCTTTCACGCTGTCTCCCG
AGTCGGAAGGTGTCCTCGTTGGATACATGGAATGCGAGGTAAGCAGACAT
GCATTAGTGCCATAAAAGGGGTATTTCTGCgcagagagaaagagagcccA
GGCCGGGCTGTGAACcgtaagaaggaggaagagaaatggaggacgcGATA
CTACTTCCTCGGGGAGAGATTTGTGTTGCCTAATTGCTCAGTGTTCTTGT
CGTTTCACAACATGATACGAATATTTTAAAATGACTTTCctcattcctct
tcttttctcaaTTTTGTCTGCCTCGGACGAGTAGGACATGAAGAAGGAAG
TCTGCAAGCAAGCCAAATGCACAAGCGCGCGTTTTACAGGGCAACTTTTC
CAGCCCGTGCCTTACTCTCCTGGAACACCATTGGGTATGGCCAAGGAAGA
CATAAGATCACCTCTGAATCCCGATCGCTGTCGGCATGGACTAGTGGACT
GACTGCTAAGAAATTGCCCTTGACTCTTCTTCGTttcgtcccccctcctc
cccatcccactccatcctccctcaggcATGCCCCGAGAATTCGAGGATTT
CCACCTGAACCCCTCCTACGCGATATGCAATGTGCCCCCAACGGTCATGT
TTAAGGCCAAGATCTTCAAACCTCCCCGCCTGTGTGCCGTTTTTACCATC
GAAGGTGCGTGCGTGCAAACTTGCAGAAATCCGACCTCCTTTTATAAGTT
GCTATTGATGGTGAAGACCTTGCGTGCGAAAATAAGCACGACGAAAATTG
CCAGATCTAAAGAGGAGCTTGCTGCCCTGAGGTCATGCTAAATATCTCGC
TGAAGATCTTATCGTTTCACCCTCTTTAtcctccgttcctcttcttgccc
cttTCATCTGTGTGTGCTTTTCCCAACTGTTGTGCTACCAGGCCTAGatc
cggacgaggagaagaaaattcTGGAAAAGGCTCGTGCCCGCATGGACCTC
CAAGCTCAAGCTGCGGCGCACCAgcccatggaggagaaagacgacgGAAG
CGAAGAGAAACGACCAGTCACAGTGCTGAAGGGGTcaccgaaggaggaaa
attgGAACGGGGTGGGCAAAGCACTTCATGAGGTGGCgttgggagagaag
gcgggggaggaggaggatgaggcagCCTTGGATGCGATGGTTGTGTAGGT
CGAGGGTGCGAACTGGTGAGAAATTGGAAATGTTTGTCGCTCACAGGCTA
ATAAATTTGATCCACTGGCTTCTGAAATTAAAAAATGGGTGGCAGTCAGG
AACtgcaggtgggagggaaatagGGGAGGGCAATTGTTGCGAGGGGCACG
AGATTGTGCAGTTGGAATAAAACAACTAAAACATGATTTCTAATACTTAT
CACAGAACAAAGAAGCACAATTGTTTTCTTATCTTATTCACAAAGAAGCA
CAAGTGTTCTCTTATGTTATTCATGTGCAGTGTTTTGAAAGAAAGAGCGA
CCCTACATCATCTCACCGAGACGAAATTAGTCATTGACCTCCGTTGGAAA
CGCTTCGGATACTTAAGCAGCGGTGTAGCCCAGACTATCGCGGGCTTGGA
TATGAAGGGAAATGCTGATTGCGACTCTCCTCTTTGGATCGAGAAAGGTA
AGGATGTGCACTGACTAGATATCAAGCTGTACACAGTATAAGATGCAAGA
CATTTGTGAGACAGAGATGACGATGAGGAGTGATACCCCAGGGTATCTTG
CCTCTTTCCGATCTTCGCACACTCACACGGAGAAAGAAACTATAACCAGC
TGC

Coding sequence (CDS) from alignment at CM002465.1:1000931..1003133+

>rna5440 ID=rna5440|Name=rna5440|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at CM002465.1:1000931..1003133+ (Nannochloropsis gaditana)
ATGCGGATGCAGTCTTCTCTTACCCGCCTTTATGACCTATTGCTCGTGGC
GACTGTACTCTCTGTATCCAATGCCTTCGTTGTCCCCATGCCTGCAATTG
CATCGAAACCCCCTGCTTCTTCAAGCACTTTGTTTGGGGGGTTGAGGGGC
GTTGAAACATTTGACGGGGCTTTCACGCTGTCTCCCGAGTCGGAAGGTGT
CCTCGTTGGATACATGGAATGCGAGGACATGAAGAAGGAAGTCTGCAAGC
AAGCCAAATGCACAAGCGCGCGTTTTACAGGGCAACTTTTCCAGCCCGTG
CCTTACTCTCCTGGAACACCATTGGgcATGCCCCGAGAATTCGAGGATTT
CCACCTGAACCCCTCCTACGCGATATGCAATGTGCCCCCAACGGTCATGT
TTAAGGCCAAGATCTTCAAACCTCCCCGCCTGTGTGCCGTTTTTACCATC
GAAGGCCTAGatccggacgaggagaagaaaattcTGGAAAAGGCTCGTGC
CCGCATGGACCTCCAAGCTCAAGCTGCGGCGCACCAgcccatggaggaga
aagacgacgGAAGCGAAGAGAAACGACCAGTCACAGTGCTGAAGGGGTca
ccgaaggaggaaaattgGAACGGGGTGGGCAAAGCACTTCATGAGGTGGC
gttgggagagaaggcgggggaggaggaggatgaggcagCCTTGGATGCGA
TGGTTGTGTAGATGCGGATGCAGTCTTCTCTTACCCGCCTTTATGACCTA
TTGCTCGTGGCGACTGTACTCTCTGTATCCAATGCCTTCGTTGTCCCCAT
GCCTGCAATTGCATCGAAACCCCCTGCTTCTTCAAGCACTTTGTTTGGGG
GGTTGAGGGGCGTTGAAACATTTGACGGGGCTTTCACGCTGTCTCCCGAG
TCGGAAGGTGTCCTCGTTGGATACATGGAATGCGAGGACATGAAGAAGGA
AGTCTGCAAGCAAGCCAAATGCACAAGCGCGCGTTTTACAGGGCAACTTT
TCCAGCCCGTGCCTTACTCTCCTGGAACACCATTGGgcATGCCCCGAGAA
TTCGAGGATTTCCACCTGAACCCCTCCTACGCGATATGCAATGTGCCCCC
AACGGTCATGTTTAAGGCCAAGATCTTCAAACCTCCCCGCCTGTGTGCCG
TTTTTACCATCGAAGGCCTAGatccggacgaggagaagaaaattcTGGAA
AAGGCTCGTGCCCGCATGGACCTCCAAGCTCAAGCTGCGGCGCACCAgcc
catggaggagaaagacgacgGAAGCGAAGAGAAACGACCAGTCACAGTGC
TGAAGGGGTcaccgaaggaggaaaattgGAACGGGGTGGGCAAAGCACTT
CATGAGGTGGCgttgggagagaaggcgggggaggaggaggatgaggcagC
CTTGGATGCGATGGTTGTGTAGATGCGGATGCAGTCTTCTCTTACCCGCC
TTTATGACCTATTGCTCGTGGCGACTGTACTCTCTGTATCCAATGCCTTC
GTTGTCCCCATGCCTGCAATTGCATCGAAACCCCCTGCTTCTTCAAGCAC
TTTGTTTGGGGGGTTGAGGGGCGTTGAAACATTTGACGGGGCTTTCACGC
TGTCTCCCGAGTCGGAAGGTGTCCTCGTTGGATACATGGAATGCGAGGAC
ATGAAGAAGGAAGTCTGCAAGCAAGCCAAATGCACAAGCGCGCGTTTTAC
AGGGCAACTTTTCCAGCCCGTGCCTTACTCTCCTGGAACACCATTGGgcA
TGCCCCGAGAATTCGAGGATTTCCACCTGAACCCCTCCTACGCGATATGC
AATGTGCCCCCAACGGTCATGTTTAAGGCCAAGATCTTCAAACCTCCCCG
CCTGTGTGCCGTTTTTACCATCGAAGGCCTAGatccggacgaggagaaga
aaattcTGGAAAAGGCTCGTGCCCGCATGGACCTCCAAGCTCAAGCTGCG
GCGCACCAgcccatggaggagaaagacgacgGAAGCGAAGAGAAACGACC
AGTCACAGTGCTGAAGGGGTcaccgaaggaggaaaattgGAACGGGGTGG
GCAAAGCACTTCATGAGGTGGCgttgggagagaaggcgggggaggaggag
gatgaggcagCCTTGGATGCGATGGTTGTGTAGATGCGGATGCAGTCTTC
TCTTACCCGCCTTTATGACCTATTGCTCGTGGCGACTGTACTCTCTGTAT
CCAATGCCTTCGTTGTCCCCATGCCTGCAATTGCATCGAAACCCCCTGCT
TCTTCAAGCACTTTGTTTGGGGGGTTGAGGGGCGTTGAAACATTTGACGG
GGCTTTCACGCTGTCTCCCGAGTCGGAAGGTGTCCTCGTTGGATACATGG
AATGCGAGGACATGAAGAAGGAAGTCTGCAAGCAAGCCAAATGCACAAGC
GCGCGTTTTACAGGGCAACTTTTCCAGCCCGTGCCTTACTCTCCTGGAAC
ACCATTGGgcATGCCCCGAGAATTCGAGGATTTCCACCTGAACCCCTCCT
ACGCGATATGCAATGTGCCCCCAACGGTCATGTTTAAGGCCAAGATCTTC
AAACCTCCCCGCCTGTGTGCCGTTTTTACCATCGAAGGCCTAGatccgga
cgaggagaagaaaattcTGGAAAAGGCTCGTGCCCGCATGGACCTCCAAG
CTCAAGCTGCGGCGCACCAgcccatggaggagaaagacgacgGAAGCGAA
GAGAAACGACCAGTCACAGTGCTGAAGGGGTcaccgaaggaggaaaattg
GAACGGGGTGGGCAAAGCACTTCATGAGGTGGCgttgggagagaaggcgg
gggaggaggaggatgaggcagCCTTGGATGCGATGGTTGTGTAG

Synonyms

Publications