EWM25266.1, cds5408 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|585106990|gb|EWM25266.1| (putative vps4-vacuolar sorting protein [Nannochloropsis gaditana]) HSP 1 Score: 374.015 bits (959), Expect = 4.439e-131 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD 187
MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD
Sbjct: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEKKSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGRFGGRQGGLEGGGDPPRQISPALRRETQALERHPTLRPARDRKVVFSQGRRHRGRLQILLCLFLRPSQQVAGRERALGAFALRDGSGGGPGHHIHRRSGLVVRAAD 187
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|388852915|emb|CCF53363.1| (probable VPS4-vacuolar sorting protein [Ustilago hordei]) HSP 1 Score: 67.0106 bits (162), Expect = 1.011e-9 Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
MA+S+F+ +AIEIV++AID D K Y+ A Y+ SLDYFM +KYEK K E D + + H A+ + ++ VG G GG GG + G D I P ++ + L P +R
Sbjct: 1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSNEDRSRAAVGANGAEKGVGGSTGGKKDGED--DDIDPETKKLRAGLSSAVLSETPNVR 133
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|673530745|emb|CDI56953.1| (probable VPS4-vacuolar sorting protein [Melanopsichium pennsylvanicum 4]) HSP 1 Score: 66.6254 bits (161), Expect = 1.156e-9 Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
MA+S+F+ +AIEIV++AID D K Y+ A Y+ SLDYFM +KYEK K E D + + H A+ + ++ VG G GG GG + G D + P R+ + L P +R
Sbjct: 1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSSEDRSRAAVGANGAEKGVGGSTGGRKDGEDD--DVDPETRKLRAGLSSAVLSETPNVR 133
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|1183472276|gb|ORY96153.1| (Vps4 protein [Syncephalastrum racemosum]) HSP 1 Score: 66.6254 bits (161), Expect = 1.240e-9 Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
M++S+F+ +AI+IVK+A D D KG Y+ A GYY+ +LDYFM +KYEK
Sbjct: 1 MSNSDFLAKAIDIVKKATDEDHKGNYKEAYGYYQTALDYFMTAIKYEK 48
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|1098865462|emb|SAM80565.1| (probable VPS4-vacuolar sorting protein [Ustilago bromivora]) HSP 1 Score: 65.855 bits (159), Expect = 2.191e-9 Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
MA+S+F+ +AIEIV++AID D K Y+ A Y+ SLDYFM +KYEK K E D + + H A+ + ++ VG G GG GG + G D I P ++ + L P +R
Sbjct: 1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKGNEDRSRAAVGANGAEKGVGGSTGGKKDGED--DDIDPETKKLRAGLSSAVLSETPNVR 133
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|552913079|gb|ERZ98427.1| (hypothetical protein GLOINDRAFT_39456 [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 65.855 bits (159), Expect = 2.508e-9 Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
MA+ +F+ +AIEIVK+A D D KG YE A YY +LDYFM +KYEK
Sbjct: 1 MANCDFLAKAIEIVKKATDEDNKGNYEQAYKYYNNALDYFMHAMKYEK 48
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|758975195|ref|XP_011387652.1| (putative AAA family ATPase VPS4 [Ustilago maydis 521] >gi|757948033|gb|KIS70498.1| putative AAA family ATPase VPS4 [Ustilago maydis 521]) HSP 1 Score: 65.4698 bits (158), Expect = 3.565e-9 Identity = 45/135 (33.33%), Postives = 65/135 (48.15%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK---------KSGHEGNDTSPGRRLHEARRRLEGAQCPVGGRGR---FGGRQGGLEGGGDPPRQISPALRR-----ETQALERHPTLR 118
MA+S+F+ +AIEIV++AID D K Y+ A Y+ SLDYFM +KYEK K E D + + H A+ + + VG G GG GG + G D + P ++ + L P +R
Sbjct: 1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLAKSSEDRNRAAVGANGAEKGVGGSTGGKKEGDDD--DVDPETKKLRAGLSSAVLSETPNVR 133
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|820657899|emb|CDZ96873.1| (probable vps4-vacuolar sorting protein [Xanthophyllomyces dendrorhous]) HSP 1 Score: 64.6994 bits (156), Expect = 6.239e-9 Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0
Query: 2 ASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
++SNF+ +AIEIV++AIDAD K +YE A Y+ SLDYFM +KYEK
Sbjct: 3 SNSNFLDKAIEIVQKAIDADVKQDYEEAYKQYQNSLDYFMMAMKYEK 49
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|298708669|emb|CBJ26156.1| (putative; katanin like protein [Ectocarpus siliculosus]) HSP 1 Score: 63.929 bits (154), Expect = 1.188e-8 Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0
Query: 4 SNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYE 47
S FI +AI++VK AI AD +YE ALG YKKSL+YFM GLKYE
Sbjct: 3 SQFIPKAIDMVKDAIAADNNQDYETALGLYKKSLEYFMTGLKYE 46
BLAST of EWM25266.1 vs. NCBI_GenBank
Match: gi|573029649|gb|ETS62873.1| (hypothetical protein PaG_02631 [Moesziomyces aphidis DSM 70725]) HSP 1 Score: 63.1586 bits (152), Expect = 2.321e-8 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 1 MASSNFITQAIEIVKQAIDADQKGEYENALGYYKKSLDYFMAGLKYEK 48
MA+S+F+ +AIEIV++AID D K Y+ A Y+ SLDYFM +KYEK
Sbjct: 1 MANSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEK 48 The following BLAST results are available for this feature:
BLAST of EWM25266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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