EWM25264.1, cds5409 (CDS) Nannochloropsis gaditana

Overview
NameEWM25264.1
Unique Namecds5409
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:963795..963849 +
Alignment locationCM002465.1:963996..964168 +
Alignment locationCM002465.1:964406..964525 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25264.1
Productvacuolar sorting atpase
Orig transcript idgnl|cribi|Naga_101559g1.6922.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:963795..963849 +
CM002465.1supercontigCM002465.1:963996..964168 +
CM002465.1supercontigCM002465.1:964406..964525 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015415Vps4_C
Homology
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|585106986|gb|EWM25264.1| (vacuolar sorting atpase [Nannochloropsis gaditana])

HSP 1 Score: 239.195 bits (609), Expect = 4.264e-80
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG
Sbjct:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|298708669|emb|CBJ26156.1| (putative; katanin like protein [Ectocarpus siliculosus])

HSP 1 Score: 97.0561 bits (240), Expect = 2.518e-21
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLRKC+ AK FV     ML P           P CP CP  L T    K G + C +C A+R  LYE+ +E+LLVPD+ + DF KA  ++  SV+ EEL  F +WT +FGQEG
Sbjct:  347 MEPLRKCQMAKQFVPTKDNMLIPAE-------KYPNCPYCPQDLTTRPA-KLGEV-CPTCKAIRTSLYEVATEKLLVPDVCYDDFLKALTKSGSSVSEEELTRFVQWTEDFGQEG 452          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|1173935844|gb|OQR86899.1| (vacuolar protein sorting-associating protein [Achlya hypogyna])

HSP 1 Score: 82.8037 bits (203), Expect = 3.762e-16
Identity = 50/123 (40.65%), Postives = 68/123 (55.28%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDP--NVPPCPRCPMVLLTEGGEKQG-PLTCQSCGAVRGGLYEI-----ESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLR C+QA++F+        P  +G    P  + PPCP C M L + G   QG    C  CGA R  LY++       ++L  P +   DF+K  + +  SVAPEEL+ F +WT+EFGQEG
Sbjct:  338 MEPLRLCQQAQFFM-RCDDKCHPNRNGAFLTPCADDPPCPYCHMKLSSCGSACQGCKAPCARCGAYRMRLYDLPERGFRDDQLKPPMVSMRDFKKVLEHSISSVAPEELNQFIKWTSEFGQEG 459          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|1210519769|dbj|GAX21419.1| (vacuolar protein-sorting-associated protein 4 [Fistulifera solaris])

HSP 1 Score: 82.0333 bits (201), Expect = 6.466e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            M+PLR+C+QAK F  +  G   P           P C +CP  L ++   K    TC+ CGA R  L+E+  E+L+ P ++ ADFEK  + +  +V+ +EL  F EWT  FGQ+G
Sbjct:  340 MQPLRRCQQAKQFYVDEAGNYHPCD-------QYPSCSKCPPKLSSDPPNKD--YTCRHCGAKRMTLWEVPPEKLVAPPVQRADFEKVMRNSVSTVSDDELQRFVEWTKLFGQDG 445          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|568059662|gb|ETM56234.1| (hypothetical protein L914_00757 [Phytophthora parasitica])

HSP 1 Score: 78.1814 bits (191), Expect = 1.053e-15
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDP--NVPPCPRCPMVLLT---EGGEKQGPLTCQSCGAVRGGLYEI-----ESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLRKC+QA++F T       P  +G    P  + PPC  C M L T   +  E + P  CQ CGA+R  LY++       E+L  P I  +DF +  + +  +VA +EL+ F +WT EFGQEG
Sbjct:   70 MEPLRKCQQAQFF-TPCDDKAHPVRNGPFLTPCEDDPPCAYCHMKLSTCRPKCPECKAP--CQRCGALRMRLYDLPERGYSDEKLRPPMISMSDFTRVLEHSTATVASDELNRFVKWTQEFGQEG 191          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|1210515551|dbj|GAX25630.1| (vacuolar protein-sorting-associated protein 4 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 2.975e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            M+PLR+C+QAK F  +  G   P           P C +CP  L ++   K    TC+ CGA R  L+E+  E+L+ P ++  DFEK  + +  +V+ +EL  F EWT  FGQ+G
Sbjct:  340 MQPLRRCQQAKQFYVDEAGNYHPCD-------QYPSCSKCPPKLSSDPPNKD--YTCRHCGAKRMTLWEVPPEKLVAPPVQRTDFEKVMRNSVSTVSEDELQRFVEWTKLFGQDG 445          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|673042855|ref|XP_008875388.1| (hypothetical protein H310_10718 [Aphanomyces invadans] >gi|574469061|gb|ETV96077.1| hypothetical protein H310_10718 [Aphanomyces invadans])

HSP 1 Score: 79.7221 bits (195), Expect = 3.538e-15
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDP--NVPPCPRCPMVLLTEGGEKQGPLT-CQSCGAVRGGLYEI-----ESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLR+C+QA++F         P  +GT   P  + PPCP C M L +      G  T CQ CG+ R  LY++        +L  P +   +F K  + +  SVAPEEL  F +WT+EFGQEG
Sbjct:  339 MEPLRQCQQAQFFC-RCDDKARPTRNGTFLTPCEDDPPCPHCHMKLSSCPSNCTGCKTPCQRCGSYRMRLYDLPDRGFNDSQLKPPMVSMTNFNKVLEHSISSVAPEELHQFVKWTSEFGQEG 460          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|1072232038|gb|OEU16770.1| (AAA-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.337 bits (194), Expect = 5.169e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDPNVPPCPRCPMVLLTEGGEKQGPLTCQSCGAVRGGLYEIESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            M+PLR+C++AK FV +  G   P           P C  CP  L ++  +K    TC+ CGAVR  L++I  E+L  P + + DF+   + +  SV+P+EL  F EWT  FGQ+G
Sbjct:  341 MQPLRRCQKAKQFVIDKDGWYIPSE-------KYPSCSSCPPKLSSD--KKGTDYTCKRCGAVRMSLWDIPPEKLQAPMVLYDDFKTVMKSSVSSVSPDELKRFEEWTKLFGQDG 446          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|301095171|ref|XP_002896687.1| (vacuolar protein sorting-associating protein, putative [Phytophthora infestans T30-4] >gi|262108826|gb|EEY66878.1| vacuolar protein sorting-associating protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 78.9518 bits (193), Expect = 8.549e-15
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDP--NVPPCPRCPMVL---LTEGGEKQGPLTCQSCGAVRGGLYEI-----ESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLRKC+QA++F T       P  +G    P  + PPC  C M L    ++  + + P  CQ CGA+R  LY++       E+L  P I  +DF +    +  +VAP+EL+ F +WT EFGQEG
Sbjct:  339 MEPLRKCQQAQFF-TACNDKARPVRNGQFLTPCEDDPPCAYCHMKLSSCRSKCPDCKAP--CQLCGALRMRLYDLPERGYSDEKLRPPMISMSDFTRVLAHSTATVAPDELNRFVKWTQEFGQEG 460          
BLAST of EWM25264.1 vs. NCBI_GenBank
Match: gi|566033847|gb|ETI56758.1| (hypothetical protein F443_00826 [Phytophthora parasitica P1569] >gi|567971537|gb|ETK96543.1| hypothetical protein L915_00777 [Phytophthora parasitica] >gi|567999863|gb|ETL49896.1| hypothetical protein L916_00770 [Phytophthora parasitica] >gi|568029046|gb|ETM02978.1| hypothetical protein L917_00741 [Phytophthora parasitica] >gi|570337542|gb|ETO85490.1| hypothetical protein F444_00845 [Phytophthora parasitica P1976] >gi|570961549|gb|ETP26528.1| hypothetical protein F441_00819 [Phytophthora parasitica CJ01A1] >gi|570998251|gb|ETP54501.1| hypothetical protein F442_00790 [Phytophthora parasitica P10297])

HSP 1 Score: 78.1814 bits (191), Expect = 1.533e-14
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    1 MEPLRKCKQAKYFVTNAQGMLTPYHSGTGEDP--NVPPCPRCPMVLLT---EGGEKQGPLTCQSCGAVRGGLYEI-----ESERLLVPDIEFADFEKAAQRAKPSVAPEELDHFTEWTTEFGQEG 115
            MEPLRKC+QA++F T       P  +G    P  + PPC  C M L T   +  E + P  CQ CGA+R  LY++       E+L  P I  +DF +  + +  +VA +EL+ F +WT EFGQEG
Sbjct:  361 MEPLRKCQQAQFF-TPCDDKAHPVRNGPFLTPCEDDPPCAYCHMKLSTCRPKCPECKAP--CQRCGALRMRLYDLPERGYSDEKLRPPMISMSDFTRVLEHSTATVASDELNRFVKWTQEFGQEG 482          
The following BLAST results are available for this feature:
BLAST of EWM25264.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106986|gb|EWM25264.1|4.264e-80100.00vacuolar sorting atpase [Nannochloropsis gaditana][more]
gi|298708669|emb|CBJ26156.1|2.518e-2146.09putative; katanin like protein [Ectocarpus silicul... [more]
gi|1173935844|gb|OQR86899.1|3.762e-1640.65vacuolar protein sorting-associating protein [Achl... [more]
gi|1210519769|dbj|GAX21419.1|6.466e-1638.26vacuolar protein-sorting-associated protein 4 [Fis... [more]
gi|568059662|gb|ETM56234.1|1.053e-1540.00hypothetical protein L914_00757 [Phytophthora para... [more]
gi|1210515551|dbj|GAX25630.1|2.975e-1537.39vacuolar protein-sorting-associated protein 4 [Fis... [more]
gi|673042855|ref|XP_008875388.1|3.538e-1539.84hypothetical protein H310_10718 [Aphanomyces invad... [more]
gi|1072232038|gb|OEU16770.1|5.169e-1538.26AAA-domain-containing protein [Fragilariopsis cyli... [more]
gi|301095171|ref|XP_002896687.1|8.549e-1539.20vacuolar protein sorting-associating protein, puta... [more]
gi|566033847|gb|ETI56758.1|1.533e-1440.00hypothetical protein F443_00826 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5422rna5422Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications