rna5429, rna5429 (mRNA) Nannochloropsis gaditana

Overview
Namerna5429
Unique Namerna5429
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length454
Alignment locationCM002465.1:980679..981014 +

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Properties
Property NameValue
Product60s ribosomal protein
Orig transcript idgnl|cribi|Naga_103446g1.6938.mrna
Orig protein idgnl|cribi|Naga_103446g1.6938
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:980679..981014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103446g1gene5249Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5429rna5429-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25257.1cds5416Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5429 ID=rna5429|Name=rna5429|organism=Nannochloropsis gaditana|type=mRNA|length=454bp
GACTGATACATGTCATGGGTCTCGGGATTCATAGATGATGTGGCATATGA
ATGTGGATAGCCATCTGTTTGTGTCGAGTGTGGAGAAGGGTGGCATCGTG
GTTGCTGGTGGGGTTATTACGTTCAGACGCTCATCATGAGGGCTCCGCAA
ACGAAGCCTATTGTTGTGTTGTCATTGTCACTTCTCATCACGCTGGGCGC
GCACTAACACTCATGCATACGCCACACAGGACTTCTTCTTGTTCTCTCGG
CTCGACTTTCGATGGGGAAGGTCATTCGAACCTGCCGAAAGGGCGTGGGG
GGCATCTTCAAGTCCCACACCAAACTGAACAAGAACCCTGTCAAGCTTCG
CAAGCTGGACTATGCAGAGAAGCACGGGTAGGACGGAAGGAGGGACAGAG
GGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGGAAGGAGG
AAGC
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protein sequence of rna5429

>rna5429-protein ID=rna5429-protein|Name=rna5429|organism=Nannochloropsis gaditana|type=polypeptide|length=90bp
MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTR
EGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA
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mRNA from alignment at CM002465.1:980679..981014+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5429 ID=rna5429|Name=rna5429|organism=Nannochloropsis gaditana|type=mRNA|length=336bp|location=Sequence derived from alignment at CM002465.1:980679..981014+ (Nannochloropsis gaditana)
ATGTCGTGACATtatcccctcttcccctcccctcctccctccctcctgcc
tgtcGCCGCTTTGCAAAGGTACATCAAGGGCGTCGTGAAGGAGATCGTCC
ACGAATCCGGTCGAGGGGCGCCTATTGCCCGCGTCCAGTTCAAGAATGCC
TACAGGTTCAAGCGGGACACGGAGAGTTTTGTGGCCGTGGAGGGAATCTA
CTCAGgtacgagggagggagggagggaggggggagggaggggaggaggag
gaaaacggcAGCATGTGGGAAGACTAGGGATGGAAGTGAGAAACCGAAGT
ATCCAAGATTGTGCAGATTTCGAAGCCGGTGCATGA
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Coding sequence (CDS) from alignment at CM002465.1:980679..981014+

>rna5429 ID=rna5429|Name=rna5429|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002465.1:980679..981014+ (Nannochloropsis gaditana)
ATGTCGTACATCAAGGGCGTCGTGAAGGAGATCGTCCACGAATCCGGTCG
AGGGGCGCCTATTGCCCGCGTCCAGTTCAAGAATGCCTACAGGTTCAAGC
GGGACACGGAGAGTTTTGTGGCCGTGGAGGGAATCTACTCAGgtacgagg
gagggagggagggaggggggagggaggggaggaggaggaaaacggcAGCA
TGTGGGAAGACTAGGGATGGAAGTGAGAAACCGAAGTATCCAAGATTGTG
CAGATTTCGAAGCCGGTGCATGAATGTCGTACATCAAGGGCGTCGTGAAG
GAGATCGTCCACGAATCCGGTCGAGGGGCGCCTATTGCCCGCGTCCAGTT
CAAGAATGCCTACAGGTTCAAGCGGGACACGGAGAGTTTTGTGGCCGTGG
AGGGAATCTACTCAGgtacgagggagggagggagggaggggggagggagg
ggaggaggaggaaaacggcAGCATGTGGGAAGACTAGGGATGGAAGTGAG
AAACCGAAGTATCCAAGATTGTGCAGATTTCGAAGCCGGTGCATGA
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Synonyms
Publications