EWM25256.1, cds5417 (CDS) Nannochloropsis gaditana

Overview
NameEWM25256.1
Unique Namecds5417
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:981210..981370 +
Alignment locationCM002465.1:981456..981624 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25256.1
Productribosomal protein l8
Orig transcript idgnl|cribi|Naga_101784g2.9725.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:981210..981370 +
CM002465.1supercontigCM002465.1:981456..981624 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR002171Ribosomal_L2
IPR022669Ribosomal_L2_C
IPR014726Ribosomal_L2_dom3
Homology
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|585106963|gb|EWM25256.1| (ribosomal protein l8 [Nannochloropsis gaditana])

HSP 1 Score: 223.016 bits (567), Expect = 7.155e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQDGGWNESGPVGMEKSTAKRRSWLSMLERKEEKTTRGTYSFCCGEGGGGHLVVWRV 109
            MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQDGGWNESGPVGMEKSTAKRRSWLSMLERKEEKTTRGTYSFCCGEGGGGHLVVWRV
Sbjct:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQDGGWNESGPVGMEKSTAKRRSWLSMLERKEEKTTRGTYSFCCGEGGGGHLVVWRV 109
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|1214710520|gb|OWZ21602.1| (60S ribosomal protein [Phytophthora megakarya])

HSP 1 Score: 101.679 bits (252), Expect = 3.126e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|673024660|ref|XP_008866291.1| (60S ribosomal protein L8 [Aphanomyces invadans] >gi|574477857|gb|ETW04853.1| 60S ribosomal protein L8 [Aphanomyces invadans])

HSP 1 Score: 101.679 bits (252), Expect = 3.159e-24
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKD 53
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  + D
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKKTEKDD 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|695446714|ref|XP_009534555.1| (hypothetical protein PHYSODRAFT_338451 [Phytophthora sojae] >gi|348669872|gb|EGZ09694.1| hypothetical protein PHYSODRAFT_338451 [Phytophthora sojae])

HSP 1 Score: 101.679 bits (252), Expect = 3.262e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|301113256|ref|XP_002998398.1| (60S ribosomal protein L8, putative [Phytophthora infestans T30-4] >gi|262111699|gb|EEY69751.1| 60S ribosomal protein L8, putative [Phytophthora infestans T30-4])

HSP 1 Score: 101.679 bits (252), Expect = 3.478e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|953493652|emb|CEG44286.1| (60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 101.679 bits (252), Expect = 3.591e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|675200905|ref|XP_008909337.1| (60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|566017884|gb|ETI40795.1| 60S ribosomal protein [Phytophthora parasitica P1569] >gi|567955274|gb|ETK80907.1| 60S ribosomal protein [Phytophthora parasitica] >gi|567983940|gb|ETL34322.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568013422|gb|ETL87599.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568043549|gb|ETM40832.1| 60S ribosomal protein [Phytophthora parasitica] >gi|568090529|gb|ETN05362.1| 60S ribosomal protein [Phytophthora parasitica INRA-310] >gi|570321548|gb|ETO69496.1| 60S ribosomal protein [Phytophthora parasitica P1976] >gi|570945314|gb|ETP10571.1| 60S ribosomal protein [Phytophthora parasitica CJ01A1] >gi|570977041|gb|ETP38738.1| 60S ribosomal protein [Phytophthora parasitica P10297] >gi|970652221|gb|KUF90924.1| 60S ribosomal protein L8 [Phytophthora nicotianae])

HSP 1 Score: 101.679 bits (252), Expect = 3.630e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|698780677|ref|XP_009823382.1| (60S ribosomal protein L8 [Aphanomyces astaci] >gi|574121106|gb|ETV86583.1| 60S ribosomal protein L8 [Aphanomyces astaci])

HSP 1 Score: 100.908 bits (250), Expect = 5.563e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGL+AARRTGRLRGIKK  +KD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLIAARRTGRLRGIKKT-DKDN 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|1173947033|gb|OQR95462.1| (60S ribosomal protein L8 [Thraustotheca clavata])

HSP 1 Score: 100.908 bits (250), Expect = 5.622e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-LEKDD 256
[Close]
BLAST of EWM25256.1 vs. NCBI_GenBank
Match: gi|1173931343|gb|OQR83799.1| (60S ribosomal protein L8 [Achlya hypogyna])

HSP 1 Score: 100.908 bits (250), Expect = 5.622e-24
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAEKDQ 54
            MNPVEHPHGGGNHQHIGHPSTV+RDAPAGKKVGL+AARRTGRLRGIKK  EKD 
Sbjct:  204 MNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-LEKDN 256
The following BLAST results are available for this feature:
BLAST of EWM25256.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106963|gb|EWM25256.1|7.155e-74100.00ribosomal protein l8 [Nannochloropsis gaditana][more]
gi|1214710520|gb|OWZ21602.1|3.126e-2490.7460S ribosomal protein [Phytophthora megakarya][more]
gi|673024660|ref|XP_008866291.1|3.159e-2488.6860S ribosomal protein L8 [Aphanomyces invadans] >g... [more]
gi|695446714|ref|XP_009534555.1|3.262e-2490.74hypothetical protein PHYSODRAFT_338451 [Phytophtho... [more]
gi|301113256|ref|XP_002998398.1|3.478e-2490.7460S ribosomal protein L8, putative [Phytophthora i... [more]
gi|953493652|emb|CEG44286.1|3.591e-2490.7460s ribosomal protein [Plasmopara halstedii][more]
gi|675200905|ref|XP_008909337.1|3.630e-2490.7460S ribosomal protein [Phytophthora parasitica INR... [more]
gi|698780677|ref|XP_009823382.1|5.563e-2490.7460S ribosomal protein L8 [Aphanomyces astaci] >gi|... [more]
gi|1173947033|gb|OQR95462.1|5.622e-2490.7460S ribosomal protein L8 [Thraustotheca clavata][more]
gi|1173931343|gb|OQR83799.1|5.622e-2490.7460S ribosomal protein L8 [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5430rna5430Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications