EWM25254.1, cds5419 (CDS) Nannochloropsis gaditana

Overview
NameEWM25254.1
Unique Namecds5419
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:983412..983537 -
Alignment locationCM002465.1:983109..983216 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25254.1
Productbeta tubulin
Orig transcript idgnl|cribi|Naga_102953g1.5700.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:983412..983537 -
CM002465.1supercontigCM002465.1:983109..983216 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005198structural molecule activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051258protein polymerization
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005874microtubule
Vocabulary: INTERPRO
TermDefinition
IPR008280Tub_FtsZ_C
IPR000217Tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR023123Tubulin_C
IPR002453Beta_tubulin
Homology
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|585106960|gb|EWM25254.1| (beta tubulin [Nannochloropsis gaditana])

HSP 1 Score: 162.54 bits (410), Expect = 6.355e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW
Sbjct:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|223029665|gb|ACM78531.1| (beta-tubulin, partial [Pseudochattonella farcimen])

HSP 1 Score: 152.525 bits (384), Expect = 1.504e-45
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+VINKNSSYFVEWIPNNV SSICDIPP+GLKMS TF+GNTTAIQ+ WKR++EQFTAMFRRKAFLHW
Sbjct:   57 MSTKEVDEQMLNVINKNSSYFVEWIPNNVKSSICDIPPKGLKMSTTFIGNTTAIQEAWKRVAEQFTAMFRRKAFLHW 133          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|238617567|gb|ACR46916.1| (beta-tubulin, partial [Pinguiococcus pyrenoidosus])

HSP 1 Score: 155.606 bits (392), Expect = 4.173e-45
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TF+GNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct:  226 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFIGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 302          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|161015558|gb|ABX55836.1| (beta-tubulin, partial [Spumella-like flagellate JBC07])

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-45
Identity = 68/77 (88.31%), Postives = 76/77 (98.70%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ATFVGN+TAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct:  314 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMAATFVGNSTAIQEVWKRVSEQFTAMFRRKAFLHW 390          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|908447336|ref|XP_013081095.1| (PREDICTED: tubulin beta chain, partial [Biomphalaria glabrata])

HSP 1 Score: 151.754 bits (382), Expect = 5.995e-45
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V NKNSSYFVEWIPNNV +++CDIPPRGLKMSATFVGNTTAIQ+++KRISEQFTAMFRRKAFLHW
Sbjct:   72 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKTAMCDIPPRGLKMSATFVGNTTAIQELFKRISEQFTAMFRRKAFLHW 148          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|161015565|gb|ABX55839.1| (beta-tubulin, partial [Spumella-like flagellate JBC/S24])

HSP 1 Score: 155.606 bits (392), Expect = 6.400e-45
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TFVGNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct:  251 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 327          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|134142273|gb|ABO61480.1| (beta tubulin, partial [Chrysophyceae sp. I76])

HSP 1 Score: 156.377 bits (394), Expect = 1.028e-44
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR+S+QFTAMFRRKAFLHW
Sbjct:  298 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSQQFTAMFRRKAFLHW 374          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|134142255|gb|ABO61471.1| (beta tubulin, partial [Chrysophyceae sp. I8])

HSP 1 Score: 155.992 bits (393), Expect = 1.433e-44
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR+S+QFTAMFRRKAFLHW
Sbjct:  298 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSQQFTAMFRRKAFLHW 374          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|158853261|dbj|BAF91492.1| (beta-tubulin, partial [Vaucheria frigida])

HSP 1 Score: 153.295 bits (386), Expect = 1.746e-44
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQMLSV+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGN+TAIQ+VWKR++EQFTAMFRRKAFLHW
Sbjct:  217 MSTKEVDEQMLSVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNSTAIQEVWKRVAEQFTAMFRRKAFLHW 293          
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|567569500|gb|AHC92559.1| (beta tubulin subunit, partial [Spumella sp. OF-40])

HSP 1 Score: 155.992 bits (393), Expect = 1.971e-44
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query:    1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
            MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TFVGNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct:  304 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 380          
The following BLAST results are available for this feature:
BLAST of EWM25254.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106960|gb|EWM25254.1|6.355e-51100.00beta tubulin [Nannochloropsis gaditana][more]
gi|223029665|gb|ACM78531.1|1.504e-4588.31beta-tubulin, partial [Pseudochattonella farcimen][more]
gi|238617567|gb|ACR46916.1|4.173e-4587.01beta-tubulin, partial [Pinguiococcus pyrenoidosus][more]
gi|161015558|gb|ABX55836.1|5.896e-4588.31beta-tubulin, partial [Spumella-like flagellate JB... [more]
gi|908447336|ref|XP_013081095.1|5.995e-4588.31PREDICTED: tubulin beta chain, partial [Biomphalar... [more]
gi|161015565|gb|ABX55839.1|6.400e-4588.31beta-tubulin, partial [Spumella-like flagellate JB... [more]
gi|134142273|gb|ABO61480.1|1.028e-4488.31beta tubulin, partial [Chrysophyceae sp. I76][more]
gi|134142255|gb|ABO61471.1|1.433e-4488.31beta tubulin, partial [Chrysophyceae sp. I8][more]
gi|158853261|dbj|BAF91492.1|1.746e-4488.31beta-tubulin, partial [Vaucheria frigida][more]
gi|567569500|gb|AHC92559.1|1.971e-4488.31beta tubulin subunit, partial [Spumella sp. OF-40][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5432rna5432Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications