EWM25249.1, cds5424 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|585106947|gb|EWM25249.1| (eukaryotic translation initiation factor 5b [Nannochloropsis gaditana]) HSP 1 Score: 199.519 bits (506), Expect = 8.398e-65 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC 99
MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC
Sbjct: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC 99
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|299472031|emb|CBN80114.1| (EIF5B, eukaryotic translation initiation factor 5B [Ectocarpus siliculosus]) HSP 1 Score: 88.5817 bits (218), Expect = 1.940e-18 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADE 65
++AL+++LRKEC PP+PV VGIG +FKKDV + EKG E+A ILAFDVK+D+DAR +ADE
Sbjct: 802 LEALMQFLRKECDPPIPVFAVGIGAVFKKDVMRASIMNEKGTPEYATILAFDVKIDSDARRYADE 866
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|1147822308|ref|XP_020119396.1| (hypothetical protein UA08_05409 [Talaromyces atroroseus] >gi|1118539012|gb|OKL59275.1| hypothetical protein UA08_05409 [Talaromyces atroroseus]) HSP 1 Score: 79.7221 bits (195), Expect = 2.264e-15 Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+L+ +PV+ + IGP+FK+DV GT +EKGLKEFA +L FDVKVD +A+A+ADEV
Sbjct: 838 LEALLEFLKVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEFAVMLCFDVKVDKEAQAYADEV 900
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|397624917|gb|EJK67576.1| (hypothetical protein THAOC_11369 [Thalassiosira oceanica]) HSP 1 Score: 78.9518 bits (193), Expect = 3.819e-15 Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVR 67
++ALL++LR+E KPP+PV+ +GIG I K+DVT+ EKG E+A ILAFDV +D +AR A+EV
Sbjct: 266 LEALLQFLREETKPPIPVSAIGIGTIHKRDVTKISIMNEKGCSEYATILAFDVPIDKEAREQAEEVN 332
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|212540314|ref|XP_002150312.1| (mitochondrial translation initiation factor IF-2, putative [Talaromyces marneffei ATCC 18224] >gi|210067611|gb|EEA21703.1| mitochondrial translation initiation factor IF-2, putative [Talaromyces marneffei ATCC 18224]) HSP 1 Score: 78.5666 bits (192), Expect = 6.047e-15 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+LR +PV+ + IGP+FK+DV GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct: 833 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 895
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|679989138|gb|KFX42143.1| (Eukaryotic translation initiation factor 5B [Talaromyces marneffei PM1]) HSP 1 Score: 78.5666 bits (192), Expect = 6.105e-15 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+LR +PV+ + IGP+FK+DV GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct: 828 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 890
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|242802352|ref|XP_002483954.1| (mitochondrial translation initiation factor IF-2, putative [Talaromyces stipitatus ATCC 10500] >gi|218717299|gb|EED16720.1| mitochondrial translation initiation factor IF-2, putative [Talaromyces stipitatus ATCC 10500]) HSP 1 Score: 78.5666 bits (192), Expect = 7.134e-15 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+LR +PV+ + IGP+FK+DV GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct: 832 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 894
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|816188081|emb|CRG90270.1| (Eukaryotic translation initiation factor 5B [Talaromyces islandicus]) HSP 1 Score: 78.5666 bits (192), Expect = 7.272e-15 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+L+ +PV+ + IGP+FK+DV GT +EKGLKE+A +L FDVKVD +A+A+ADEV
Sbjct: 824 LEALLEFLKVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADEV 886
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|219129822|ref|XP_002185079.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403574|gb|EEC43526.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.411 bits (189), Expect = 1.686e-14 Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALL++LR+E KPP+PV+ +GIG I K+DVT+ EKG EFA ILAFDV ++ +AR HA+++
Sbjct: 367 LEALLQFLREETKPPIPVSAIGIGRIHKRDVTKISIMNEKGHPEFATILAFDVDIEREAREHAEDM 432
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|748555928|dbj|GAM38198.1| (translation initiation factor [Talaromyces cellulolyticus]) HSP 1 Score: 77.0258 bits (188), Expect = 2.165e-14 Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0
Query: 1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
++ALLE+LR +PV+ + IGP+FK+DV GT +EKG KE+A +L FDVKVD +A+A+AD+V
Sbjct: 1170 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGFKEYAVMLCFDVKVDKEAQAYADDV 1232 The following BLAST results are available for this feature:
BLAST of EWM25249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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