rna5430, rna5430 (mRNA) Nannochloropsis gaditana

Overview
Namerna5430
Unique Namerna5430
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length273
Alignment locationCM002465.1:981210..981624 +

Link to JBrowse

Properties
Property NameValue
Productribosomal protein l8
Orig transcript idgnl|cribi|Naga_101784g2.9725.mrna
Orig protein idgnl|cribi|Naga_101784g2.9725
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:981210..981624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101784g2gene5250Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5430rna5430-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25256.1cds5417Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5430 ID=rna5430|Name=rna5430|organism=Nannochloropsis gaditana|type=mRNA|length=273bp
ATGTCGTACATCAAGGGCGTCGTGAAGGAGATCGTCCACGAATCCGGTCG
AGGGGCGCCTATTGCCCGCGTCCAGTTCAAGAATGCCTACAGGTTCAAGC
GGGACACGGAGAGTTTTGTGGCCGTGGAGGGAATCTACTCAGGTACGAGG
GAGGGAGGGAGGGAGGGGGGAGGGAGGGGAGGAGGAGGAAAACGGCAGCA
TGTGGGAAGACTAGGGATGGAAGTGAGAAACCGAAGTATCCAAGATTGTG
CAGATTTCGAAGCCGGTGCATGA
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protein sequence of rna5430

>rna5430-protein ID=rna5430-protein|Name=rna5430|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNA
EKDQDGGWNESGPVGMEKSTAKRRSWLSMLERKEEKTTRGTYSFCCGEGG
GGHLVVWRV
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mRNA from alignment at CM002465.1:981210..981624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5430 ID=rna5430|Name=rna5430|organism=Nannochloropsis gaditana|type=mRNA|length=415bp|location=Sequence derived from alignment at CM002465.1:981210..981624+ (Nannochloropsis gaditana)
ATGAACCCTGTAGAGCATCCTCACGGCGGCGGGAACCACCAGCACATCGG
GCACCCGTCCACCGTCAAACGCGACGCGCCCGCCGGGAAGAAAGTGGGTC
TGGTGGCGGCCCGACGCACTGGGCGTTTGCGGGGCATTAAGAAGAACGCG
GAGAAGGACCAGTAAGCTTctagaagggagggaacgagcgtcaggaagat
gggaggcggggaggacgtggagggggtaacgtcgagaggaagggagggat
gggggctGGAATGAGAGCGGCCCAgtggggatggagaagagcaCAGCCAA
GAGGCGGTCGTGGCTGTCTATGCTTGaacggaaagaagaaaaaaccACCC
GTGGGACGTACTCGTTTTGctgcggggagggtggggggggtcACCTCGTT
GTGTGGAGGGTatag
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Coding sequence (CDS) from alignment at CM002465.1:981210..981624+

>rna5430 ID=rna5430|Name=rna5430|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002465.1:981210..981624+ (Nannochloropsis gaditana)
ATGAACCCTGTAGAGCATCCTCACGGCGGCGGGAACCACCAGCACATCGG
GCACCCGTCCACCGTCAAACGCGACGCGCCCGCCGGGAAGAAAGTGGGTC
TGGTGGCGGCCCGACGCACTGGGCGTTTGCGGGGCATTAAGAAGAACGCG
GAGAAGGACCAggatgggggctGGAATGAGAGCGGCCCAgtggggatgga
gaagagcaCAGCCAAGAGGCGGTCGTGGCTGTCTATGCTTGaacggaaag
aagaaaaaaccACCCGTGGGACGTACTCGTTTTGctgcggggagggtggg
gggggtcACCTCGTTGTGTGGAGGGTatagATGAACCCTGTAGAGCATCC
TCACGGCGGCGGGAACCACCAGCACATCGGGCACCCGTCCACCGTCAAAC
GCGACGCGCCCGCCGGGAAGAAAGTGGGTCTGGTGGCGGCCCGACGCACT
GGGCGTTTGCGGGGCATTAAGAAGAACGCGGAGAAGGACCAggatggggg
ctGGAATGAGAGCGGCCCAgtggggatggagaagagcaCAGCCAAGAGGC
GGTCGTGGCTGTCTATGCTTGaacggaaagaagaaaaaaccACCCGTGGG
ACGTACTCGTTTTGctgcggggagggtggggggggtcACCTCGTTGTGTG
GAGGGTatag
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Synonyms
Publications