rna542, rna542 (mRNA) Nannochloropsis gaditana

Overview
Namerna542
Unique Namerna542
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1158
Alignment locationCM002455.1:1359706..1361645 -

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Properties
Property NameValue
ProductDNA helicase DnaB
Orig transcript idgnl|cribi|Naga_100332g4.10249.mrna
Orig protein idgnl|cribi|Naga_100332g4.10249
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1359706..1361645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100332g4gene523Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30134.1cds542Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna542rna542-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna542 ID=rna542|Name=rna542|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp
CATCCATGGACGCCAATTAATGCGACGTTCTCTCCCGAACCACCGGCCGA
TCCCCCCCCCGCCCCCACCCATCGGCTTTCAACCCCCCCCCGCCGTACAT
GCTTTCCCGCTCCAAACTCAAGCCCAACCCGTTGTCCTCCACCTCCACCA
ACGTGCCCGTCTGCTTCTGGAAAGCCAGGGGCACCACGCCCAGGTCCCCG
TCGTACCGATTCTTCCGCACGTCTAGGTAATGACGGCCCTGGTGGCGTTG
GAGGATGACGACGTTGTCCGCGTCCTGCGTCGCTTTGGATCTACCGGCCG
CAACGAATCGCCCATAGTCATGAGAATTGAGTATCCCAATCCGGCACGTG
TACGACATGCCTCTTTACAGCTATGAAGGCATTCGACAGGCCCTTTTGCC
ACACACCGTCGCTTGATTTCGCGTTATAACTGACGTTTCGTCTTCTGTTA
CGCCCTATTCTGTCAAGCCGATTCTCAGTCTCCATCGTCAACGTCCCCTC
TTCCCGTGCCTTCTCCGGCTCCCTTGTGTCATTTCTGTTTCTCATGCATT
CTTCTTCCCTCTCTCACCTTGCGCCACAGGCTTCGCTACGTCAAGACGGA
CGACGAGCTCGCGTGGGCCCTCCCTGCGGATGGTATCGTCCTCGGCAAGT
CCTACGAGATCAAATGGAGGATTCGCCTGGGCCGGGGCGTCGCGAGCGGC
ACCCAGCTGCCCCTCACTGTGAGCGTGGCGGATTGGATGGAGGACGAGGT
CGTAAGTGCCAAGTAGACGCAAATGGGAGGATGTTGGCCCATGGCTGGTA
CGGGAGGGTACGCTCTTTGGCTTTTGCTTCTTCGCAATGTGCGCGGGCAG
GAAAATTGTTGGTGGATGCTCAGAGTATTTGTTAATGCAAAACACTTGAC
GGAGGGTGCGACCTAATAGTTTGGTTGAAATGATTGGAATATTCGGAAAA
CGTTGTGAATTTGTTTAATAATGGAATGAATGTGAGACTAGATGGAAGTG
TCATCATGGAGCTCGAACCAAAGAGCTACTGATACTGATGAGGGACTATA
CAGAGGGGTGTGACCTGAATGAAAGCTTTGAAACGACTATGCAACCAAAT
GAATGGCTTTATCAAGGAGCTCAAGGAGTTTAAAACAAAGAATTAATTCA
CATGGTGG
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protein sequence of rna542

>rna542-protein ID=rna542-protein|Name=rna542|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRR
AAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGAR
RTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLR
PLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTF
LSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDA
VADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMA
MGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESD
QFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPL
AFQKQTGTLVEVEDNGLGLSLERESMYGGGGWKSMGGGGGGIGRWFGRKR
RIDWRPWMVGGGGEVVR
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mRNA from alignment at CM002455.1:1359706..1361645-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna542 ID=rna542|Name=rna542|organism=Nannochloropsis gaditana|type=mRNA|length=1940bp|location=Sequence derived from alignment at CM002455.1:1359706..1361645- (Nannochloropsis gaditana)
CGTCCCGCATGTCCCCTTCCGAGCTGGGCCAACGCCTCCGCGAGTACCAG
TACGCCTTGATGGACGACCCGTCCCACCGGCACGTCCGGGACTGGCTCAC
CGGGAAAGCGCCGGGGCAACGCGGTCTGACCCCCACCGTCCTAAGGAAGT
ACGGGGTCGGGTGCGGTACGTTCTCCTTTATGAACGACCAAAACGTCTTC
GAACCCACGGAGTGCGTGGTCTTCCCCTGGATGCTTCCCTTGCCCGGCAA
ATCCCCCCCCCGGCACGCCCTCCCTCCCGGCCTCCCCCCCGTCCTCCGCC
CCGACCTGGGTGCCTCGGCGCTGCAAGGTCCGGGCCATGAAGCAGAAGGC
GTGGCAGCGGCTGTACCCCTCCCCCTCCGCGGGATGGGGCCTCTTTGGTC
TCCACACAGTGGGCGCGGACGCTAAGGAGATCATTCTGACGGAAGGGGAG
TTCGACGCCATGGCGGTCTACCAGGCCACGCGCCGGGCGGCCGTTTCTCT
CCCCAACGGCTGTCGATCGTTACCGGTTGAAGTCCTCCCGTTGCTCGAGC
GTTTCGAGCGGATTTTGTTGTGGATGGACAACGACACGCCGGGCATTGAA
GGCGCGGAAAAGTTCGCGAATAAATTGGGGGCCCGCCGCACCTTTATCGT
CCGAGCGCTCCCGGAGGACCTCGACCCCCCCAAGGACGCCAACGACGCCC
TGCTTCGAAATTTGAATTTGGAACGGATGATTCAAAATGCGCAACGGCTC
CCCGACACGCGTGTCATCCGTTTCTCCGACCTTCGCCCCTTGGTGTTTGA
CGAGCTGCGGAACCGGGACAAGCACGAAGGCGTCTCGGCCAAGTCTTTCC
CGGGCCTCATGGCGCTGCTGAAAGGCTTCCGGAAGGGGGAGATGACGGTC
TTGACAGGCCCCACGGGCGCGGGGAAAACCACCTTCCTCTCCCAGCTCTC
CCTGGACCTGGCTCGGGGGGGCATGAACACGCTGTGGGGGTCGTTTGAGG
TGCAAAACGTCAAGTTGATCGAGAAGATGATGCGGCAATACCACGCCGCC
CCGTTGCCCATGGGGGATTTGAAAAGCTTGGACGCGGTGGCCGACCGGTT
TGGGCAGCTCCCGCTCATGTTCATGCGGTTTCATGGCAGCTCGAACGTGG
AAGAGGTTGTTGATGCGATGGAATACTGTGCCTATGTGCATGATACGGAG
TTGGTGGTGCTGGACAATCTCCAGTTCATGATGGCCATGGGGAGCCGGGA
AGGGGGAATGGGGGGGGGGAAGGGGGGCTTTGACCGATTTTATCAGATGG
ACGTGGCGGTGGAGAAATTCCGACGCTTTGCCACGGAGAAGAACATCCAC
GTGATATTGGTGGTGCACCCCCGCAAGGAGAGCGATCAGTTCCGTCTCGG
AATTTCCTCCTTCTCGGGCACGGCCAAGGCGACGCAGGACGCGGACAACG
TGGTCATTCTCCAACGCCACCAAGGCCGTCACTACCTGGACGTGCGGAAG
AATCGGTACGACGGGGACCTGGGCGTGGTCCCCCTGGCCTTCCAGAAGCA
GACGGGCACGTTGGTGGAGGTGGAGGACAACGGGTTGGGCTTGAGTTTGG
AGCGGGAAAGCATGTACGGCGGGGGGGGTTGGAAGTCGATGGGTGGGGGC
GGGGGGGGGATCGGCCGGTGGTTCGGGAGAAAACGTCGCATTGATTGGCG
TCCATGGATGGTGGGGGGCGGGGGGGAGGTTGTACGGTAGGACGGTGGAA
GGAGGAAGGGGGGGGGGGGGAAGGAAACTGAGGGGAGGGCTCACAGTAAA
GGAGTGGCTGAATCACAGAGAGGATAAAAAGTAAGATAATCGTAAAGATA
CGGTCCCCGTCGTGGCGTATTCCCTGACTGGCCGATCTCCAGTGGCGGCT
TTACCACAGATACTTGTATATTGGGGGGGGAACCCCTTTT
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Coding sequence (CDS) from alignment at CM002455.1:1359706..1361645-

>rna542 ID=rna542|Name=rna542|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002455.1:1359706..1361645- (Nannochloropsis gaditana)
ATGAAGCAGAAGGCGTGGCAGCGGCTGTACCCCTCCCCCTCCGCGGGATG
GGGCCTCTTTGGTCTCCACACAGTGGGCGCGGACGCTAAGGAGATCATTC
TGACGGAAGGGGAGTTCGACGCCATGGCGGTCTACCAGGCCACGCGCCGG
GCGGCCGTTTCTCTCCCCAACGGCTGTCGATCGTTACCGGTTGAAGTCCT
CCCGTTGCTCGAGCGTTTCGAGCGGATTTTGTTGTGGATGGACAACGACA
CGCCGGGCATTGAAGGCGCGGAAAAGTTCGCGAATAAATTGGGGGCCCGC
CGCACCTTTATCGTCCGAGCGCTCCCGGAGGACCTCGACCCCCCCAAGGA
CGCCAACGACGCCCTGCTTCGAAATTTGAATTTGGAACGGATGATTCAAA
ATGCGCAACGGCTCCCCGACACGCGTGTCATCCGTTTCTCCGACCTTCGC
CCCTTGGTGTTTGACGAGCTGCGGAACCGGGACAAGCACGAAGGCGTCTC
GGCCAAGTCTTTCCCGGGCCTCATGGCGCTGCTGAAAGGCTTCCGGAAGG
GGGAGATGACGGTCTTGACAGGCCCCACGGGCGCGGGGAAAACCACCTTC
CTCTCCCAGCTCTCCCTGGACCTGGCTCGGGGGGGCATGAACACGCTGTG
GGGGTCGTTTGAGGTGCAAAACGTCAAGTTGATCGAGAAGATGATGCGGC
AATACCACGCCGCCCCGTTGCCCATGGGGGATTTGAAAAGCTTGGACGCG
GTGGCCGACCGGTTTGGGCAGCTCCCGCTCATGTTCATGCGGTTTCATGG
CAGCTCGAACGTGGAAGAGGTTGTTGATGCGATGGAATACTGTGCCTATG
TGCATGATACGGAGTTGGTGGTGCTGGACAATCTCCAGTTCATGATGGCC
ATGGGGAGCCGGGAAGGGGGAATGGGGGGGGGGAAGGGGGGCTTTGACCG
ATTTTATCAGATGGACGTGGCGGTGGAGAAATTCCGACGCTTTGCCACGG
AGAAGAACATCCACGTGATATTGGTGGTGCACCCCCGCAAGGAGAGCGAT
CAGTTCCGTCTCGGAATTTCCTCCTTCTCGGGCACGGCCAAGGCGACGCA
GGACGCGGACAACGTGGTCATTCTCCAACGCCACCAAGGCCGTCACTACC
TGGACGTGCGGAAGAATCGGTACGACGGGGACCTGGGCGTGGTCCCCCTG
GCCTTCCAGAAGCAGACGGGCACGTTGGTGGAGGTGGAGGACAACGGGTT
GGGCTTGAGTTTGGAGCGGGAAAGCATGTACGGCGGGGGGGGTTGGAAGT
CGATGGGTGGGGGCGGGGGGGGGATCGGCCGGTGGTTCGGGAGAAAACGT
CGCATTGATTGGCGTCCATGGATGGTGGGGGGCGGGGGGGAGGTTGTACG
GTAG
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Synonyms
Publications