EWM25252.1, cds5421 (CDS) Nannochloropsis gaditana

Overview
NameEWM25252.1
Unique Namecds5421
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:986984..987055 +
Alignment locationCM002465.1:987324..987482 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25252.1
ProductZinc finger, RING/FYVE/PHD-type
Orig transcript idgnl|cribi|Naga_102006g2.1543.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:986984..987055 +
CM002465.1supercontigCM002465.1:987324..987482 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|585106955|gb|EWM25252.1| (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana])

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE 76
            MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE
Sbjct:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE 76          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|929749471|ref|XP_014149719.1| (hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610] >gi|906941497|gb|KNC75817.1| hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610])

HSP 1 Score: 62.7734 bits (151), Expect = 2.213e-10
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVE 75
            M+N  CGH YSKAGIMQ + +   +KCP+ GC K VR  +L+ D   E ++ RF+R      M SQ+   +  VE
Sbjct:  123 MKNSVCGHRYSKAGIMQMIGEHPSIKCPIGGCGKTVRRNTLQHDPRFEKILKRFQRT-----MDSQQHEQSSNVE 192          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|1173928297|gb|OQR81930.1| (hypothetical protein THRCLA_11278 [Thraustotheca clavata])

HSP 1 Score: 57.7658 bits (138), Expect = 4.488e-8
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQ 59
            ++N  CGHTYSK GI+  LR+K+   CP+ GC + V   SLER+ E EVL+ R +++ Q
Sbjct:  200 VQNRACGHTYSKNGIVAHLRRKN--GCPIAGCREKVTMDSLERNVEMEVLIARKQQRIQ 256          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|219111079|ref|XP_002177291.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411826|gb|EEC51754.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 57.3806 bits (137), Expect = 5.360e-8
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGC-NKAVRAASLERDREKEVLV 51
            ++N+ C H YSKAGIMQ + +K   KCPVPGC N  V    LE+D +K++LV
Sbjct:  210 VKNKTCKHVYSKAGIMQLMGQKGFCKCPVPGCGNHQVTLVQLEKDLQKDMLV 261          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|813205421|ref|XP_012209997.1| (hypothetical protein SPRG_15225 [Saprolegnia parasitica CBS 223.65] >gi|641524745|gb|KDO19286.1| hypothetical protein SPRG_15225 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 56.9954 bits (136), Expect = 7.536e-8
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRF 54
            MRN+ CGHTYSKAGI   L++K+   CP+ GC + V    LERD E EV + R 
Sbjct:  209 MRNKRCGHTYSKAGITAHLKRKN--ACPIGGCREKVGLHDLERDVEMEVRIARL 260          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|635372583|emb|CCI39387.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 56.6102 bits (135), Expect = 8.282e-8
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGV 61
            +RN  CGH+YS+ GI+  L++    KCPV GC   +    LERD E EV++ R  R +QG+
Sbjct:  163 LRNAACGHSYSEQGILAHLKRSK--KCPVAGCQAVIVDQKLERDVEMEVMISRM-RNSQGL 220          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|1214711696|gb|OWZ22688.1| (hypothetical protein PHMEG_0002568 [Phytophthora megakarya])

HSP 1 Score: 55.8398 bits (133), Expect = 1.785e-7
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRF---ERQTQGVFMASQ 66
            ++N  CGHTYSK GI   L++    KCPV GC + +   SLERD E EV++ R    ++++Q V  A Q
Sbjct:  163 LKNPGCGHTYSKKGIQAHLQRNK--KCPVAGCPQKLSFNSLERDVEMEVIISRLASEQQRSQAVAAAGQ 229          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|675205681|ref|XP_008911725.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|567952051|gb|ETK77734.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567980718|gb|ETL31171.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568010221|gb|ETL84411.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568088319|gb|ETN03181.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570318342|gb|ETO66290.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570942125|gb|ETP07382.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570972635|gb|ETP35433.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 55.0694 bits (131), Expect = 2.484e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
            +RN  CGHTYSK GI   L++    KCPV GC + +   SLERD E EV++ R
Sbjct:  163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|675205679|ref|XP_008911724.1| (hypothetical protein PPTG_16136 [Phytophthora parasitica INRA-310] >gi|567952050|gb|ETK77733.1| hypothetical protein L915_16057 [Phytophthora parasitica] >gi|567980717|gb|ETL31170.1| hypothetical protein L916_15950 [Phytophthora parasitica] >gi|568010220|gb|ETL84410.1| hypothetical protein L917_15751 [Phytophthora parasitica] >gi|568088318|gb|ETN03180.1| hypothetical protein PPTG_16136 [Phytophthora parasitica INRA-310] >gi|570318341|gb|ETO66289.1| hypothetical protein F444_16500 [Phytophthora parasitica P1976] >gi|570942124|gb|ETP07381.1| hypothetical protein F441_16341 [Phytophthora parasitica CJ01A1] >gi|570972634|gb|ETP35432.1| hypothetical protein F442_16367 [Phytophthora parasitica P10297])

HSP 1 Score: 55.0694 bits (131), Expect = 3.116e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
            +RN  CGHTYSK GI   L++    KCPV GC + +   SLERD E EV++ R
Sbjct:  163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213          
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|566014588|gb|ETI37499.1| (hypothetical protein F443_16530 [Phytophthora parasitica P1569] >gi|568040139|gb|ETM37603.1| hypothetical protein L914_15885 [Phytophthora parasitica])

HSP 1 Score: 55.0694 bits (131), Expect = 3.180e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
            +RN  CGHTYSK GI   L++    KCPV GC + +   SLERD E EV++ R
Sbjct:  163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213          
The following BLAST results are available for this feature:
BLAST of EWM25252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106955|gb|EWM25252.1|4.435e-49100.00Zinc finger, RING/FYVE/PHD-type [Nannochloropsis g... [more]
gi|929749471|ref|XP_014149719.1|2.213e-1042.67hypothetical protein SARC_11666, partial [Sphaerof... [more]
gi|1173928297|gb|OQR81930.1|4.488e-847.46hypothetical protein THRCLA_11278 [Thraustotheca c... [more]
gi|219111079|ref|XP_002177291.1|5.360e-851.92predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|813205421|ref|XP_012209997.1|7.536e-851.85hypothetical protein SPRG_15225 [Saprolegnia paras... [more]
gi|635372583|emb|CCI39387.1|8.282e-844.26unnamed protein product [Albugo candida][more]
gi|1214711696|gb|OWZ22688.1|1.785e-743.48hypothetical protein PHMEG_0002568 [Phytophthora m... [more]
gi|675205681|ref|XP_008911725.1|2.484e-750.94hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675205679|ref|XP_008911724.1|3.116e-750.94hypothetical protein PPTG_16136 [Phytophthora para... [more]
gi|566014588|gb|ETI37499.1|3.180e-750.94hypothetical protein F443_16530 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5434rna5434Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications