rna5437, rna5437 (mRNA) Nannochloropsis gaditana

Overview
Namerna5437
Unique Namerna5437
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length965
Alignment locationCM002465.1:994095..994665 -

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Properties
Property NameValue
Producteukaryotic translation initiation factor 5b
Orig transcript idgnl|cribi|Naga_102399g1.1210.mrna
Orig protein idgnl|cribi|Naga_102399g1.1210
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:994095..994665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102399g1gene5257Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5437rna5437-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25249.1cds5424Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5437 ID=rna5437|Name=rna5437|organism=Nannochloropsis gaditana|type=mRNA|length=965bp
GTGAGCCGGCTTTTTGGACGATAAGGTCCCTTGCAAAATCCCTTTGCGAT
GTGCAATGACCGGATGTCCAGGGATTGACGATAATTGTTTTCAGGAATGA
AGTGGGGCGGTGTTTTCAGAAAAAAGGAAGAAAACCGTGTTGTTTTGGCC
TTGTAGAAAATGAGCTGCGAAAGATAGTCAAATATTGGTCTGTTGCAGAC
TCCTTGAATCTTGAAGTAAGGTGAGTGTCTATACCCGCCGTCCTGATTTG
CGTCATTTCACACGAGGTGTGTCCCACATTCTGATATCAATCGCCGTCCT
GTCAAAATTTTGACCCGGAAGTGTTTGGATCTCTTCAATATTGCGATGCG
AAGATGACATGATGTGAATGTAAAATATGCGAGGCTGTGAAATGAGAGGA
GGAACAGCAAGATATACACAAGACTCAGCCAAGCTATTATCATCTTTTGC
TTTCTTTCCTTTTTAGTGTGAAAGTTCTCCTCCCCCACCCTCTCTTGAGT
CCTTGGCTCGATCCCCACCACATGCTGGAAGACATCGCCCAGCAACTCGA
GTTTACCGAGATCCTCCTCCTATTTCTGCGCAATCAAAGAATGCCAAAGA
CCTTTTTCAAATCTATGACCAACCGCCAGTCGTCGTTGGAGAGTTCATCT
TTGAAATGGGACTTGAGGGCATCGATGCTCTCTCGGGTAATGCGGGAGTA
CACTGCCATGCAGGAAAAAAGGAGGACAAAGGACGAGGTCATGAAGAGAT
TGAGAGGTAAACTAAAAAAACCAGCACACCATTCCCCCGAATCGAGGATG
AAGCGATGCTCAGAGAAGAGAGAGGAAGGTGTATTACAGGCCAGACGGGA
GCCCTCCACCTCCGAACATGTCGCCATCGACCCGTCACTTTCCCTCCCCT
TTCTCCCTCCCCTCTTTCCTCCCTTCCTTCCACTCTCTCAAACTCACCTG
GATTTTCGGCTGTAA
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protein sequence of rna5437

>rna5437-protein ID=rna5437-protein|Name=rna5437|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILA
FDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC
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mRNA from alignment at CM002465.1:994095..994665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5437 ID=rna5437|Name=rna5437|organism=Nannochloropsis gaditana|type=mRNA|length=571bp|location=Sequence derived from alignment at CM002465.1:994095..994665- (Nannochloropsis gaditana)
ATGGACGTCTCTCTGAGATCTTCCCTCCCTCCTCCCATCCTTCCATCCCT
CCCCCTCTCCCTCCCTCCCTTCCTCCACAGGCGCCTTGGAGGCCCTCCTG
GAATACCTGCGGAAAGAGTGCAAGCCCCCCGTTCCTGTGGCTCGTGTAGG
AATTGGGCCCATATTTAAAAAGGACGTGACACAGACGGGCACGAACATCG
AAAAAGGTGCCGTCCCTCATTCCCTCCCTCCCTCCCTCCCTTCCTCCCTT
CCTCCCTCTCTCCTTCCCTCCTTCCCGTCCTAGCGTCCCGGGGAAGGACT
TGCGCCACTCCCTTTGGGAACCTGCTCTCATTCCGCCCTTCCCTCCCTCC
CTCCTTCCCTCCCTCCCCTATGTCTTCCTGTGTCGAATTCAGGCCTCAAG
GAGTTCGCTTGTATTCTGGCTTTCGATGTTAAGGTGGACGCGGATGCGCG
GGCTCACGCTGATGAGGTGAGGAGGGGAAGCAGGAAGAAAGTTGGAGAGC
AAGGGCGGGAGGGAGGACAGGGAGGAGGGAGGGAGGAAGAAGAAGGGACT
GAGAGGAAGACTCACTGCTAA
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Coding sequence (CDS) from alignment at CM002465.1:994095..994665-

>rna5437 ID=rna5437|Name=rna5437|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002465.1:994095..994665- (Nannochloropsis gaditana)
GCCTCAAGGAGTTCGCTTGTATTCTGGCTTTCGATGTTAAGGTGGACGCG
GATGCGCGGGCTCACGCTGATGAGGTGAGGAGGGGAAGCAGGAAGAAAGT
TGGAGAGCAAGGGCGGGAGGGAGGACAGGGAGGAGGGAGGGAGGAAGAAG
AAGGGACTGAGAGGAAGACTCACTGCTAAGCCCTCCTGGAATACCTGCGG
AAAGAGTGCAAGCCCCCCGTTCCTGTGGCTCGTGTAGGAATTGGGCCCAT
ATTTAAAAAGGACGTGACACAGACGGGCACGAACATCGAAAAAGATGGAC
GCCTCAAGGAGTTCGCTTGTATTCTGGCTTTCGATGTTAAGGTGGACGCG
GATGCGCGGGCTCACGCTGATGAGGTGAGGAGGGGAAGCAGGAAGAAAGT
TGGAGAGCAAGGGCGGGAGGGAGGACAGGGAGGAGGGAGGGAGGAAGAAG
AAGGGACTGAGAGGAAGACTCACTGCTAAGCCCTCCTGGAATACCTGCGG
AAAGAGTGCAAGCCCCCCGTTCCTGTGGCTCGTGTAGGAATTGGGCCCAT
ATTTAAAAAGGACGTGACACAGACGGGCACGAACATCGAAAAAGATGGAC
GCCTCAAGGAGTTCGCTTGTATTCTGGCTTTCGATGTTAAGGTGGACGCG
GATGCGCGGGCTCACGCTGATGAGGTGAGGAGGGGAAGCAGGAAGAAAGT
TGGAGAGCAAGGGCGGGAGGGAGGACAGGGAGGAGGGAGGGAGGAAGAAG
AAGGGACTGAGAGGAAGACTCACTGCTAAGCCCTCCTGGAATACCTGCGG
AAAGAGTGCAAGCCCCCCGTTCCTGTGGCTCGTGTAGGAATTGGGCCCAT
ATTTAAAAAGGACGTGACACAGACGGGCACGAACATCGAAAAAGATGGAC
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Synonyms
Publications