EWM25249.1, cds5424 (CDS) Nannochloropsis gaditana

Overview
NameEWM25249.1
Unique Namecds5424
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:994660..994665 -
Alignment locationCM002465.1:994460..994574 -
Alignment locationCM002465.1:994095..994273 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25249.1
Producteukaryotic translation initiation factor 5b
Orig transcript idgnl|cribi|Naga_102399g1.1210.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:994660..994665 -
CM002465.1supercontigCM002465.1:994460..994574 -
CM002465.1supercontigCM002465.1:994095..994273 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR023115TIF_IF2_dom3
Homology
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|585106947|gb|EWM25249.1| (eukaryotic translation initiation factor 5b [Nannochloropsis gaditana])

HSP 1 Score: 199.519 bits (506), Expect = 8.398e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC 99
            MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC
Sbjct:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVRRGSRKKVGEQGREGGQGGGREEEEGTERKTHC 99          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|299472031|emb|CBN80114.1| (EIF5B, eukaryotic translation initiation factor 5B [Ectocarpus siliculosus])

HSP 1 Score: 88.5817 bits (218), Expect = 1.940e-18
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADE 65
            ++AL+++LRKEC PP+PV  VGIG +FKKDV +     EKG  E+A ILAFDVK+D+DAR +ADE
Sbjct:  802 LEALMQFLRKECDPPIPVFAVGIGAVFKKDVMRASIMNEKGTPEYATILAFDVKIDSDARRYADE 866          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|1147822308|ref|XP_020119396.1| (hypothetical protein UA08_05409 [Talaromyces atroroseus] >gi|1118539012|gb|OKL59275.1| hypothetical protein UA08_05409 [Talaromyces atroroseus])

HSP 1 Score: 79.7221 bits (195), Expect = 2.264e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+L+      +PV+ + IGP+FK+DV   GT +EKGLKEFA +L FDVKVD +A+A+ADEV
Sbjct:  838 LEALLEFLKVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEFAVMLCFDVKVDKEAQAYADEV 900          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|397624917|gb|EJK67576.1| (hypothetical protein THAOC_11369 [Thalassiosira oceanica])

HSP 1 Score: 78.9518 bits (193), Expect = 3.819e-15
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEVR 67
            ++ALL++LR+E KPP+PV+ +GIG I K+DVT+     EKG  E+A ILAFDV +D +AR  A+EV 
Sbjct:  266 LEALLQFLREETKPPIPVSAIGIGTIHKRDVTKISIMNEKGCSEYATILAFDVPIDKEAREQAEEVN 332          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|212540314|ref|XP_002150312.1| (mitochondrial translation initiation factor IF-2, putative [Talaromyces marneffei ATCC 18224] >gi|210067611|gb|EEA21703.1| mitochondrial translation initiation factor IF-2, putative [Talaromyces marneffei ATCC 18224])

HSP 1 Score: 78.5666 bits (192), Expect = 6.047e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+LR      +PV+ + IGP+FK+DV   GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct:  833 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 895          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|679989138|gb|KFX42143.1| (Eukaryotic translation initiation factor 5B [Talaromyces marneffei PM1])

HSP 1 Score: 78.5666 bits (192), Expect = 6.105e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+LR      +PV+ + IGP+FK+DV   GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct:  828 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 890          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|242802352|ref|XP_002483954.1| (mitochondrial translation initiation factor IF-2, putative [Talaromyces stipitatus ATCC 10500] >gi|218717299|gb|EED16720.1| mitochondrial translation initiation factor IF-2, putative [Talaromyces stipitatus ATCC 10500])

HSP 1 Score: 78.5666 bits (192), Expect = 7.134e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+LR      +PV+ + IGP+FK+DV   GT +EKGLKE+A +L FDVKVD +A+A+AD+V
Sbjct:  832 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADDV 894          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|816188081|emb|CRG90270.1| (Eukaryotic translation initiation factor 5B [Talaromyces islandicus])

HSP 1 Score: 78.5666 bits (192), Expect = 7.272e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+L+      +PV+ + IGP+FK+DV   GT +EKGLKE+A +L FDVKVD +A+A+ADEV
Sbjct:  824 LEALLEFLKVS---KIPVSNISIGPVFKRDVMLAGTMLEKGLKEYAVMLCFDVKVDKEAQAYADEV 886          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|219129822|ref|XP_002185079.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403574|gb|EEC43526.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.411 bits (189), Expect = 1.686e-14
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALL++LR+E KPP+PV+ +GIG I K+DVT+     EKG  EFA ILAFDV ++ +AR HA+++
Sbjct:  367 LEALLQFLREETKPPIPVSAIGIGRIHKRDVTKISIMNEKGHPEFATILAFDVDIEREAREHAEDM 432          
BLAST of EWM25249.1 vs. NCBI_GenBank
Match: gi|748555928|dbj|GAM38198.1| (translation initiation factor [Talaromyces cellulolyticus])

HSP 1 Score: 77.0258 bits (188), Expect = 2.165e-14
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0
Query:    1 MDALLEYLRKECKPPVPVARVGIGPIFKKDVTQTGTNIEKGLKEFACILAFDVKVDADARAHADEV 66
            ++ALLE+LR      +PV+ + IGP+FK+DV   GT +EKG KE+A +L FDVKVD +A+A+AD+V
Sbjct: 1170 LEALLEFLRVS---KIPVSNISIGPVFKRDVMLAGTMLEKGFKEYAVMLCFDVKVDKEAQAYADDV 1232          
The following BLAST results are available for this feature:
BLAST of EWM25249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106947|gb|EWM25249.1|8.398e-65100.00eukaryotic translation initiation factor 5b [Nanno... [more]
gi|299472031|emb|CBN80114.1|1.940e-1860.00EIF5B, eukaryotic translation initiation factor 5B... [more]
gi|1147822308|ref|XP_020119396.1|2.264e-1556.06hypothetical protein UA08_05409 [Talaromyces atror... [more]
gi|397624917|gb|EJK67576.1|3.819e-1553.73hypothetical protein THAOC_11369 [Thalassiosira oc... [more]
gi|212540314|ref|XP_002150312.1|6.047e-1554.55mitochondrial translation initiation factor IF-2, ... [more]
gi|679989138|gb|KFX42143.1|6.105e-1554.55Eukaryotic translation initiation factor 5B [Talar... [more]
gi|242802352|ref|XP_002483954.1|7.134e-1554.55mitochondrial translation initiation factor IF-2, ... [more]
gi|816188081|emb|CRG90270.1|7.272e-1554.55Eukaryotic translation initiation factor 5B [Talar... [more]
gi|219129822|ref|XP_002185079.1|1.686e-1453.03predicted protein, partial [Phaeodactylum tricornu... [more]
gi|748555928|dbj|GAM38198.1|2.165e-1453.03translation initiation factor [Talaromyces cellulo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5437rna5437Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications