rna5422, rna5422 (mRNA) Nannochloropsis gaditana

Overview
Namerna5422
Unique Namerna5422
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length564
Alignment locationCM002465.1:963757..964715 +

Link to JBrowse

Properties
Property NameValue
Productvacuolar sorting atpase
Orig transcript idgnl|cribi|Naga_101559g1.6922.mrna
Orig protein idgnl|cribi|Naga_101559g1.6922
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:963757..964715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101559g1gene5242Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5422rna5422-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25264.1cds5409Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5422 ID=rna5422|Name=rna5422|organism=Nannochloropsis gaditana|type=mRNA|length=564bp
ATGGCCTCGAGCAACTTCATCACGCAGGCCATTGAGATTGTGAAGCAAGC
GATCGACGCCGACCAAAAGGGAGAATATGAAAACGCATTGGGTTACTACA
AGAAAAGCCTTGACTACTTTATGGCAGGATTGAAGTACGAAAAAAAATCC
GGCCACGAAGGCAACGATACAAGCCCGGGTAGAAGGCTACATGAAGCGCG
CCGAAGACTTGAAGGAGCCCAATGTCCGGTGGGAGGACGTGGCCGGTTTG
GAGGCCGCCAAGGAGGCCTTGAAGGAGGCGGTGATCCTCCCCGTCAGATT
TCCCCAGCTCTTCGTCGGGAAACGCAAGCCCTGGAGAGGCATCCTACTCT
ACGGCCCGCCCGGGACAGGAAAGTCGTTTTTAGCCAAGGCCGTCGCCACC
GAGGCCGACTGCAAATTCTTCTCTGTCTCTTCCTCCGACCTAGTCAGCAA
GTGGCAGGGCGAGAGCGAGCGCTTGGTGCGTTCGCTCTTCGAGATGGCTC
GGGAGGAGGGCCGGGCCATCATATTCATCGACGAAGTGGACTCGTTGTGC
GGGCAGCGGACTGA
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protein sequence of rna5422

>rna5422-protein ID=rna5422-protein|Name=rna5422|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGE
KQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEE
LDHFTEWTTEFGQEG
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mRNA from alignment at CM002465.1:963757..964715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5422 ID=rna5422|Name=rna5422|organism=Nannochloropsis gaditana|type=mRNA|length=959bp|location=Sequence derived from alignment at CM002465.1:963757..964715+ (Nannochloropsis gaditana)
caggcgCGGATATCTCCATCTGCGTGAGGGAGGCCCTTATGGAGCCGTTG
CGGAAGTGCAAGCAGGCTAAGTACTTTGTGACCAATGCCCAAGGTAGAAG
GAGGGTAtaagcgagggagggagggagggtgggtgaGAAATTCACCCGAA
GTCCTCGTCATGTCGTAACGGAAAcacttccaccccctccctccctccct
ccctccctccctccctccctcccgcccgcccgcccgcagGCATGCTCACT
CCCTACCACagtgggacgggggaggaccCGAacgtccctccttgtccccg
ctGTCCCATGGTGTTGCTCaccgaaggcggggagaaaCAGGGCCCGTTGA
CGTGCCAGAGTTGCGGGGCGGTCCGGGGAGGGCTATACGAAATCGAGTCG
GAGAGACTGCTGgtgagcagggagggaaagaggggatgCTTTCTTCGGGG
TTGGCGTCGTTTGCATTTTTGGTGCTCGGCGCATGCGGCTGCTTTTATGC
CAAAGGTCTTGCTTCTCGTTCGATCCTCTTGCCTTTCcggttccctccct
ccttgtataccccctcttcttcactACGCAGCACTCGCCATCGCCTCTTA
CGTCCGTGTGCATGTCCTCTCTCTATTGTTATTCAATACCCTGATCCAGG
TACCGGACATAGAGTTTGCCGATTTTGAGAAAGCAGCCCAGCGAGCCAAG
CCCTCTGTGGCCCCGGAAGAACTCGATCACTTCACAGAGTGGACGACAGA
ATTTGGACAGGAGGGATGACCTGTTCATTTTATTAGAAAAATAAAAGCAa
tcgagggaaggagggaaaaagagccTTGCTTAATGTCAGGGAGGGCCTGG
CAGGGGGGTGGTATACATATATGAGCATAATGCATGATATCCGGGCGGAA
AGAAGTCAGTGAAATGTTGTGTAAAGTAAAACTCCAAACAAAACGATCAG
ACATCCACG
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Coding sequence (CDS) from alignment at CM002465.1:963757..964715+

>rna5422 ID=rna5422|Name=rna5422|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002465.1:963757..964715+ (Nannochloropsis gaditana)
ATGGAGCCGTTGCGGAAGTGCAAGCAGGCTAAGTACTTTGTGACCAATGC
CCAAGGCATGCTCACTCCCTACCACagtgggacgggggaggaccCGAacg
tccctccttgtccccgctGTCCCATGGTGTTGCTCaccgaaggcggggag
aaaCAGGGCCCGTTGACGTGCCAGAGTTGCGGGGCGGTCCGGGGAGGGCT
ATACGAAATCGAGTCGGAGAGACTGCTGGTACCGGACATAGAGTTTGCCG
ATTTTGAGAAAGCAGCCCAGCGAGCCAAGCCCTCTGTGGCCCCGGAAGAA
CTCGATCACTTCACAGAGTGGACGACAGAATTTGGACAGGAGGGATGAAT
GGAGCCGTTGCGGAAGTGCAAGCAGGCTAAGTACTTTGTGACCAATGCCC
AAGGCATGCTCACTCCCTACCACagtgggacgggggaggaccCGAacgtc
cctccttgtccccgctGTCCCATGGTGTTGCTCaccgaaggcggggagaa
aCAGGGCCCGTTGACGTGCCAGAGTTGCGGGGCGGTCCGGGGAGGGCTAT
ACGAAATCGAGTCGGAGAGACTGCTGGTACCGGACATAGAGTTTGCCGAT
TTTGAGAAAGCAGCCCAGCGAGCCAAGCCCTCTGTGGCCCCGGAAGAACT
CGATCACTTCACAGAGTGGACGACAGAATTTGGACAGGAGGGATGAATGG
AGCCGTTGCGGAAGTGCAAGCAGGCTAAGTACTTTGTGACCAATGCCCAA
GGCATGCTCACTCCCTACCACagtgggacgggggaggaccCGAacgtccc
tccttgtccccgctGTCCCATGGTGTTGCTCaccgaaggcggggagaaaC
AGGGCCCGTTGACGTGCCAGAGTTGCGGGGCGGTCCGGGGAGGGCTATAC
GAAATCGAGTCGGAGAGACTGCTGGTACCGGACATAGAGTTTGCCGATTT
TGAGAAAGCAGCCCAGCGAGCCAAGCCCTCTGTGGCCCCGGAAGAACTCG
ATCACTTCACAGAGTGGACGACAGAATTTGGACAGGAGGGATGA
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Synonyms
Publications