EWM25246.1, cds5427 (CDS) Nannochloropsis gaditana

Overview
NameEWM25246.1
Unique Namecds5427
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:1001194..1001418 +
Alignment locationCM002465.1:1001665..1001764 +
Alignment locationCM002465.1:1001906..1002034 +
Alignment locationCM002465.1:1002272..1002528 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25246.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100571g2.1987.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1001194..1001418 +
CM002465.1supercontigCM002465.1:1001665..1001764 +
CM002465.1supercontigCM002465.1:1001906..1002034 +
CM002465.1supercontigCM002465.1:1002272..1002528 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|553183042|ref|XP_005853831.1| (hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >gi|422295228|gb|EKU22527.1| hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >gi|585106940|gb|EWM25246.1| hypothetical protein Naga_100571g2 [Nannochloropsis gaditana])

HSP 1 Score: 484.567 bits (1246), Expect = 3.262e-173
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
            MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV
Sbjct:    1 MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|298709848|emb|CBJ26188.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.88 bits (333), Expect = 1.161e-34
Identity = 73/180 (40.56%), Postives = 100/180 (55.56%), Query Frame = 0
Query:    7 LTRLYDLLLVATVLSVSNAFVVPM--PAIASKPPAS----SSTLFGG---------------LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEK 164
            + R    +L AT +  S    VPM    ++S P A+    S+T   G               +R VE+F+  F L  ++   L GY+  +DM  EVCKQ  C SA + G++FQPVPYS  TP GMP++ E+ F LN  Y I N+PP VMF AKIFKP RLCAV+ ++GL  D +  + E+
Sbjct:    1 MARSAAYVLAATAIVSSTTAFVPMGGARLSSAPQATAERRSATCRRGRQTDAAAAVAPLSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNER 180          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1049323178|gb|OCR01294.1| (hypothetical protein BCD67_12300 [Oscillatoriales cyanobacterium USR001])

HSP 1 Score: 119.783 bits (299), Expect = 3.945e-31
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 0
Query:   47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTI 150
            GLR +++FDG FTL P+++  L   +  E   KEV  Q +C  A FT  LFQPVPYS  TP GMP EFE +H +  +AI NVPP  MFKAKIF+P RLCAV+ I
Sbjct:    2 GLRIIDSFDGNFTLEPDAKAALFSLLTGEKFLKEVAVQLQCDRAEFTELLFQPVPYSTETPKGMPAEFEKYHESKDHAIINVPPNFMFKAKIFQPSRLCAVYRI 105          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|504973223|ref|WP_015160325.1| (hypothetical protein [Chamaesiphon minutus] >gi|428018090|gb|AFY94184.1| hypothetical protein Cha6605_3170 [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 118.627 bits (296), Expect = 1.089e-30
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
            ++ +E FDG+FTL  ++  +L G +  E   ++V +QA C S  FT  LFQPVPYS GTP GMP E E +H +P Y I NVPP  MF AKIF+P RLCA++
Sbjct:    3 IKVIENFDGSFTLDQQARSILFGLLTSEKFLQQVAEQANCQSLTFTEILFQPVPYSAGTPKGMPAEIERYHQSPEYLIINVPPNFMFAAKIFQPSRLCAIY 103          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|493030572|ref|WP_006099972.1| (hypothetical protein [Coleofasciculus chthonoplastes] >gi|196182028|gb|EDX77015.1| hypothetical protein MC7420_2018 [Coleofasciculus chthonoplastes PCC 7420])

HSP 1 Score: 117.472 bits (293), Expect = 2.908e-30
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
            L+ V  FDG+F L P+++  L   +  E  +++V  Q  C    FT  LFQPVPYS GTP GMPREFE +H +  YAI NVPP  MFKAKIF P RLCA++
Sbjct:    4 LKIVNNFDGSFVLEPDAQTHLFSLLNGESFRQQVAGQLHCQDLEFTELLFQPVPYSEGTPKGMPREFEQYHESDDYAIINVPPNFMFKAKIFNPSRLCAIY 104          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|505027565|ref|WP_015214667.1| (hypothetical protein [Anabaena cylindrica] >gi|428679266|gb|AFZ58032.1| hypothetical protein Anacy_2590 [Anabaena cylindrica PCC 7122] >gi|1210085860|dbj|BAY05002.1| hypothetical protein NIES19_42710 [Anabaena cylindrica PCC 7122])

HSP 1 Score: 117.472 bits (293), Expect = 3.214e-30
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
             L+ V+ FD +FTL+PE++  L   +  E    ++C+  +C    FT  LFQPVPYSP TP GMP EFE +H +  Y I NVPP  MF AKIF+P RLCA++
Sbjct:    2 SLKIVQNFDSSFTLAPEAQETLFKLLTSESFLSQICQNWQCEKIEFTEMLFQPVPYSPATPKGMPAEFEQYHKSEDYTIINVPPNFMFNAKIFRPSRLCAIY 103          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1210167742|dbj|BAY86823.1| (hypothetical protein NIES267_63340 [Calothrix parasitica NIES-267])

HSP 1 Score: 116.316 bits (290), Expect = 7.399e-30
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 0
Query:   47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
             L+ ++ FD +F L P+++  L   +  E   K+V +Q+KC    FT  LFQPVPYS  TP GMP EFE +H +  YAI NVPP  MFKAKIFKP RLCA++
Sbjct:    2 ALKIIQNFDSSFALEPQAKATLFELLINESFLKQVSQQSKCEQVEFTELLFQPVPYSSTTPKGMPAEFEKYHESQDYAIVNVPPNFMFKAKIFKPSRLCAIY 103          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|654348926|ref|WP_027842279.1| (hypothetical protein [Mastigocoleus testarum] >gi|959132603|gb|KST67756.1| hypothetical protein BC008_44225 [Mastigocoleus testarum BC008])

HSP 1 Score: 115.161 bits (287), Expect = 2.402e-29
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
             L+ +++FDG+F L  +++ +L   +  E+   ++C+  KC   +FT  LFQPVPYS  TP GMP+EFE +H +  Y I NVPP  MF AKIFKP RLCA++
Sbjct:    2 ALKIIQSFDGSFVLDAKAKEILFNLLNSENFIGQICQTLKCKDIKFTELLFQPVPYSINTPKGMPKEFEKYHKSDDYLIVNVPPNFMFNAKIFKPSRLCAIY 103          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|746973108|gb|KIF29770.1| (hypothetical protein PI95_54270 [Hassallia byssoidea VB512170])

HSP 1 Score: 115.161 bits (287), Expect = 2.734e-29
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
             + ++ FD +FTL PE +  L   +  E   K+VC+Q  C    FT  LFQPVPYS  TP GMP EFE +H N  YAI NVPP  MF AKIFKP RLCA++
Sbjct:    3 FKIIQNFDSSFTLEPELQKSLFSLLTSEAFLKQVCQQLNCEKVEFTELLFQPVPYSLTTPKGMPGEFEKYHDNSEYAIINVPPNFMFNAKIFKPSRLCAIY 103          
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1120204215|ref|WP_073071864.1| (hypothetical protein [Phormidesmis priestleyi])

HSP 1 Score: 115.161 bits (287), Expect = 2.751e-29
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0
Query:   47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
            G++ +E FD +F+L PE +  L   ++ E   ++V +  KC    FT  LFQPVPY+  TP GMP EFE FH +  YAI NVPP  MFKAK+FKP RLCA++
Sbjct:    2 GIKIIENFDSSFSLDPEVKTALFELLKSEAFLQQVAQALKCDQVEFTELLFQPVPYTTATPKGMPAEFEKFHNSADYAIVNVPPNFMFKAKVFKPSRLCAIY 103          
The following BLAST results are available for this feature:
BLAST of EWM25246.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183042|ref|XP_005853831.1|3.262e-173100.00hypothetical protein NGA_0429201 [Nannochloropsis ... [more]
gi|298709848|emb|CBJ26188.1|1.161e-3440.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|1049323178|gb|OCR01294.1|3.945e-3154.81hypothetical protein BCD67_12300 [Oscillatoriales ... [more]
gi|504973223|ref|WP_015160325.1|1.089e-3051.49hypothetical protein [Chamaesiphon minutus] >gi|42... [more]
gi|493030572|ref|WP_006099972.1|2.908e-3052.48hypothetical protein [Coleofasciculus chthonoplast... [more]
gi|505027565|ref|WP_015214667.1|3.214e-3049.02hypothetical protein [Anabaena cylindrica] >gi|428... [more]
gi|1210167742|dbj|BAY86823.1|7.399e-3050.98hypothetical protein NIES267_63340 [Calothrix para... [more]
gi|654348926|ref|WP_027842279.1|2.402e-2947.06hypothetical protein [Mastigocoleus testarum] >gi|... [more]
gi|746973108|gb|KIF29770.1|2.734e-2952.48hypothetical protein PI95_54270 [Hassallia byssoid... [more]
gi|1120204215|ref|WP_073071864.1|2.751e-2950.00hypothetical protein [Phormidesmis priestleyi][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5440rna5440Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications