rna5434, rna5434 (mRNA) Nannochloropsis gaditana

Overview
Namerna5434
Unique Namerna5434
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length648
Alignment locationCM002465.1:986776..987567 +

Link to JBrowse

Properties
Property NameValue
ProductZinc finger, RING/FYVE/PHD-type
Orig transcript idgnl|cribi|Naga_102006g2.1543.mrna
Orig protein idgnl|cribi|Naga_102006g2.1543
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:986776..987567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102006g2gene5254Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5434rna5434-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25252.1cds5421Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5434 ID=rna5434|Name=rna5434|organism=Nannochloropsis gaditana|type=mRNA|length=648bp
CCACTTCCGTTGCGATATGCGATTTAATTAATGCTTTACAAATCAATGAC
TTCTTCCCCCTCTTAGTCTGCAGGCAAAAATGGAGGCAGCCGTGGACTCT
GCTATGGTGGCTATACAACAGGAGGCTAAAAAATTGCGGAGTGATGGTCA
GCAAGGTCTCGATGTGGTAGAGAACGACATAAATGTAAGGGAGTAAGAAC
GGGGGCAGGAGAGGAGGGAAACAAAATCCTTTTACGAGAGAAGCACATCT
ATGATTATTAAAATGGTTTAGATGGGGTGTAGGGAGCTTGAGAAGAAAAA
CGGGGTGAAGGAAATGGGAGAGCGAGAGAAGAGGAGTTGGAATGCAGTGT
CACATCACACACTCCCCTCTTTCGAATACCTTGATTTGAGTGATGTGGCC
AATTCCTATTACCAGAGTAAGCAATACAATGGAAAAGGTAACGAGCATGT
GCCATTTGGGAGCACACAGCTTCACAAAGCTCACGCTTGTCCCTCCCCCT
GCCCCCTCCAGGCAGTCTTCAGGTTCCTCAAATTGGCCGTCACCAACGAC
TTGAACGCGATCAAGACTGAGCAGGCATTCTACCGCGCACAAATAGATCG
CGTTAAGGTAACCTGCCCAACAGTGGGAGAAGAAGACGGGGGGGGGGG
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protein sequence of rna5434

>rna5434-protein ID=rna5434-protein|Name=rna5434|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVL
VLRFERQTQGVFMASQRDAGAEEVEE
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mRNA from alignment at CM002465.1:986776..987567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5434 ID=rna5434|Name=rna5434|organism=Nannochloropsis gaditana|type=mRNA|length=792bp|location=Sequence derived from alignment at CM002465.1:986776..987567+ (Nannochloropsis gaditana)
TGCATCATCCTCGTTTCGCTGTTCCATCGCAGTGCTGTTCCCTTCCCGTA
ATCCAAAACCCACACcacaccttcctccctccctccctccctcgctccct
cccatactccctccctccctccctcaggacCTGGAAATCGTGGAACGCCC
GGGCGCCGACCCCCTCCAGCTGCGTTGCCCCATCACCCAGTCCACTTACG
TAGAGCCCATGCGAAACGAACCTTGTGGTCACACCTACAGCAAGGCGGGA
ATCATGCAAAGCTTGCGGAAGAAGCACGAGgtccgcccgcccgcccgccc
tccctccctttctccctgccttcttccctccctccctcccttcagtcctt
tcccccctccccgaaGACGTGTCTATCTTTTCCTCTGGGGGGGCTCCTTA
TCTCTCTCTTTGGGAGGAAACTTTCTCCGTCGACTTTGCAGGAAAAGAAG
TCACTGGAAAACGCTGTCAGACTCCAACCTCGTGCACCCTCTttaccccc
ctcccccccgcccgccctccctccctccctcctcccttcctcgtgtAGGT
CAAGTGCCCCGTACCTGGATGCAACAAGGCCGTTCGCGCCGCGTCCTTGG
AGCGAgaccgggaaaaggaggtaTTGGTGCTGCGCTTCGAGCGGCAGACG
CAAGGTGTATTCATGGCCTCCCAGAGGGACgcgggagcggaggaggtgga
ggaatgaaggatgggagggagggagggagggagggagggagggagggagg
ccgaagCATTGTAAATAAAGAAGCAAGAGATGCAGTCAGACA
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Coding sequence (CDS) from alignment at CM002465.1:986776..987567+

>rna5434 ID=rna5434|Name=rna5434|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002465.1:986776..987567+ (Nannochloropsis gaditana)
ATGCGAAACGAACCTTGTGGTCACACCTACAGCAAGGCGGGAATCATGCA
AAGCTTGCGGAAGAAGCACGAGGTCAAGTGCCCCGTACCTGGATGCAACA
AGGCCGTTCGCGCCGCGTCCTTGGAGCGAgaccgggaaaaggaggtaTTG
GTGCTGCGCTTCGAGCGGCAGACGCAAGGTGTATTCATGGCCTCCCAGAG
GGACgcgggagcggaggaggtggaggaatgaATGCGAAACGAACCTTGTG
GTCACACCTACAGCAAGGCGGGAATCATGCAAAGCTTGCGGAAGAAGCAC
GAGGTCAAGTGCCCCGTACCTGGATGCAACAAGGCCGTTCGCGCCGCGTC
CTTGGAGCGAgaccgggaaaaggaggtaTTGGTGCTGCGCTTCGAGCGGC
AGACGCAAGGTGTATTCATGGCCTCCCAGAGGGACgcgggagcggaggag
gtggaggaatga
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Synonyms
Publications