EWM25257.1, cds5416 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|585106965|gb|EWM25257.1| (60s ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 178.718 bits (452), Expect = 8.374e-57 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 Query: 1 MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA 90 MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA Sbjct: 1 MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA 90
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|909986793|gb|KNG44440.1| (60s ribosomal protein l2 [Stemphylium lycopersici]) HSP 1 Score: 79.7221 bits (195), Expect = 4.724e-16 Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGR 54 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G R R Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHNTETFIANEGMYTGQRWNDR 91
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|452002508|gb|EMD94966.1| (hypothetical protein COCHEDRAFT_1092909, partial [Bipolaris maydis C5]) HSP 1 Score: 79.337 bits (194), Expect = 5.908e-16 Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK DTE+F+A EG+Y+G Sbjct: 48 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHDTETFIANEGMYTG 93
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|627831066|ref|XP_007686815.1| (hypothetical protein COCMIDRAFT_4310 [Bipolaris oryzae ATCC 44560] >gi|628065309|ref|XP_007697777.1| hypothetical protein COCSADRAFT_296249 [Bipolaris sorokiniana ND90Pr] >gi|628181708|ref|XP_007706491.1| hypothetical protein COCCADRAFT_311 [Bipolaris zeicola 26-R-13] >gi|928513710|ref|XP_014075652.1| hypothetical protein COCC4DRAFT_83585 [Bipolaris maydis ATCC 48331] >gi|953422715|ref|XP_014553429.1| hypothetical protein COCVIDRAFT_29376 [Bipolaris victoriae FI3] >gi|451852943|gb|EMD66237.1| hypothetical protein COCSADRAFT_296249 [Bipolaris sorokiniana ND90Pr] >gi|477584652|gb|ENI01743.1| hypothetical protein COCC4DRAFT_83585 [Bipolaris maydis ATCC 48331] >gi|576925117|gb|EUC39223.1| hypothetical protein COCCADRAFT_311 [Bipolaris zeicola 26-R-13] >gi|576933125|gb|EUC46656.1| hypothetical protein COCMIDRAFT_4310 [Bipolaris oryzae ATCC 44560] >gi|578486376|gb|EUN23852.1| hypothetical protein COCVIDRAFT_29376 [Bipolaris victoriae FI3]) HSP 1 Score: 79.337 bits (194), Expect = 6.105e-16 Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK DTE+F+A EG+Y+G Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHDTETFIANEGMYTG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|676391487|ref|XP_009039021.1| (hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens] >gi|323450569|gb|EGB06450.1| hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens]) HSP 1 Score: 78.9518 bits (193), Expect = 7.782e-16 Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 Y+KGVVK IVHESGRGAPIA+VQF+N+YRF+RD E FVA EG+Y G Sbjct: 40 YVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1020704461|gb|KZM24717.1| (structural constituent of ribosome [Ascochyta rabiei]) HSP 1 Score: 78.5666 bits (192), Expect = 1.146e-15 Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N YRFK +TE+F+A EG+Y+G Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVTFRNPYRFKHNTETFIANEGMYTG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|298715558|emb|CBJ28111.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.7962 bits (190), Expect = 2.020e-15 Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YIKGVVK+++HE GRGAP+A+VQF+N Y+FKRD E VAVEG+YSG Sbjct: 40 YIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|636592793|ref|XP_008027735.1| (hypothetical protein SETTUDRAFT_163975 [Setosphaeria turcica Et28A] >gi|482808378|gb|EOA85311.1| hypothetical protein SETTUDRAFT_163975 [Setosphaeria turcica Et28A]) HSP 1 Score: 77.411 bits (189), Expect = 2.767e-15 Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHNTETFIANEGMYTG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1070555186|ref|XP_018383850.1| (ribosomal protein L2 [Alternaria alternata] >gi|1027158048|gb|OAG18429.1| ribosomal protein L2 [Alternaria alternata] >gi|1213703134|gb|OWY42326.1| ribosomal protein L2 [Alternaria alternata]) HSP 1 Score: 77.411 bits (189), Expect = 2.825e-15 Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVTFRNPYKFKHNTETFIANEGMYTG 85
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1029191832|gb|OAL56390.1| (ribosomal protein L2 [Pyrenochaeta sp. DS3sAY3a]) HSP 1 Score: 77.0258 bits (188), Expect = 3.341e-15 Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0 Query: 3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48 YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G Sbjct: 40 YIRGVVKEIVHDSGRGAPLARVTFRNPYKFKHNTETFIANEGMYTG 85 The following BLAST results are available for this feature:
BLAST of EWM25257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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