EWM25260.1, cds5413 (CDS) Nannochloropsis gaditana

Overview
NameEWM25260.1
Unique Namecds5413
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:974078..974159 +
Alignment locationCM002465.1:974269..974352 +
Alignment locationCM002465.1:974511..974617 +
Alignment locationCM002465.1:975042..975129 +
Alignment locationCM002465.1:975306..975422 +

Link to JBrowse

Properties
Property NameValue
End range.
End range975422
Protein idEWM25260.1
Productconserved oligomeric golgi complex subunit 7
Partialtrue
Orig transcript idgnl|cribi|Naga_101408g3.7217.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:974078..974159 +
CM002465.1supercontigCM002465.1:974269..974352 +
CM002465.1supercontigCM002465.1:974511..974617 +
CM002465.1supercontigCM002465.1:975042..975129 +
CM002465.1supercontigCM002465.1:975306..975422 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0017119Golgi transport complex
Vocabulary: INTERPRO
TermDefinition
IPR019335COG7
Homology
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|585106974|gb|EWM25260.1| (conserved oligomeric golgi complex subunit 7, partial [Nannochloropsis gaditana])

HSP 1 Score: 312.768 bits (800), Expect = 1.033e-107
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGEAGGRRGGGRRPRADLGAVTQGEAQHVSMPGHAHGGGALATRRPRGHGALRRGRLGAGEG 159
            MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGEAGGRRGGGRRPRADLGAVTQGEAQHVSMPGHAHGGGALATRRPRGHGALRRGRLGAGEG
Sbjct:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGEAGGRRGGGRRPRADLGAVTQGEAQHVSMPGHAHGGGALATRRPRGHGALRRGRLGAGEG 159          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|553189839|ref|XP_005855083.1| (conserved oligomeric golgi complex subunit 7 [Nannochloropsis gaditana CCMP526] >gi|422293977|gb|EKU21277.1| conserved oligomeric golgi complex subunit 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 186.422 bits (472), Expect = 2.335e-58
Identity = 97/107 (90.65%), Postives = 97/107 (90.65%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGEAGGRRGG 107
            MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQ      RG  GG  GG
Sbjct:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQV----KRGGGGGLGGG 103          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|972205603|ref|XP_015185032.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 isoform X2 [Polistes dominula])

HSP 1 Score: 65.0846 bits (157), Expect = 2.569e-9
Identity = 31/97 (31.96%), Postives = 55/97 (56.70%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQD 97
            MD++ FS+ TFDA+ W+       +   E  DA+VS++ M+LQL  Q++N  LE     +  SLPR + +  LL+    +L++++  V  +  K ++
Sbjct:    1 MDVSAFSEDTFDAKEWINKTFKSNEAQ-ENKDAFVSSLVMKLQLYVQQVNSALEETSQSVLSSLPRVLRDSQLLQQEALALKEKMASVKQEIAKVEE 96          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|972205601|ref|XP_015185031.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 isoform X1 [Polistes dominula])

HSP 1 Score: 65.0846 bits (157), Expect = 2.570e-9
Identity = 31/97 (31.96%), Postives = 55/97 (56.70%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQD 97
            MD++ FS+ TFDA+ W+       +   E  DA+VS++ M+LQL  Q++N  LE     +  SLPR + +  LL+    +L++++  V  +  K ++
Sbjct:    3 MDVSAFSEDTFDAKEWINKTFKSNEAQ-ENKDAFVSSLVMKLQLYVQQVNSALEETSQSVLSSLPRVLRDSQLLQQEALALKEKMASVKQEIAKVEE 98          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|954563937|ref|XP_014605853.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 isoform X1 [Polistes canadensis])

HSP 1 Score: 65.0846 bits (157), Expect = 2.570e-9
Identity = 31/97 (31.96%), Postives = 55/97 (56.70%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQD 97
            MD++ FS+ TFDA+ W+       +   E  DA+VS++ M+LQL  Q++N  LE     +  SLPR + +  LL+    +L++++  V  +  K ++
Sbjct:    2 MDVSAFSEDTFDAKEWINKTFKSNEAQ-ENKDAFVSSLVMKLQLYVQQVNSALEETSQSVLSSLPRVLRDSQLLQQEALALKEKMASVKQEIAKVEE 97          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|1059235251|ref|XP_017762611.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 [Eufriesea mexicana])

HSP 1 Score: 63.929 bits (154), Expect = 6.263e-9
Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQ-DRGEAGGRRGGGRRPRADLGAVTQG 121
            MD++ FS+ TFD + W+       +   E  DA+VS++ M+LQL  Q++NG LE     +  SLPR + +  LL+    +L +++  V  +  K + D   +        R + DL    QG
Sbjct:    1 MDVSAFSEDTFDVKGWINKTFKSTEAQ-ENKDAFVSSLVMKLQLYVQQVNGALEETSQSVLSSLPRVLRDTQLLQQEALALREKMVAVKQEIEKVEKDTASSMATLEKIDRIKTDLQTAKQG 121          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|952520197|gb|KRT80646.1| (hypothetical protein AMK59_5913 [Oryctes borbonicus])

HSP 1 Score: 63.5438 bits (153), Expect = 7.876e-9
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESIL-TPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQ-DRGEA 101
            MD+  FS  TFD +AWV  IL +PE +  E  + +  ++ M+LQL  Q++N  LE    E+  SLP+ + +   L+  G+ L++++G V  Q  K + D G++
Sbjct:    1 MDIGAFSDDTFDTKAWVNEILKSPEGQ--EKKEGFTMSLVMKLQLYVQQINAALEETSQEVFVSLPKIIRDTQSLQEEGQLLQRKMGWVKDQITKIEKDTGDS 101          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|805788412|ref|XP_012141178.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 isoform X2 [Megachile rotundata] >gi|805788415|ref|XP_012141179.1| PREDICTED: conserved oligomeric Golgi complex subunit 7 isoform X2 [Megachile rotundata])

HSP 1 Score: 63.1586 bits (152), Expect = 1.204e-8
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQDRGEAGGRRGGGR--RPRADLGAVTQG 121
            MD++ FS+ TFD + W+       +   E  DA+VS++ M+LQL  Q++NG LE     +  SLPR + +  LL+    +L +++  V  Q ++  ++  A       R  + + DL A  QG
Sbjct:    1 MDVSAFSEDTFDVKDWINKTFKSAEAQ-ENKDAFVSSLVMKLQLYVQQVNGALEETSQSVLSSLPRVLRDTQLLQQEAIALSEKMVAV-KQEIEKVEKDTASSMATLERIDKIKTDLQAAKQG 121          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|1153811803|ref|XP_020281658.1| (conserved oligomeric Golgi complex subunit 7 isoform X1 [Pseudomyrmex gracilis])

HSP 1 Score: 62.3882 bits (150), Expect = 2.163e-8
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQELGHVLAQAVKAQ 96
            MD++ FS+ TFD + W+       +   E  DA+VS++ M+LQL  Q++NG LE     +  SLPR + +  LL+    +L +++  V  +  K +
Sbjct:    1 MDVSAFSEETFDVKEWINRTFKSAEAQ-ENKDAFVSSLVMKLQLYVQQVNGALEETSQSVLSSLPRILRDTQLLQQETLALREKMVSVKQEIAKVE 95          
BLAST of EWM25260.1 vs. NCBI_GenBank
Match: gi|1059860460|ref|XP_017793947.1| (PREDICTED: conserved oligomeric Golgi complex subunit 7 [Habropoda laboriosa])

HSP 1 Score: 62.003 bits (149), Expect = 2.940e-8
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 0
Query:    1 MDLAPFSQHTFDARAWVESILTPEKRDGETLDAYVSAVSMQLQLLAQELNGELERGMMELTGSLPRAMTELCLLETSGRSLEQEL 85
            MD++ FS+ TFD + W+       +   E  DA+VS++ M+LQL  Q++NG LE     +  SLPR + +  LL+    +L +++
Sbjct:    1 MDVSAFSEDTFDVKDWINKTFKSTEAQ-ENKDAFVSSLVMKLQLYVQQVNGALEETSQSVLSSLPRVLRDTQLLQQEALALREKM 84          
The following BLAST results are available for this feature:
BLAST of EWM25260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106974|gb|EWM25260.1|1.033e-107100.00conserved oligomeric golgi complex subunit 7, part... [more]
gi|553189839|ref|XP_005855083.1|2.335e-5890.65conserved oligomeric golgi complex subunit 7 [Nann... [more]
gi|972205603|ref|XP_015185032.1|2.569e-931.96PREDICTED: conserved oligomeric Golgi complex subu... [more]
gi|972205601|ref|XP_015185031.1|2.570e-931.96PREDICTED: conserved oligomeric Golgi complex subu... [more]
gi|954563937|ref|XP_014605853.1|2.570e-931.96PREDICTED: conserved oligomeric Golgi complex subu... [more]
gi|1059235251|ref|XP_017762611.1|6.263e-930.33PREDICTED: conserved oligomeric Golgi complex subu... [more]
gi|952520197|gb|KRT80646.1|7.876e-934.95hypothetical protein AMK59_5913 [Oryctes borbonicu... [more]
gi|805788412|ref|XP_012141178.1|1.204e-830.89PREDICTED: conserved oligomeric Golgi complex subu... [more]
gi|1153811803|ref|XP_020281658.1|2.163e-832.29conserved oligomeric Golgi complex subunit 7 isofo... [more]
gi|1059860460|ref|XP_017793947.1|2.940e-834.12PREDICTED: conserved oligomeric Golgi complex subu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5426rna5426Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications