EWM25246.1, cds5427 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|553183042|ref|XP_005853831.1| (hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >gi|422295228|gb|EKU22527.1| hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >gi|585106940|gb|EWM25246.1| hypothetical protein Naga_100571g2 [Nannochloropsis gaditana]) HSP 1 Score: 484.567 bits (1246), Expect = 3.262e-173 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV
Sbjct: 1 MRMQSSLTRLYDLLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|298709848|emb|CBJ26188.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 132.88 bits (333), Expect = 1.161e-34 Identity = 73/180 (40.56%), Postives = 100/180 (55.56%), Query Frame = 0
Query: 7 LTRLYDLLLVATVLSVSNAFVVPM--PAIASKPPAS----SSTLFGG---------------LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEK 164
+ R +L AT + S VPM ++S P A+ S+T G +R VE+F+ F L ++ L GY+ +DM EVCKQ C SA + G++FQPVPYS TP GMP++ E+ F LN Y I N+PP VMF AKIFKP RLCAV+ ++GL D + + E+
Sbjct: 1 MARSAAYVLAATAIVSSTTAFVPMGGARLSSAPQATAERRSATCRRGRQTDAAAAVAPLSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNER 180
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1049323178|gb|OCR01294.1| (hypothetical protein BCD67_12300 [Oscillatoriales cyanobacterium USR001]) HSP 1 Score: 119.783 bits (299), Expect = 3.945e-31 Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 0
Query: 47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTI 150
GLR +++FDG FTL P+++ L + E KEV Q +C A FT LFQPVPYS TP GMP EFE +H + +AI NVPP MFKAKIF+P RLCAV+ I
Sbjct: 2 GLRIIDSFDGNFTLEPDAKAALFSLLTGEKFLKEVAVQLQCDRAEFTELLFQPVPYSTETPKGMPAEFEKYHESKDHAIINVPPNFMFKAKIFQPSRLCAVYRI 105
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|504973223|ref|WP_015160325.1| (hypothetical protein [Chamaesiphon minutus] >gi|428018090|gb|AFY94184.1| hypothetical protein Cha6605_3170 [Chamaesiphon minutus PCC 6605]) HSP 1 Score: 118.627 bits (296), Expect = 1.089e-30 Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 0
Query: 48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
++ +E FDG+FTL ++ +L G + E ++V +QA C S FT LFQPVPYS GTP GMP E E +H +P Y I NVPP MF AKIF+P RLCA++
Sbjct: 3 IKVIENFDGSFTLDQQARSILFGLLTSEKFLQQVAEQANCQSLTFTEILFQPVPYSAGTPKGMPAEIERYHQSPEYLIINVPPNFMFAAKIFQPSRLCAIY 103
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|493030572|ref|WP_006099972.1| (hypothetical protein [Coleofasciculus chthonoplastes] >gi|196182028|gb|EDX77015.1| hypothetical protein MC7420_2018 [Coleofasciculus chthonoplastes PCC 7420]) HSP 1 Score: 117.472 bits (293), Expect = 2.908e-30 Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
L+ V FDG+F L P+++ L + E +++V Q C FT LFQPVPYS GTP GMPREFE +H + YAI NVPP MFKAKIF P RLCA++
Sbjct: 4 LKIVNNFDGSFVLEPDAQTHLFSLLNGESFRQQVAGQLHCQDLEFTELLFQPVPYSEGTPKGMPREFEQYHESDDYAIINVPPNFMFKAKIFNPSRLCAIY 104
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|505027565|ref|WP_015214667.1| (hypothetical protein [Anabaena cylindrica] >gi|428679266|gb|AFZ58032.1| hypothetical protein Anacy_2590 [Anabaena cylindrica PCC 7122] >gi|1210085860|dbj|BAY05002.1| hypothetical protein NIES19_42710 [Anabaena cylindrica PCC 7122]) HSP 1 Score: 117.472 bits (293), Expect = 3.214e-30 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
L+ V+ FD +FTL+PE++ L + E ++C+ +C FT LFQPVPYSP TP GMP EFE +H + Y I NVPP MF AKIF+P RLCA++
Sbjct: 2 SLKIVQNFDSSFTLAPEAQETLFKLLTSESFLSQICQNWQCEKIEFTEMLFQPVPYSPATPKGMPAEFEQYHKSEDYTIINVPPNFMFNAKIFRPSRLCAIY 103
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1210167742|dbj|BAY86823.1| (hypothetical protein NIES267_63340 [Calothrix parasitica NIES-267]) HSP 1 Score: 116.316 bits (290), Expect = 7.399e-30 Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
L+ ++ FD +F L P+++ L + E K+V +Q+KC FT LFQPVPYS TP GMP EFE +H + YAI NVPP MFKAKIFKP RLCA++
Sbjct: 2 ALKIIQNFDSSFALEPQAKATLFELLINESFLKQVSQQSKCEQVEFTELLFQPVPYSSTTPKGMPAEFEKYHESQDYAIVNVPPNFMFKAKIFKPSRLCAIY 103
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|654348926|ref|WP_027842279.1| (hypothetical protein [Mastigocoleus testarum] >gi|959132603|gb|KST67756.1| hypothetical protein BC008_44225 [Mastigocoleus testarum BC008]) HSP 1 Score: 115.161 bits (287), Expect = 2.402e-29 Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 0
Query: 47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
L+ +++FDG+F L +++ +L + E+ ++C+ KC +FT LFQPVPYS TP GMP+EFE +H + Y I NVPP MF AKIFKP RLCA++
Sbjct: 2 ALKIIQSFDGSFVLDAKAKEILFNLLNSENFIGQICQTLKCKDIKFTELLFQPVPYSINTPKGMPKEFEKYHKSDDYLIVNVPPNFMFNAKIFKPSRLCAIY 103
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|746973108|gb|KIF29770.1| (hypothetical protein PI95_54270 [Hassallia byssoidea VB512170]) HSP 1 Score: 115.161 bits (287), Expect = 2.734e-29 Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 0
Query: 48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
+ ++ FD +FTL PE + L + E K+VC+Q C FT LFQPVPYS TP GMP EFE +H N YAI NVPP MF AKIFKP RLCA++
Sbjct: 3 FKIIQNFDSSFTLEPELQKSLFSLLTSEAFLKQVCQQLNCEKVEFTELLFQPVPYSLTTPKGMPGEFEKYHDNSEYAIINVPPNFMFNAKIFKPSRLCAIY 103
BLAST of EWM25246.1 vs. NCBI_GenBank
Match: gi|1120204215|ref|WP_073071864.1| (hypothetical protein [Phormidesmis priestleyi]) HSP 1 Score: 115.161 bits (287), Expect = 2.751e-29 Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 47 GLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 148
G++ +E FD +F+L PE + L ++ E ++V + KC FT LFQPVPY+ TP GMP EFE FH + YAI NVPP MFKAK+FKP RLCA++
Sbjct: 2 GIKIIENFDSSFSLDPEVKTALFELLKSEAFLQQVAQALKCDQVEFTELLFQPVPYTTATPKGMPAEFEKFHNSADYAIVNVPPNFMFKAKVFKPSRLCAIY 103 The following BLAST results are available for this feature:
BLAST of EWM25246.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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