EWM25252.1, cds5421 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|585106955|gb|EWM25252.1| (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana]) HSP 1 Score: 157.918 bits (398), Expect = 4.435e-49 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE 76
MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE
Sbjct: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVEE 76
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|929749471|ref|XP_014149719.1| (hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610] >gi|906941497|gb|KNC75817.1| hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610]) HSP 1 Score: 62.7734 bits (151), Expect = 2.213e-10 Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGVFMASQRDAGAEEVE 75
M+N CGH YSKAGIMQ + + +KCP+ GC K VR +L+ D E ++ RF+R M SQ+ + VE
Sbjct: 123 MKNSVCGHRYSKAGIMQMIGEHPSIKCPIGGCGKTVRRNTLQHDPRFEKILKRFQRT-----MDSQQHEQSSNVE 192
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|1173928297|gb|OQR81930.1| (hypothetical protein THRCLA_11278 [Thraustotheca clavata]) HSP 1 Score: 57.7658 bits (138), Expect = 4.488e-8 Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQ 59
++N CGHTYSK GI+ LR+K+ CP+ GC + V SLER+ E EVL+ R +++ Q
Sbjct: 200 VQNRACGHTYSKNGIVAHLRRKN--GCPIAGCREKVTMDSLERNVEMEVLIARKQQRIQ 256
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|219111079|ref|XP_002177291.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411826|gb|EEC51754.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 57.3806 bits (137), Expect = 5.360e-8 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGC-NKAVRAASLERDREKEVLV 51
++N+ C H YSKAGIMQ + +K KCPVPGC N V LE+D +K++LV
Sbjct: 210 VKNKTCKHVYSKAGIMQLMGQKGFCKCPVPGCGNHQVTLVQLEKDLQKDMLV 261
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|813205421|ref|XP_012209997.1| (hypothetical protein SPRG_15225 [Saprolegnia parasitica CBS 223.65] >gi|641524745|gb|KDO19286.1| hypothetical protein SPRG_15225 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 56.9954 bits (136), Expect = 7.536e-8 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRF 54
MRN+ CGHTYSKAGI L++K+ CP+ GC + V LERD E EV + R
Sbjct: 209 MRNKRCGHTYSKAGITAHLKRKN--ACPIGGCREKVGLHDLERDVEMEVRIARL 260
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|635372583|emb|CCI39387.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 56.6102 bits (135), Expect = 8.282e-8 Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQGV 61
+RN CGH+YS+ GI+ L++ KCPV GC + LERD E EV++ R R +QG+
Sbjct: 163 LRNAACGHSYSEQGILAHLKRSK--KCPVAGCQAVIVDQKLERDVEMEVMISRM-RNSQGL 220
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|1214711696|gb|OWZ22688.1| (hypothetical protein PHMEG_0002568 [Phytophthora megakarya]) HSP 1 Score: 55.8398 bits (133), Expect = 1.785e-7 Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRF---ERQTQGVFMASQ 66
++N CGHTYSK GI L++ KCPV GC + + SLERD E EV++ R ++++Q V A Q
Sbjct: 163 LKNPGCGHTYSKKGIQAHLQRNK--KCPVAGCPQKLSFNSLERDVEMEVIISRLASEQQRSQAVAAAGQ 229
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|675205681|ref|XP_008911725.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|567952051|gb|ETK77734.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567980718|gb|ETL31171.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568010221|gb|ETL84411.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568088319|gb|ETN03181.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570318342|gb|ETO66290.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570942125|gb|ETP07382.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570972635|gb|ETP35433.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 55.0694 bits (131), Expect = 2.484e-7 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
+RN CGHTYSK GI L++ KCPV GC + + SLERD E EV++ R
Sbjct: 163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|675205679|ref|XP_008911724.1| (hypothetical protein PPTG_16136 [Phytophthora parasitica INRA-310] >gi|567952050|gb|ETK77733.1| hypothetical protein L915_16057 [Phytophthora parasitica] >gi|567980717|gb|ETL31170.1| hypothetical protein L916_15950 [Phytophthora parasitica] >gi|568010220|gb|ETL84410.1| hypothetical protein L917_15751 [Phytophthora parasitica] >gi|568088318|gb|ETN03180.1| hypothetical protein PPTG_16136 [Phytophthora parasitica INRA-310] >gi|570318341|gb|ETO66289.1| hypothetical protein F444_16500 [Phytophthora parasitica P1976] >gi|570942124|gb|ETP07381.1| hypothetical protein F441_16341 [Phytophthora parasitica CJ01A1] >gi|570972634|gb|ETP35432.1| hypothetical protein F442_16367 [Phytophthora parasitica P10297]) HSP 1 Score: 55.0694 bits (131), Expect = 3.116e-7 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
+RN CGHTYSK GI L++ KCPV GC + + SLERD E EV++ R
Sbjct: 163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213
BLAST of EWM25252.1 vs. NCBI_GenBank
Match: gi|566014588|gb|ETI37499.1| (hypothetical protein F443_16530 [Phytophthora parasitica P1569] >gi|568040139|gb|ETM37603.1| hypothetical protein L914_15885 [Phytophthora parasitica]) HSP 1 Score: 55.0694 bits (131), Expect = 3.180e-7 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0
Query: 1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLR 53
+RN CGHTYSK GI L++ KCPV GC + + SLERD E EV++ R
Sbjct: 163 LRNPSCGHTYSKKGIEAHLQRSK--KCPVAGCPQKLSFNSLERDVEMEVIIAR 213 The following BLAST results are available for this feature:
BLAST of EWM25252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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