rna5421, rna5421 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5421
Unique Name	rna5421
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	772
Alignment location	CM002465.1:961548..962814 +

Link to JBrowse

Properties


Property Name	Value
Product	putative vps4-vacuolar sorting protein
Orig transcript id	gnl\|cribi\|Naga_100901g1.4492.mrna
Orig protein id	gnl\|cribi\|Naga_100901g1.4492
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:961548..962814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100901g1	gene5241	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5421	rna5421-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25266.1	cds5408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:961548..962814+
coding sequence from alignment at CM002465.1:961548..962814+

mRNA sequence

>rna5421 ID=rna5421|Name=rna5421|organism=Nannochloropsis gaditana|type=mRNA|length=772bp
GGAGGTCGCGAGGTGAAATCAGGTTAACCACTATGCCTTCACTTACAAAG
AAAATGTCTAACATGAACACATGAACAGCATGGCTAGGTTGGTTCGAGGG
AAAGAAAAGATGCGGGGACACTGCGGCGTGTCTTCCTGCCTCCTTTTGGT
TTTATTTCTCTCCCTTGTGGACGCCGCCACGGCCTTCGTGACCCCCTTCA
GCCTGCGCTTCCTTGACCGCCTACCCTCAACGACCTCTCGAGAGAACAGC
AGAGGCAGCAGTGGGGTATCACTTTACGCAGCCCGTAAGAAGAAGAATTC
GGGCAGCGCTGGTGAAGGATTTGGACAGAATGTGCAGAAGAAAAAAGAAG
CAGCACCCGCCCCTGTGCCAGAGGGAAGTGGGGGGAAGGAAGAAGAAAGA
AGAGGAGTGACACGAGAAGAATTGGCCACGCCGGCCGCAGCCGGGGAGTT
CAAGGCTAAGATGGATGAAGTAGGCAAGAGCCTTCAGGCGCTGGCCGACC
AAGTGAACGCACGAGAGGGGGAAGGGGAGAACCCCTACGACCCTGCCTTT
GTGGCGGAACAAAAACGTTTGCGTGCTGAGATAGACTTCGAGCGCCCGTA
CGCCCGGGTTCGCCCTAGAAACTGGGATTACATAACCGGATTGCCCGTGC
CCAAAATTGTCCAGATCGAGGACATGATTCCCATTCCTGCCCCCAGTCTC
CGGGACGAATTTCGCGAACGTCGCCCGAACGACCCCGCCTACATGGCGCA
ACGCATTAAGGTCAGGAGATAG

protein sequence of rna5421

>rna5421-protein ID=rna5421-protein|Name=rna5421|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKS
GHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQI
SPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQ
VAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD

mRNA from alignment at CM002465.1:961548..962814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5421 ID=rna5421|Name=rna5421|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp|location=Sequence derived from alignment at CM002465.1:961548..962814+ (Nannochloropsis gaditana)
ATGGCCTCGAGCAACTTCATCACGCAGGCCATTGAGATTGTGAAGCAAGC
GATCGACGCCGACCAAAAGGGAGAATATGAAAACGCATTGGGTTACTACA
AGAAAAGCCTTGGtaaacaggagggagggggacggagggctcGTTGAATG
GGGAAGAGCAGGGGTATTGGGGCGCAGGAGCCACAACAGAGTAGAGATGC
TGCCACATGGACACTAcgtttgctttttttccttctcgaaaTCTTGTCCC
TCCGGTCGCCTGGTCCCTCGTGTCCCTTTCCTTGacaggccctccctccc
cctcgcccctcccctcccctttagACTACTTTATGGCAGGATTGAAGTAC
GAAAAAAAATCCGGCCACGAAGGCAACGATACAAGCCCGGGTAGAAGGCT
ACATGAAGCGCGCCGAAGacttgaaggaggtggtggaaaaAGAGCGCGCA
GCGGCCCAAaaccgagggaggaagggaggtggggaaggtggaaCGGCCAC
CCGGCagccgggggaggacgagaaggaggaggaggataagaaCAAGTTGA
AAGGGGCGTTGGCTTCCTCCATTGTCACGGACAAGCCCAATGTCCGgtgg
gaggacgtggccggtttggaggccgccaaggaggccttgaaggaggcggt
gcgttccccttccttcctccctccctccctccctccctctctccctccct
tttgtccgctcccttttctttccttcccccctctacTTGTCtcggggggg
aaatggcCCTCCGCTTTGGTGTTGCACCctttcaccctcccccccccccc
tccttccctccctccctccctccctccttcctccgtcccaggTGATCCTC
CCCGTCAGATTTCCCCAGCTCTTCGTCGGGAAACGCAAGCCCTGGAGAGG
CATCCTACTCTACGGCCCGCCCGGGACAGGAAAGTCGTTTTTAGCCAAGG
CCGTCGCCACCGAGGCCGACTGCAAATTcttctctgtctcttcctccgac
ctAGGtgcccctcgcctccctccctcccgccctccctcccgccctccctc
cccttctccctccttctctctccctgaCGTCTTCTTCATGTATAATCCTa
accgtccctccctccctctttccctccctcccacccccccttccagTCAG
CAAGTGGCAGGGCGAGAGCGAGCGCTTGGTGCGTTCGCTCTTCGAGATGg
ctcgggaggagggccgggccATCATATTCATCGACGAAGTGGACTCGTTG
TGCGGGCAGCGGactga

Coding sequence (CDS) from alignment at CM002465.1:961548..962814+

>rna5421 ID=rna5421|Name=rna5421|organism=Nannochloropsis gaditana|type=CDS|length=2820bp|location=Sequence derived from alignment at CM002465.1:961548..962814+ (Nannochloropsis gaditana)
ATGGCCTCGAGCAACTTCATCACGCAGGCCATTGAGATTGTGAAGCAAGC
GATCGACGCCGACCAAAAGGGAGAATATGAAAACGCATTGGGTTACTACA
AGAAAAGCCTTGACTACTTTATGGCAGGATTGAAGTACGAAAAAAAATCC
GGCCACGAAGGCAACGATACAAGCCCGGGTAGAAGGCTACATGAAGCGCG
CCGAAGacttgaaggagCCCAATGTCCGgtgggaggacgtggccggtttg
gaggccgccaaggaggccttgaaggaggcggTGATCCTCCCCGTCAGATT
TCCCCAGCTCTTCGTCGGGAAACGCAAGCCCTGGAGAGGCATCCTACTCT
ACGGCCCGCCCGGGACAGGAAAGTCGTTTTTAGCCAAGGCCGTCGCCACC
GAGGCCGACTGCAAATTcttctctgtctcttcctccgacctAGTCAGCAA
GTGGCAGGGCGAGAGCGAGCGCTTGGTGCGTTCGCTCTTCGAGATGgctc
gggaggagggccgggccATCATATTCATCGACGAAGTGGACTCGTTGTGC
GGGCAGCGGactgaATGGCCTCGAGCAACTTCATCACGCAGGCCATTGAG
ATTGTGAAGCAAGCGATCGACGCCGACCAAAAGGGAGAATATGAAAACGC
ATTGGGTTACTACAAGAAAAGCCTTGACTACTTTATGGCAGGATTGAAGT
ACGAAAAAAAATCCGGCCACGAAGGCAACGATACAAGCCCGGGTAGAAGG
CTACATGAAGCGCGCCGAAGacttgaaggagCCCAATGTCCGgtgggagg
acgtggccggtttggaggccgccaaggaggccttgaaggaggcggTGATC
CTCCCCGTCAGATTTCCCCAGCTCTTCGTCGGGAAACGCAAGCCCTGGAG
AGGCATCCTACTCTACGGCCCGCCCGGGACAGGAAAGTCGTTTTTAGCCA
AGGCCGTCGCCACCGAGGCCGACTGCAAATTcttctctgtctcttcctcc
gacctAGTCAGCAAGTGGCAGGGCGAGAGCGAGCGCTTGGTGCGTTCGCT
CTTCGAGATGgctcgggaggagggccgggccATCATATTCATCGACGAAG
TGGACTCGTTGTGCGGGCAGCGGactgaATGGCCTCGAGCAACTTCATCA
CGCAGGCCATTGAGATTGTGAAGCAAGCGATCGACGCCGACCAAAAGGGA
GAATATGAAAACGCATTGGGTTACTACAAGAAAAGCCTTGACTACTTTAT
GGCAGGATTGAAGTACGAAAAAAAATCCGGCCACGAAGGCAACGATACAA
GCCCGGGTAGAAGGCTACATGAAGCGCGCCGAAGacttgaaggagCCCAA
TGTCCGgtgggaggacgtggccggtttggaggccgccaaggaggccttga
aggaggcggTGATCCTCCCCGTCAGATTTCCCCAGCTCTTCGTCGGGAAA
CGCAAGCCCTGGAGAGGCATCCTACTCTACGGCCCGCCCGGGACAGGAAA
GTCGTTTTTAGCCAAGGCCGTCGCCACCGAGGCCGACTGCAAATTcttct
ctgtctcttcctccgacctAGTCAGCAAGTGGCAGGGCGAGAGCGAGCGC
TTGGTGCGTTCGCTCTTCGAGATGgctcgggaggagggccgggccATCAT
ATTCATCGACGAAGTGGACTCGTTGTGCGGGCAGCGGactgaATGGCCTC
GAGCAACTTCATCACGCAGGCCATTGAGATTGTGAAGCAAGCGATCGACG
CCGACCAAAAGGGAGAATATGAAAACGCATTGGGTTACTACAAGAAAAGC
CTTGACTACTTTATGGCAGGATTGAAGTACGAAAAAAAATCCGGCCACGA
AGGCAACGATACAAGCCCGGGTAGAAGGCTACATGAAGCGCGCCGAAGac
ttgaaggagCCCAATGTCCGgtgggaggacgtggccggtttggaggccgc
caaggaggccttgaaggaggcggTGATCCTCCCCGTCAGATTTCCCCAGC
TCTTCGTCGGGAAACGCAAGCCCTGGAGAGGCATCCTACTCTACGGCCCG
CCCGGGACAGGAAAGTCGTTTTTAGCCAAGGCCGTCGCCACCGAGGCCGA
CTGCAAATTcttctctgtctcttcctccgacctAGTCAGCAAGTGGCAGG
GCGAGAGCGAGCGCTTGGTGCGTTCGCTCTTCGAGATGgctcgggaggag
ggccgggccATCATATTCATCGACGAAGTGGACTCGTTGTGCGGGCAGCG
GactgaATGGCCTCGAGCAACTTCATCACGCAGGCCATTGAGATTGTGAA
GCAAGCGATCGACGCCGACCAAAAGGGAGAATATGAAAACGCATTGGGTT
ACTACAAGAAAAGCCTTGACTACTTTATGGCAGGATTGAAGTACGAAAAA
AAATCCGGCCACGAAGGCAACGATACAAGCCCGGGTAGAAGGCTACATGA
AGCGCGCCGAAGacttgaaggagCCCAATGTCCGgtgggaggacgtggcc
ggtttggaggccgccaaggaggccttgaaggaggcggTGATCCTCCCCGT
CAGATTTCCCCAGCTCTTCGTCGGGAAACGCAAGCCCTGGAGAGGCATCC
TACTCTACGGCCCGCCCGGGACAGGAAAGTCGTTTTTAGCCAAGGCCGTC
GCCACCGAGGCCGACTGCAAATTcttctctgtctcttcctccgacctAGT
CAGCAAGTGGCAGGGCGAGAGCGAGCGCTTGGTGCGTTCGCTCTTCGAGA
TGgctcgggaggagggccgggccATCATATTCATCGACGAAGTGGACTCG
TTGTGCGGGCAGCGGactga

Synonyms

Publications