EWM25266.1, cds5408 (CDS) Nannochloropsis gaditana

Overview
NameEWM25266.1
Unique Namecds5408
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:961548..961659 +
Alignment locationCM002465.1:961872..961976 +
Alignment locationCM002465.1:962133..962195 +
Alignment locationCM002465.1:962389..962551 +
Alignment locationCM002465.1:962694..962814 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25266.1
Productputative vps4-vacuolar sorting protein
Orig transcript idgnl|cribi|Naga_100901g1.4492.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:961548..961659 +
CM002465.1supercontigCM002465.1:961872..961976 +
CM002465.1supercontigCM002465.1:962133..962195 +
CM002465.1supercontigCM002465.1:962389..962551 +
CM002465.1supercontigCM002465.1:962694..962814 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007330MIT
Homology
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|585106990|gb|EWM25266.1| (putative vps4-vacuolar sorting protein [Nannochloropsis gaditana])

HSP 1 Score: 374.015 bits (959), Expect = 4.439e-131
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD 187
            MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD
Sbjct:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD 187          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|388852915|emb|CCF53363.1| (probable VPS4-vacuolar sorting protein [Ustilago hordei])

HSP 1 Score: 67.0106 bits (162), Expect = 1.011e-9
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
            MA+S+F+ +AIEIV++AID D K  Y+ A   Y+ SLDYFM  +KYEK         K   E  D +   + H A+   + ++  VG  G     GG  GG + G D    I P  ++      +  L   P +R
Sbjct:    1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSNEDRSRAAVGANGAEKGVGGSTGGKKDGED--DDIDPETKKLRAGLSSAVLSETPNVR 133          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|673530745|emb|CDI56953.1| (probable VPS4-vacuolar sorting protein [Melanopsichium pennsylvanicum 4])

HSP 1 Score: 66.6254 bits (161), Expect = 1.156e-9
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
            MA+S+F+ +AIEIV++AID D K  Y+ A   Y+ SLDYFM  +KYEK         K   E  D +   + H A+   + ++  VG  G     GG  GG + G D    + P  R+      +  L   P +R
Sbjct:    1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSSEDRSRAAVGANGAEKGVGGSTGGRKDGEDD--DVDPETRKLRAGLSSAVLSETPNVR 133          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|1183472276|gb|ORY96153.1| (Vps4 protein [Syncephalastrum racemosum])

HSP 1 Score: 66.6254 bits (161), Expect = 1.240e-9
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
            M++S+F+ +AI+IVK+A D D KG Y+ A GYY+ +LDYFM  +KYEK
Sbjct:    1 MSNSDFLAKAIDIVKKATDEDHKGNYKEAYGYYQTALDYFMTAIKYEK 48          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|1098865462|emb|SAM80565.1| (probable VPS4-vacuolar sorting protein [Ustilago bromivora])

HSP 1 Score: 65.855 bits (159), Expect = 2.191e-9
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
            MA+S+F+ +AIEIV++AID D K  Y+ A   Y+ SLDYFM  +KYEK         K   E  D +   + H A+   + ++  VG  G     GG  GG + G D    I P  ++      +  L   P +R
Sbjct:    1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKGNEDRSRAAVGANGAEKGVGGSTGGKKDGED--DDIDPETKKLRAGLSSAVLSETPNVR 133          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|552913079|gb|ERZ98427.1| (hypothetical protein GLOINDRAFT_39456 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 65.855 bits (159), Expect = 2.508e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
            MA+ +F+ +AIEIVK+A D D KG YE A  YY  +LDYFM  +KYEK
Sbjct:    1 MANCDFLAKAIEIVKKATDEDNKGNYEQAYKYYNNALDYFMHAMKYEK 48          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|758975195|ref|XP_011387652.1| (putative AAA family ATPase VPS4 [Ustilago maydis 521] >gi|757948033|gb|KIS70498.1| putative AAA family ATPase VPS4 [Ustilago maydis 521])

HSP 1 Score: 65.4698 bits (158), Expect = 3.565e-9
Identity = 45/135 (33.33%), Postives = 65/135 (48.15%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
            MA+S+F+ +AIEIV++AID D K  Y+ A   Y+ SLDYFM  +KYEK         K   E  D +   + H A+   +  +  VG  G     GG  GG + G D    + P  ++      +  L   P +R
Sbjct:    1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSSEDRNRAAVGANGAEKGVGGSTGGKKEGDDD--DVDPETKKLRAGLSSAVLSETPNVR 133          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|820657899|emb|CDZ96873.1| (probable vps4-vacuolar sorting protein [Xanthophyllomyces dendrorhous])

HSP 1 Score: 64.6994 bits (156), Expect = 6.239e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    2 ASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
            ++SNF+ +AIEIV++AIDAD K +YE A   Y+ SLDYFM  +KYEK
Sbjct:    3 SNSNFLDKAIEIVQKAIDADVKQDYEEAYKQYQNSLDYFMMAMKYEK 49          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|298708669|emb|CBJ26156.1| (putative; katanin like protein [Ectocarpus siliculosus])

HSP 1 Score: 63.929 bits (154), Expect = 1.188e-8
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    4 SNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYE 47
            S FI +AI++VK AI AD   +YE ALG YKKSL+YFM GLKYE
Sbjct:    3 SQFIPKAIDMVKDAIAADNNQDYETALGLYKKSLEYFMTGLKYE 46          
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|573029649|gb|ETS62873.1| (hypothetical protein PaG_02631 [Moesziomyces aphidis DSM 70725])

HSP 1 Score: 63.1586 bits (152), Expect = 2.321e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
            MA+S+F+ +AIEIV++AID D K  Y+ A   Y+ SLDYFM  +KYEK
Sbjct:    1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEK 48          
The following BLAST results are available for this feature:
BLAST of EWM25266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106990|gb|EWM25266.1|4.439e-131100.00putative vps4-vacuolar sorting protein [Nannochlor... [more]
gi|388852915|emb|CCF53363.1|1.011e-934.07probable VPS4-vacuolar sorting protein [Ustilago h... [more]
gi|673530745|emb|CDI56953.1|1.156e-934.07probable VPS4-vacuolar sorting protein [Melanopsic... [more]
gi|1183472276|gb|ORY96153.1|1.240e-956.25Vps4 protein [Syncephalastrum racemosum][more]
gi|1098865462|emb|SAM80565.1|2.191e-934.07probable VPS4-vacuolar sorting protein [Ustilago b... [more]
gi|552913079|gb|ERZ98427.1|2.508e-958.33hypothetical protein GLOINDRAFT_39456 [Rhizophagus... [more]
gi|758975195|ref|XP_011387652.1|3.565e-933.33putative AAA family ATPase VPS4 [Ustilago maydis 5... [more]
gi|820657899|emb|CDZ96873.1|6.239e-959.57probable vps4-vacuolar sorting protein [Xanthophyl... [more]
gi|298708669|emb|CBJ26156.1|1.188e-865.91putative; katanin like protein [Ectocarpus silicul... [more]
gi|573029649|gb|ETS62873.1|2.321e-856.25hypothetical protein PaG_02631 [Moesziomyces aphid... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5421rna5421Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications