EWM25254.1, cds5419 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|585106960|gb|EWM25254.1| (beta tubulin [Nannochloropsis gaditana]) HSP 1 Score: 162.54 bits (410), Expect = 6.355e-51 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW
Sbjct: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|223029665|gb|ACM78531.1| (beta-tubulin, partial [Pseudochattonella farcimen]) HSP 1 Score: 152.525 bits (384), Expect = 1.504e-45 Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+VINKNSSYFVEWIPNNV SSICDIPP+GLKMS TF+GNTTAIQ+ WKR++EQFTAMFRRKAFLHW
Sbjct: 57 MSTKEVDEQMLNVINKNSSYFVEWIPNNVKSSICDIPPKGLKMSTTFIGNTTAIQEAWKRVAEQFTAMFRRKAFLHW 133
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|238617567|gb|ACR46916.1| (beta-tubulin, partial [Pinguiococcus pyrenoidosus]) HSP 1 Score: 155.606 bits (392), Expect = 4.173e-45 Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TF+GNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct: 226 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFIGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 302
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|161015558|gb|ABX55836.1| (beta-tubulin, partial [Spumella-like flagellate JBC07]) HSP 1 Score: 157.532 bits (397), Expect = 5.896e-45 Identity = 68/77 (88.31%), Postives = 76/77 (98.70%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ATFVGN+TAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct: 314 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMAATFVGNSTAIQEVWKRVSEQFTAMFRRKAFLHW 390
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|908447336|ref|XP_013081095.1| (PREDICTED: tubulin beta chain, partial [Biomphalaria glabrata]) HSP 1 Score: 151.754 bits (382), Expect = 5.995e-45 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V NKNSSYFVEWIPNNV +++CDIPPRGLKMSATFVGNTTAIQ+++KRISEQFTAMFRRKAFLHW
Sbjct: 72 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKTAMCDIPPRGLKMSATFVGNTTAIQELFKRISEQFTAMFRRKAFLHW 148
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|161015565|gb|ABX55839.1| (beta-tubulin, partial [Spumella-like flagellate JBC/S24]) HSP 1 Score: 155.606 bits (392), Expect = 6.400e-45 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TFVGNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct: 251 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 327
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|134142273|gb|ABO61480.1| (beta tubulin, partial [Chrysophyceae sp. I76]) HSP 1 Score: 156.377 bits (394), Expect = 1.028e-44 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR+S+QFTAMFRRKAFLHW
Sbjct: 298 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSQQFTAMFRRKAFLHW 374
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|134142255|gb|ABO61471.1| (beta tubulin, partial [Chrysophyceae sp. I8]) HSP 1 Score: 155.992 bits (393), Expect = 1.433e-44 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGNTTAIQ+VWKR+S+QFTAMFRRKAFLHW
Sbjct: 298 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSQQFTAMFRRKAFLHW 374
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|158853261|dbj|BAF91492.1| (beta-tubulin, partial [Vaucheria frigida]) HSP 1 Score: 153.295 bits (386), Expect = 1.746e-44 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQMLSV+NKNSSYFVEWIPNNV +SICDIPP+GLKMS TFVGN+TAIQ+VWKR++EQFTAMFRRKAFLHW
Sbjct: 217 MSTKEVDEQMLSVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNSTAIQEVWKRVAEQFTAMFRRKAFLHW 293
BLAST of EWM25254.1 vs. NCBI_GenBank
Match: gi|567569500|gb|AHC92559.1| (beta tubulin subunit, partial [Spumella sp. OF-40]) HSP 1 Score: 155.992 bits (393), Expect = 1.971e-44 Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MSTKEVDEQMLSVINKNSSYFVEWIPNNVLSSICDIPPRGLKMSATFVGNTTAIQDVWKRISEQFTAMFRRKAFLHW 77
MSTKEVDEQML+V+NKNSSYFVEWIPNNV +SICDIPP+GLKM+ TFVGNTTAIQ+VWKR+SEQFTAMFRRKAFLHW
Sbjct: 304 MSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHW 380 The following BLAST results are available for this feature:
BLAST of EWM25254.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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