EWM25253.1, cds5420 (CDS) Nannochloropsis gaditana

Overview
NameEWM25253.1
Unique Namecds5420
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:985821..986197 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25253.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101453g1.4699.mrna
GbkeyCDS
End range.
End range986197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:985821..986197 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25253.1 vs. NCBI_GenBank
Match: gi|585106958|gb|EWM25253.1| (hypothetical protein Naga_101453g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 268.47 bits (685), Expect = 3.096e-91
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MGCRELEKKNGVKEMGEREKRSWNAVSHHTLPSFEYLDLSDVANSYYQSKQYNGKGNEHVPFGSTQLHKAHACPSPCPLQAVFRFLKLAVTNDLNAIKTEQAFYRAQIDRVKVTCPTVGEEDGGGG 126
            MGCRELEKKNGVKEMGEREKRSWNAVSHHTLPSFEYLDLSDVANSYYQSKQYNGKGNEHVPFGSTQLHKAHACPSPCPLQAVFRFLKLAVTNDLNAIKTEQAFYRAQIDRVKVTCPTVGEEDGGGG
Sbjct:    1 MGCRELEKKNGVKEMGEREKRSWNAVSHHTLPSFEYLDLSDVANSYYQSKQYNGKGNEHVPFGSTQLHKAHACPSPCPLQAVFRFLKLAVTNDLNAIKTEQAFYRAQIDRVKVTCPTVGEEDGGGG 126
[Close]
BLAST of EWM25253.1 vs. NCBI_GenBank
Match: gi|553186254|ref|XP_005854387.1| (hypothetical protein NGA_0173500 [Nannochloropsis gaditana CCMP526] >gi|422294673|gb|EKU21973.1| hypothetical protein NGA_0173500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.0922 bits (170), Expect = 1.122e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 
Query:   79 LQAVFRFLKLAVTNDLNAIKTEQAFYRAQIDRVKVTC 115
            + AVFRFLKLAVTNDLNAIKTEQAFYRAQI+RVK  C
Sbjct:   34 INAVFRFLKLAVTNDLNAIKTEQAFYRAQIERVKTKC 70
The following BLAST results are available for this feature:
BLAST of EWM25253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106958|gb|EWM25253.1|3.096e-91100.00hypothetical protein Naga_101453g1, partial [Nanno... [more]
gi|553186254|ref|XP_005854387.1|1.122e-1286.49hypothetical protein NGA_0173500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5433rna5433Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications