EWM25257.1, cds5416 (CDS) Nannochloropsis gaditana

Overview
NameEWM25257.1
Unique Namecds5416
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:980679..980683 +
Alignment locationCM002465.1:980747..981014 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25257.1
Product60s ribosomal protein
Orig transcript idgnl|cribi|Naga_103446g1.6938.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:980679..980683 +
CM002465.1supercontigCM002465.1:980747..981014 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|585106965|gb|EWM25257.1| (60s ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 178.718 bits (452), Expect = 8.374e-57
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query:    1 MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA 90
            MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA
Sbjct:    1 MSYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGREGGGRGGGGKRQHVGRLGMEVRNRSIQDCADFEAGA 90          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|909986793|gb|KNG44440.1| (60s ribosomal protein l2 [Stemphylium lycopersici])

HSP 1 Score: 79.7221 bits (195), Expect = 4.724e-16
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGTREGGR 54
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G R   R
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHNTETFIANEGMYTGQRWNDR 91          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|452002508|gb|EMD94966.1| (hypothetical protein COCHEDRAFT_1092909, partial [Bipolaris maydis C5])

HSP 1 Score: 79.337 bits (194), Expect = 5.908e-16
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK DTE+F+A EG+Y+G
Sbjct:   48 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHDTETFIANEGMYTG 93          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|627831066|ref|XP_007686815.1| (hypothetical protein COCMIDRAFT_4310 [Bipolaris oryzae ATCC 44560] >gi|628065309|ref|XP_007697777.1| hypothetical protein COCSADRAFT_296249 [Bipolaris sorokiniana ND90Pr] >gi|628181708|ref|XP_007706491.1| hypothetical protein COCCADRAFT_311 [Bipolaris zeicola 26-R-13] >gi|928513710|ref|XP_014075652.1| hypothetical protein COCC4DRAFT_83585 [Bipolaris maydis ATCC 48331] >gi|953422715|ref|XP_014553429.1| hypothetical protein COCVIDRAFT_29376 [Bipolaris victoriae FI3] >gi|451852943|gb|EMD66237.1| hypothetical protein COCSADRAFT_296249 [Bipolaris sorokiniana ND90Pr] >gi|477584652|gb|ENI01743.1| hypothetical protein COCC4DRAFT_83585 [Bipolaris maydis ATCC 48331] >gi|576925117|gb|EUC39223.1| hypothetical protein COCCADRAFT_311 [Bipolaris zeicola 26-R-13] >gi|576933125|gb|EUC46656.1| hypothetical protein COCMIDRAFT_4310 [Bipolaris oryzae ATCC 44560] >gi|578486376|gb|EUN23852.1| hypothetical protein COCVIDRAFT_29376 [Bipolaris victoriae FI3])

HSP 1 Score: 79.337 bits (194), Expect = 6.105e-16
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK DTE+F+A EG+Y+G
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHDTETFIANEGMYTG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|676391487|ref|XP_009039021.1| (hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens] >gi|323450569|gb|EGB06450.1| hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens])

HSP 1 Score: 78.9518 bits (193), Expect = 7.782e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            Y+KGVVK IVHESGRGAPIA+VQF+N+YRF+RD E FVA EG+Y G
Sbjct:   40 YVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1020704461|gb|KZM24717.1| (structural constituent of ribosome [Ascochyta rabiei])

HSP 1 Score: 78.5666 bits (192), Expect = 1.146e-15
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N YRFK +TE+F+A EG+Y+G
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVTFRNPYRFKHNTETFIANEGMYTG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|298715558|emb|CBJ28111.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 2.020e-15
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YIKGVVK+++HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSG
Sbjct:   40 YIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|636592793|ref|XP_008027735.1| (hypothetical protein SETTUDRAFT_163975 [Setosphaeria turcica Et28A] >gi|482808378|gb|EOA85311.1| hypothetical protein SETTUDRAFT_163975 [Setosphaeria turcica Et28A])

HSP 1 Score: 77.411 bits (189), Expect = 2.767e-15
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVSFRNPYKFKHNTETFIANEGMYTG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1070555186|ref|XP_018383850.1| (ribosomal protein L2 [Alternaria alternata] >gi|1027158048|gb|OAG18429.1| ribosomal protein L2 [Alternaria alternata] >gi|1213703134|gb|OWY42326.1| ribosomal protein L2 [Alternaria alternata])

HSP 1 Score: 77.411 bits (189), Expect = 2.825e-15
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVTFRNPYKFKHNTETFIANEGMYTG 85          
BLAST of EWM25257.1 vs. NCBI_GenBank
Match: gi|1029191832|gb|OAL56390.1| (ribosomal protein L2 [Pyrenochaeta sp. DS3sAY3a])

HSP 1 Score: 77.0258 bits (188), Expect = 3.341e-15
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 0
Query:    3 YIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSG 48
            YI+GVVKEIVH+SGRGAP+ARV F+N Y+FK +TE+F+A EG+Y+G
Sbjct:   40 YIRGVVKEIVHDSGRGAPLARVTFRNPYKFKHNTETFIANEGMYTG 85          
The following BLAST results are available for this feature:
BLAST of EWM25257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106965|gb|EWM25257.1|8.374e-57100.0060s ribosomal protein [Nannochloropsis gaditana][more]
gi|909986793|gb|KNG44440.1|4.724e-1665.3860s ribosomal protein l2 [Stemphylium lycopersici][more]
gi|452002508|gb|EMD94966.1|5.908e-1671.74hypothetical protein COCHEDRAFT_1092909, partial [... [more]
gi|627831066|ref|XP_007686815.1|6.105e-1671.74hypothetical protein COCMIDRAFT_4310 [Bipolaris or... [more]
gi|676391487|ref|XP_009039021.1|7.782e-1676.09hypothetical protein AURANDRAFT_54227 [Aureococcus... [more]
gi|1020704461|gb|KZM24717.1|1.146e-1571.74structural constituent of ribosome [Ascochyta rabi... [more]
gi|298715558|emb|CBJ28111.1|2.020e-1571.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|636592793|ref|XP_008027735.1|2.767e-1569.57hypothetical protein SETTUDRAFT_163975 [Setosphaer... [more]
gi|1070555186|ref|XP_018383850.1|2.825e-1569.57ribosomal protein L2 [Alternaria alternata] >gi|10... [more]
gi|1029191832|gb|OAL56390.1|3.341e-1569.57ribosomal protein L2 [Pyrenochaeta sp. DS3sAY3a][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5429rna5429Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications