rna5432, rna5432 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5432
Unique Name	rna5432
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1072
Alignment location	CM002465.1:982994..983554 -

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Properties


Property Name	Value
Product	beta tubulin
Orig transcript id	gnl\|cribi\|Naga_102953g1.5700.mrna
Orig protein id	gnl\|cribi\|Naga_102953g1.5700
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:982994..983554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102953g1	gene5252	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5432	rna5432-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25254.1	cds5419	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:982994..983554-
coding sequence from alignment at CM002465.1:982994..983554-

mRNA sequence

>rna5432 ID=rna5432|Name=rna5432|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp
CCTCCCTCCCTATCTTTGTCTTCACCCTCTTCCCTCCCTTCCTGCCGTCC
TGCCTTCATCCTTCCTTTCCATCCCTCCCCTCCCCCCTTCCTAGTCCTCA
TTTTTCTCCCCTCCCTTGCGTACCTTGACCATTGGGGTGTCTCACGTTCT
TCCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTCCCTCCCTTCCTCGTTAC
CACAGGACGCGACGGTGGACGAGGAGGAAGTCTACGACGAGGAAGAGGAT
GGGATGTTGGCCTGAGCGAGCGGCCTTGTCCTCCATCCCGACCTCCCTCC
CGACCTTTCTCCCGCCTTCCCCTTTTCTTGTGACAGAGCCATGCCTGCGA
CGATGGCAGGTCTGGCAGCAAGAGGAGGCGGAGGCTTGAGAGGATAATGT
CCTCTCCACGCCGAAGTGCAGTCACCCCACCATATATAACAAGACTGAAA
AAAAAACGTCATAAAATTTGGAGAAGAAAAACACAAAAAAAAAAAGAAGC
GATGCGCCGCCACTGTGCTTTCCTACCGGTCGCGCGCTCCCTCCCTCCCT
CCCTCCCTTTCTCCTTCGTTTGTATCATGCCGTATAGGGCGGGTGCAAGA
AAGGAGGTGGACAGGTAGTGTTACGAGCACGCGCACGACGGGAGCCTCAC
GAGAAAGTTGTACGGGCAAAGCGCAGGAAAAGAAACAAAAATAGGTGACA
AAGATTGAGAGCATGTACGAGAGTGAAATTAGGCAAGGGAGGGTACGGGC
GAGACCCCCCTTTGTCTCCTGCATATGCGGTGTTAGCTTGGCTAGGACAT
AAGGAAGCACTGAACAGTAAATTCACACACACAAGGCTCACCATCGATTA
AAGGGCGCGTGGTAGGAGTGGGAGACGGTAAAGCGAGGAAAAGCAACCCG
GATGTACGCGTGAGTGACAGGAAGGAGGGCGCCAGCCGAGCCGGCATACC
ATCAAAGAACGACTGAGTATAGGTGTACGTGCAGCAAGCAAAGTCGAACC
CCTGAATTAAAAACTCAAAAAACCAAAAAACCAAAAAACCAAAACACATA
AAAACAAGCATCGCCATCACCC

protein sequence of rna5432

>rna5432-protein ID=rna5432-protein|Name=rna5432|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGN
TTAIQDVWKRISEQFTAMFRRKAFLHW

mRNA from alignment at CM002465.1:982994..983554-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5432 ID=rna5432|Name=rna5432|organism=Nannochloropsis gaditana|type=mRNA|length=561bp|location=Sequence derived from alignment at CM002465.1:982994..983554- (Nannochloropsis gaditana)
CCCTCCCTCCAGGCCGCATGTCGACCAAGGAGGTGGATGAACAAATGCTT
TCCGTTATCAACAAGAATTCCTCCTACTTCGTGGAATGGATTCCCAACAA
CGTGCTCTCCTCCATATGCGACATTCCTCCGCGCGGCCTCAAGGTGGCTT
TCACTGCCCGCCCTCTCTCCTACCCTCCCTCCCTCCCTCCCTCCCTCATT
CCCTCCCTCCCTTCAATTCCTTTACGATTGCTATCCCATGGCTGTGTAAA
AAGGCCGTGTGGATGCATCCTCTGATTCCTCACACTTCTTCCCCATCCTT
TTCCTCCCCCTCCCCCCCTCTCTCCCTCCCTCCTTCAGATGTCCGCTACC
TTCGTGGGCAACACCACCGCGATCCAGGATGTCTGGAAGCGAATCTCCGA
GCAATTCACAGCCATGTTCCGGCGCAAGGCTTTCCTTCACTGGTGAGGAG
GGAGAGAGAGAGAGAAGAAGGGAGGGAGGGAGGGAGGGAGGAATCGTTCA
CGTTTGCCAAGGGCCATGCGGTGTACCCTCGACCAGAGAGCAACCTTGTC
GTCTCCTTATC

Coding sequence (CDS) from alignment at CM002465.1:982994..983554-

>rna5432 ID=rna5432|Name=rna5432|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002465.1:982994..983554- (Nannochloropsis gaditana)
ATGTCCGCTACCTTCGTGGGCAACACCACCGCGATCCAGGATGTCTGGAA
GCGAATCTCCGAGCAATTCACAGCCATGTTCCGGCGCAAGGCTTTCCTTC
ACTGGTGAATGTCGACCAAGGAGGTGGATGAACAAATGCTTTCCGTTATC
AACAAGAATTCCTCCTACTTCGTGGAATGGATTCCCAACAACGTGCTCTC
CTCCATATGCGACATTCCTCCGCGCGGCCTCAAGATGTCCGCTACCTTCG
TGGGCAACACCACCGCGATCCAGGATGTCTGGAAGCGAATCTCCGAGCAA
TTCACAGCCATGTTCCGGCGCAAGGCTTTCCTTCACTGGTGAATGTCGAC
CAAGGAGGTGGATGAACAAATGCTTTCCGTTATCAACAAGAATTCCTCCT
ACTTCGTGGAATGGATTCCCAACAACGTGCTCTCCTCCATATGCGACATT
CCTCCGCGCGGCCTCAAG

Synonyms

Publications