rna5433, rna5433 (mRNA) Nannochloropsis gaditana

Overview
Namerna5433
Unique Namerna5433
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length366
Alignment locationCM002465.1:985550..986197 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101453g1.4699.mrna
Orig protein idgnl|cribi|Naga_101453g1.4699
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:985550..986197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101453g1gene5253Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5433rna5433-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25253.1cds5420Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5433 ID=rna5433|Name=rna5433|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
CCCTCCCTCCAGGCCGCATGTCGACCAAGGAGGTGGATGAACAAATGCTT
TCCGTTATCAACAAGAATTCCTCCTACTTCGTGGAATGGATTCCCAACAA
CGTGCTCTCCTCCATATGCGACATTCCTCCGCGCGGCCTCAAGATGTCCG
CTACCTTCGTGGGCAACACCACCGCGATCCAGGATGTCTGGAAGCGAATC
TCCGAGCAATTCACAGCCATGTTCCGGCGCAAGGCTTTCCTTCACTGGTG
AGGAGGGAGAGAGAGAGAGAAGAAGGGAGGGAGGGAGGGAGGGAGGAATC
GTTCACGTTTGCCAAGGGCCATGCGGTGTACCCTCGACCAGAGAGCAACC
TTGTCGTCTCCTTATC
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protein sequence of rna5433

>rna5433-protein ID=rna5433-protein|Name=rna5433|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MGCRELEKKNGVKEMGEREKRSWNAVSHHTLPSFEYLDLSDVANSYYQSK
QYNGKGNEHVPFGSTQLHKAHACPSPCPLQAVFRFLKLAVTNDLNAIKTE
QAFYRAQIDRVKVTCPTVGEEDGGGG
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mRNA from alignment at CM002465.1:985550..986197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5433 ID=rna5433|Name=rna5433|organism=Nannochloropsis gaditana|type=mRNA|length=648bp|location=Sequence derived from alignment at CM002465.1:985550..986197+ (Nannochloropsis gaditana)
CCACTTCCGTTGCGATATGCGATTTAATTAATGCTTTACAAATCAATgac
ttcttccccctcttaGTCTGCAGGCAAAAATGGAGGCAGCCGTGGACTCT
GCTATGGTGGCTATACAACAGGAGGCTAAAAAATTGCGGAGTGATGGTCA
GCAAGGTCTCGATGTGGTAGAGAACGACATAAATGTAAGGGAGTAAGaac
gggggcaggagaggagggaaacaaAATCCTTTTACGAGAGAAGCACATCT
ATGATTATTAAAATGGTTTAGATGGGGTGTAGGGAGCTTGAGAAGAAAAA
CGGGGTGAAGGAAATGGGAGAGcgagagaagaggagttgGAATGCAGTGT
CACATCACACACTCCCCTCTTTCGAATACCTTGATTTGAGTGATGTGGCC
AATTCCTATTACCAGAGTAAGCAATACAATGGAAAAGGTAACGAGCATGT
GCCATTTGGGAGCACACAGCTTCACAAAGCTCAcgcttgtccctccccct
gccccctccaggCAGTCTTCAGGTTCCTCAAATTGGCCGTCACCAACGAC
TTGAACGCGATCAAGACTGAGCAGGCATTCTACCGCGCACAAATAGATCG
CGTTAAGGTAACCTGCCCAAcagtgggagaagaagacggggggggggg
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Coding sequence (CDS) from alignment at CM002465.1:985550..986197+

>rna5433 ID=rna5433|Name=rna5433|organism=Nannochloropsis gaditana|type=CDS|length=377bp|location=Sequence derived from alignment at CM002465.1:985550..986197+ (Nannochloropsis gaditana)
ATGGGGTGTAGGGAGCTTGAGAAGAAAAACGGGGTGAAGGAAATGGGAGA
GcgagagaagaggagttgGAATGCAGTGTCACATCACACACTCCCCTCTT
TCGAATACCTTGATTTGAGTGATGTGGCCAATTCCTATTACCAGAGTAAG
CAATACAATGGAAAAGGTAACGAGCATGTGCCATTTGGGAGCACACAGCT
TCACAAAGCTCAcgcttgtccctccccctgccccctccaggCAGTCTTCA
GGTTCCTCAAATTGGCCGTCACCAACGACTTGAACGCGATCAAGACTGAG
CAGGCATTCTACCGCGCACAAATAGATCGCGTTAAGGTAACCTGCCCAAc
agtgggagaagaagacggggggggggg
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Synonyms
Publications