rna5426, rna5426 (mRNA) Nannochloropsis gaditana

Overview
Namerna5426
Unique Namerna5426
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length574
Alignment locationCM002465.1:974029..975422 +

Link to JBrowse

Properties
Property NameValue
Productconserved oligomeric golgi complex subunit 7
Orig transcript idgnl|cribi|Naga_101408g3.7217.mrna
Orig protein idgnl|cribi|Naga_101408g3.7217
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:974029..975422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101408g3gene5246Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5426rna5426-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25260.1cds5413Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5426 ID=rna5426|Name=rna5426|organism=Nannochloropsis gaditana|type=mRNA|length=574bp
TCCCTCCCTCCTTCCCGAGTCTCAGATCCCTGACCTTGAGGGTCAAGGCT
CGGCTTCGTCCAAGATGGAAACAACACCGCTCCGCATGAACCCCAGCACC
GGGAGTGAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGAGTGGCGGGGAAA
TCGAGGGGTGGATGCCGCGAATGGCTGGCTGGCAGTATGTGAGGATGAAG
AGGGAGGCAATGGCAAGAAGGACAGGACCGTGGAGGAGGGGAGGGAGGGC
GAGGAGGAGGAGATGCACCTCTGTTGAGGTGAAGAGGGAGGGACAGAGGG
AGGGAGGCAGGAGTGTTTTCGACGAATACGTCGCGGAGCACAGCAAGGAA
GAGTCAGTGATCTTCTTCGATAAAGTGCATTTGTCCAACTCCCCATTTAG
AAAATCAATGTACATCCATGCGAACGGTACGACCTCCCAGACATGCAAGT
CCACCCTTCACAGCCGCCCATGTCAAAGTAGAATGCAGCAACACTGCATT
CGCCAGAACGAATAAGAGCGCCGCTGGCGTCTACGTGGTTCCACGGGCCC
TCCCTTGTTGGCCTGAGCCTTGCC
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protein sequence of rna5426

>rna5426-protein ID=rna5426-protein|Name=rna5426|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELN
GELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGE
AGGRRGGGRRPRADLGAVTQGEAQHVSMPGHAHGGGALATRRPRGHGALR
RGRLGAGEG
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mRNA from alignment at CM002465.1:974029..975422+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5426 ID=rna5426|Name=rna5426|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp|location=Sequence derived from alignment at CM002465.1:974029..975422+ (Nannochloropsis gaditana)
TTGGTACAGGCATTGGGGAGTTCGTCCGACTGGACTTGCCACGCTTCCCA
TGGAccttgctcccttctcccAGCATACATTCGACGCACGGGCATGGGTG
GAGAGCATTTTGACACCCGAAAAACGCGACGGTACGTGGGGGACATGGCC
GAAGGCCTGCCACAGGTATGGAGAGTAAGCGTAAGGATGGCTTGCATAAA
TTGACTTGCCCCTTCCGGGCTTCCCTTTTTGTCCGGACAGGGGAGACGCT
TGATGCCTATGTGTCCGCCGTGTCCATGCAGTTGCAGCTCCTCGCCCAAG
AATTGAACGGGGAGCTCGAACGGGGTGAGACGCGAGGGACTCACGGAGGG
ATATGTCGAGGCGCATGGAAGtaggaagagaaaaaaaagagggaggttgC
CAAAGTCAACCTCCATTGCCCCACGccgacccctccttcgcgcttATCAC
GCCCACGCACAcctttccttgtccacccGAAGGCATGATGGAGCTGACAG
GATCGCTCCCCCGGGCCATGACCGAGCTCTGTCTTTTGGAAACGTCGGGG
AGGTCGTTGGAGCAGGAGCTTGGCCACGTGCTCGCTCAGGtaaagagagg
aggaggaggaggattagGCGGAGGAttaggagagggagaaggaggaggat
agggaggagaagaagggataTTGGTGGTGTtgatgagggaaggagggaaa
gagggaggggagggcgaggaagaggaaggaagaaagcaggaaggcgagga
ggagaggagagggaggaagaggaaggaaggaagcaggaaggcgaggagaa
gaggagagggaggaggaggaagaggaggaggaggccgaggagggagaata
AAGTGGTGTGACCCAGGCAATGGGCCGCCACATGCACGTGAAAGCTAATG
CAAGGCAATGGGAACACCCGCCACATCCACGTGAAAGACTGATGCAAGGC
AATGGGAACACCCGCCACATCCACGTGAAAGACTGACGCCATTCTTATCC
CTCGGTCGTACAGGCAGTCAAGGCGCAggacagaggggaggcggggggga
ggaggggcggaggacgaagacccCGTGCAGATCTTGGCGCAGTTACACAA
GGTGTGTGGTCtagtcctccttccctccctccttccctccctccattcct
ctctcattccctctgtccctccgtccctccttcctcgcctgctcACGTCT
GCCTGAACCCTgcctgacctccctccctgctcctcccatctCCCACGCCC
ACACGTGCCACGTCCATGGCATATCAGGTGAAGCTCAACATGTCTCAATG
CCGGGACACGCTCATGGAGGCGGTGCATTGGCAACGCGCCGTCCGAGAGG
TCACGGAGCGCTTCGCCGAGGGCGCCTTGGGGCAGGTGAGGGGA
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Coding sequence (CDS) from alignment at CM002465.1:974029..975422+

>rna5426 ID=rna5426|Name=rna5426|organism=Nannochloropsis gaditana|type=CDS|length=2390bp|location=Sequence derived from alignment at CM002465.1:974029..975422+ (Nannochloropsis gaditana)
ATGGAccttgctcccttctcccAGCATACATTCGACGCACGGGCATGGGT
GGAGAGCATTTTGACACCCGAAAAACGCGACGGGGAGACGCTTGATGCCT
ATGTGTCCGCCGTGTCCATGCAGTTGCAGCTCCTCGCCCAAGAATTGAAC
GGGGAGCTCGAACGGGGCATGATGGAGCTGACAGGATCGCTCCCCCGGGC
CATGACCGAGCTCTGTCTTTTGGAAACGTCGGGGAGGTCGTTGGAGCAGG
AGCTTGGCCACGTGCTCGCTCAGGCAGTCAAGGCGCAggacagaggggag
gcgggggggaggaggggcggaggacgaagacccCGTGCAGATCTTGGCGC
AGTTACACAAGGTGAAGCTCAACATGTCTCAATGCCGGGACACGCTCATG
GAGGCGGTGCATTGGCAACGCGCCGTCCGAGAGGTCACGGAGCGCTTCGC
CGAGGGCGCCTTGGGGCAGGTGAGGGGAATGGAccttgctcccttctccc
AGCATACATTCGACGCACGGGCATGGGTGGAGAGCATTTTGACACCCGAA
AAACGCGACGGGGAGACGCTTGATGCCTATGTGTCCGCCGTGTCCATGCA
GTTGCAGCTCCTCGCCCAAGAATTGAACGGGGAGCTCGAACGGGGCATGA
TGGAGCTGACAGGATCGCTCCCCCGGGCCATGACCGAGCTCTGTCTTTTG
GAAACGTCGGGGAGGTCGTTGGAGCAGGAGCTTGGCCACGTGCTCGCTCA
GGCAGTCAAGGCGCAggacagaggggaggcgggggggaggaggggcggag
gacgaagacccCGTGCAGATCTTGGCGCAGTTACACAAGGTGAAGCTCAA
CATGTCTCAATGCCGGGACACGCTCATGGAGGCGGTGCATTGGCAACGCG
CCGTCCGAGAGGTCACGGAGCGCTTCGCCGAGGGCGCCTTGGGGCAGGTG
AGGGGAATGGAccttgctcccttctcccAGCATACATTCGACGCACGGGC
ATGGGTGGAGAGCATTTTGACACCCGAAAAACGCGACGGGGAGACGCTTG
ATGCCTATGTGTCCGCCGTGTCCATGCAGTTGCAGCTCCTCGCCCAAGAA
TTGAACGGGGAGCTCGAACGGGGCATGATGGAGCTGACAGGATCGCTCCC
CCGGGCCATGACCGAGCTCTGTCTTTTGGAAACGTCGGGGAGGTCGTTGG
AGCAGGAGCTTGGCCACGTGCTCGCTCAGGCAGTCAAGGCGCAggacaga
ggggaggcgggggggaggaggggcggaggacgaagacccCGTGCAGATCT
TGGCGCAGTTACACAAGGTGAAGCTCAACATGTCTCAATGCCGGGACACG
CTCATGGAGGCGGTGCATTGGCAACGCGCCGTCCGAGAGGTCACGGAGCG
CTTCGCCGAGGGCGCCTTGGGGCAGGTGAGGGGAATGGAccttgctccct
tctcccAGCATACATTCGACGCACGGGCATGGGTGGAGAGCATTTTGACA
CCCGAAAAACGCGACGGGGAGACGCTTGATGCCTATGTGTCCGCCGTGTC
CATGCAGTTGCAGCTCCTCGCCCAAGAATTGAACGGGGAGCTCGAACGGG
GCATGATGGAGCTGACAGGATCGCTCCCCCGGGCCATGACCGAGCTCTGT
CTTTTGGAAACGTCGGGGAGGTCGTTGGAGCAGGAGCTTGGCCACGTGCT
CGCTCAGGCAGTCAAGGCGCAggacagaggggaggcgggggggaggaggg
gcggaggacgaagacccCGTGCAGATCTTGGCGCAGTTACACAAGGTGAA
GCTCAACATGTCTCAATGCCGGGACACGCTCATGGAGGCGGTGCATTGGC
AACGCGCCGTCCGAGAGGTCACGGAGCGCTTCGCCGAGGGCGCCTTGGGG
CAGGTGAGGGGAATGGAccttgctcccttctcccAGCATACATTCGACGC
ACGGGCATGGGTGGAGAGCATTTTGACACCCGAAAAACGCGACGGGGAGA
CGCTTGATGCCTATGTGTCCGCCGTGTCCATGCAGTTGCAGCTCCTCGCC
CAAGAATTGAACGGGGAGCTCGAACGGGGCATGATGGAGCTGACAGGATC
GCTCCCCCGGGCCATGACCGAGCTCTGTCTTTTGGAAACGTCGGGGAGGT
CGTTGGAGCAGGAGCTTGGCCACGTGCTCGCTCAGGCAGTCAAGGCGCAg
gacagaggggaggcgggggggaggaggggcggaggacgaagacccCGTGC
AGATCTTGGCGCAGTTACACAAGGTGAAGCTCAACATGTCTCAATGCCGG
GACACGCTCATGGAGGCGGTGCATTGGCAACGCGCCGTCCGAGAGGTCAC
GGAGCGCTTCGCCGAGGGCGCCTTGGGGCAGGTGAGGGGA
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Synonyms
Publications