EWM30134.1, cds542 (CDS) Nannochloropsis gaditana

Overview
NameEWM30134.1
Unique Namecds542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1359906..1361309 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30134.1
ProductDNA helicase DnaB
Orig transcript idgnl|cribi|Naga_100332g4.10249.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1359906..1361309 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003678DNA helicase activity
GO:0003697single-stranded DNA binding
GO:00431395'-3' DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR007694DNA_helicase_DnaB-like_C
IPR027032Twinkle-like
IPR006171Toprim_domain
IPR027417P-loop_NTPase
Homology
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|585112786|gb|EWM30134.1| (DNA helicase DnaB [Nannochloropsis gaditana])

HSP 1 Score: 954.51 bits (2466), Expect = 0.000e+0
Identity = 467/467 (100.00%), Postives = 467/467 (100.00%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLGLSLERESMYGGGGWKSMGGGGGGIGRWFGRKRRIDWRPWMVGGGGEVVR 467
            MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLGLSLERESMYGGGGWKSMGGGGGGIGRWFGRKRRIDWRPWMVGGGGEVVR
Sbjct:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLGLSLERESMYGGGGWKSMGGGGGGIGRWFGRKRRIDWRPWMVGGGGEVVR 467          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|219125812|ref|XP_002183166.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405441|gb|EEC45384.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 484.182 bits (1245), Expect = 4.458e-163
Identity = 236/414 (57.00%), Postives = 308/414 (74.40%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRA----LPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDL---KSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTG 407
            + +K+WQRL P P  GWGLFG HTV  +A EIILTEGE+DAMAV+QAT R AVSLPNGCRSLP EVLPLLE F +I+LWMDND PG EGAE+FA K+G  RT+IV+     +PED   PKDANDALL+ L+LE M+++AQ +P  R++ F DLR  V  E+ + DK+ GV   S P L  ++KGFR+GEMTVLTGPTG+GKTTFL Q+SLDLA  G+N LWGSFE++N +LI K+M+Q+   PLP G+      L+A+ADRF +LP  FM+FHG S+V++V+DAM+Y  YV+D E ++LDN+QFM++    +         FD+F   DVA+EKFR+FAT+KN+HV LVVHPRKE +  +L ++S  G+AKATQ+AD V+ILQ    R Y++V+KNR++G+LG  PL F + TG
Sbjct:  236 VAKKSWQRLDP-PGGGWGLFGFHTVPPEATEIILTEGEYDAMAVWQATGRPAVSLPNGCRSLPPEVLPLLENFAKIILWMDNDGPGQEGAEQFAKKIGLERTYIVKPGKQHVPEDAPLPKDANDALLQGLDLEAMVRDAQPVPHERILTFRDLRSSVLHEIIHPDKYVGVPMTSLPALTNIIKGFRRGEMTVLTGPTGSGKTTFLGQMSLDLAEQGINMLWGSFEIKNTRLIHKLMQQFSREPLPTGEQAVESKLEALADRFERLPFYFMKFHGGSDVDDVLDAMDYAVYVNDVEHIILDNMQFMISRNKNKTST------FDKFDVQDVAIEKFRKFATDKNVHVTLVVHPRKEQEDMKLSMASIYGSAKATQEADTVLILQTDGRRKYIEVKKNRFNGNLGHTPLHFDRLTG 642          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|1072235052|gb|OEU19781.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 473.396 bits (1217), Expect = 2.644e-158
Identity = 237/419 (56.56%), Postives = 300/419 (71.60%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALL-RNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGD----LKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRH-YLDVRKNRYDGDLGVVPLAFQKQTGTLVEVE 413
            +++KAWQRL P P  GWGLFGLHT+  DA EI+LTEGE+DAMAV QAT R AVSLPNGCRSLPV+ LPLLERF++I LWMDND PG EGAEKFA KLG  RT+IV+ L       KDANDALL ++++L ++I+NA   P  R++ F DLR  V  EL   D++ G    S P    ++KGFR+GEMTVLTGPTGAGKTTFL Q+SLDLA  G N LWGSFE++N +L+ K+M+Q+    LP+       +  +A+ADRF  LPL FM+FHG S+++EV+DAMEY  YV+D E ++LDN+QFM+          G K  FD+F   D+A+EKFR+FATE N+HV LVVHPRKE    +L ISSF G+AKATQ+AD V+I+Q    R   LD++KNR+DG LG  P+ FQ ++G  VE E
Sbjct:  222 LEKKAWQRLDP-PGGGWGLFGLHTIPNDATEIVLTEGEYDAMAVSQATGRHAVSLPNGCRSLPVQTLPLLERFDKIYLWMDNDEPGREGAEKFAKKLGVNRTYIVQCL-----EAKDANDALLNKDIDLNQVIENATLTPHDRIVTFKDLRNDVLQELLEPDQYSGTPVPSLPRFTQIIKGFRRGEMTVLTGPTGAGKTTFLGQVSLDLAEQGENVLWGSFEIKNTRLLHKLMKQFSRDSLPVSTEVNAREKFEALADRFETLPLYFMKFHGGSDMDEVLDAMEYAVYVNDVEHIILDNMQFMIT-------RNGKKSSFDKFEVQDLAIEKFRKFATEHNVHVTLVVHPRKEDAAAKLSISSFFGSAKATQEADTVIIIQNDANRRKCLDIKKNRFDGTLGFSPIYFQSKSGRYVEDE 627          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|1210531758|dbj|GAX09725.1| (hypothetical protein FisN_19Lh195 [Fistulifera solaris])

HSP 1 Score: 466.848 bits (1200), Expect = 1.978e-157
Identity = 236/427 (55.27%), Postives = 307/427 (71.90%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTV-GAD-AKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDL------DPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDA---VADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREG-GMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDN 415
            ++ KAWQRL P+   GWG FG HT+ GAD ++ I++TEGE+DAMAV+QAT   +VSLPNGCRSLPVEVLPLLE +E+I LWMDND PG EGA  F+ K+G  R F+V+   E+       D PKDANDALL+  +L+R+I  A+ +P  +V+ FSDL+  V  E+ + +K+EG    S P   A++KG R+GE+TV+TGPTG+GKTTFL Q+SLDLA  G+N LWGSFEV+N +LI K+++Q+   PLP GD  S D    +A RFG+LPL F++FHG+S +EEV+DAMEY  YVHD E +VLDNLQFM+   SR+      G   FD+F   D+A+EKFR+FATE+N+H+ LVVHPRKE +  RLGISS  G+AKATQ+ADNV+ILQ+   + YLDVRKNR+ GDLG   + F + T    E   N
Sbjct:  109 LENKAWQRLDPA-GGGWGFFGYHTLDGADKSQPIVVTEGEYDAMAVWQATGIPSVSLPNGCRSLPVEVLPLLEDYEKIYLWMDNDGPGQEGARVFSQKIGLGRCFMVQPTLENTGCLEFADLPKDANDALLQGHDLKRIIMEAKPVPHEQVLSFSDLQDSVLHEILHPEKYEGTKLPSLPKFSAVVKGLRRGELTVVTGPTGSGKTTFLGQMSLDLAEQGVNVLWGSFEVRNTRLIHKLLQQFARQPLPKGDPSSADKLKDIAKRFGELPLHFLKFHGASELEEVLDAMEYAVYVHDCEHIVLDNLQFMI---SRQNLATRSGNSNFDKFDAQDIAIEKFRKFATERNVHLSLVVHPRKEDESSRLGISSIYGSAKATQEADNVLILQKDNQKKYLDVRKNRFSGDLGATEIFFDRATNRYTEAPTN 531          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|1210521625|dbj|GAX19615.1| (hypothetical protein FisN_19Hh195 [Fistulifera solaris])

HSP 1 Score: 466.848 bits (1200), Expect = 1.322e-155
Identity = 236/429 (55.01%), Postives = 307/429 (71.56%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTV-GAD-AKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDL------DPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDA---VADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMA---MGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDN 415
            ++ KAWQRL P+   GWG FG HT+ GAD ++ I++TEGE+DAMAV+QAT   A+SLPNGCRSLPVEVLPLLE +E+I LWMDND PG EGA  F+ K+G  R F+V+   E        D PKDANDALL+  +L+R+I  A+ +P  +V+ FSDL+  V  E+ + +K+EG    S P   A++KG R+GE+TV+TGPTG+GKTTFL Q+SLDLA  G+N LWGSFEV+N +LI K+++Q+   PLP GD  S D    +A RFG+LPL F++FHG+S +EEV+DAMEY  YVHD E +VLDNLQFM++   + SR      G   FD+F   D+A+EKFR+FATE+N+H+ LVVHPRKE +  RLGISS  G+AKATQ+ADNV+ILQ+   + YLDVRKNR+ GDLG   + F + T    E   N
Sbjct:  237 LENKAWQRLDPA-GGGWGFFGYHTLDGADKSQPIVVTEGEYDAMAVWQATGIPAISLPNGCRSLPVEVLPLLEDYEKIYLWMDNDGPGQEGARVFSQKIGLGRCFMVQPTLESTGCLEFADLPKDANDALLQGHDLKRIIMEAKPVPHEQVLSFSDLQDSVLHEILHPEKYEGTKLPSLPKFSAVVKGLRRGELTVVTGPTGSGKTTFLGQMSLDLAEQGVNVLWGSFEVRNTRLIHKLLQQFARQPLPRGDPSSADKLKDIAKRFGELPLHFLKFHGASELEEVLDAMEYAVYVHDCEHIVLDNLQFMISRQNLASR-----SGNSNFDKFDAQDIAIEKFRKFATERNVHLSLVVHPRKEDESARLGISSIYGSAKATQEADNVLILQKDNQKKYLDVRKNRFSGDLGATEIFFDRATNRYREAPTN 659          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|224005435|ref|XP_002291678.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972197|gb|EED90529.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 451.825 bits (1161), Expect = 7.863e-151
Identity = 237/434 (54.61%), Postives = 308/434 (70.97%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVR------ALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMG-------------DLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKG-GFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVED 414
            +++KAWQRL   P  G+GLFG HTV  DA EII+TEGEFDAMAVYQAT R AVSLPNGCRSLP+EVL LLE F+ + LWMDND PG EGAE FA KLG  R  +V+      A PE   PPKDAN+ALL   ++  +++ A  LP  R+++FSDLR  V  E+ N +K+ G    S PG  +L+KGFR+GE+TVLTGPTG+GKTTFL Q SLDL   G+N LWGSFE++N +L+ K+++QY    LP+G              + +L ++AD+F  LP+ FM+FHG S+V++V+DAMEY AYVHD E ++LDN+QFM++  S E     GKG  FD+F   D+A+EKFR+FATE N+HV LVVHPRKE +  +LG+SSF G+AKATQ+AD V+ILQ    R ++DV+KNR+DG +G  PL FQ+++G   E  D
Sbjct:  170 IEKKAWQRL-DPPGGGFGLFGWHTVPHDATEIIITEGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPE---PPKDANEALLTGWDINELLEEASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQSVE-----GKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDEGAKLGMSSFYGSAKATQEADTVLILQSDGKRKFVDVKKNRFDGTIGHSPLYFQRKSGRYSENPD 594          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|224015275|ref|XP_002297295.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968040|gb|EED86397.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 451.44 bits (1160), Expect = 4.675e-149
Identity = 236/434 (54.38%), Postives = 308/434 (70.97%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVR------ALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMG-------------DLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKG-GFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVED 414
            +++KAWQRL   P  G+GLFG HTV  +A EII+TEGEFDAMAVYQAT R AVSLPNGCRSLP+EVL LLE F+ + LWMDND PG EGAE FA KLG  R  +V+      A PE   PPKDAN+ALL   ++  +++ A  LP  R+++FSDLR  V  E+ N +K+ G    S PG  +L+KGFR+GE+TVLTGPTG+GKTTFL Q SLDL   G+N LWGSFE++N +L+ K+++QY    LP+G              + +L ++AD+F  LP+ FM+FHG S+V++V+DAMEY AYVHD E ++LDN+QFM++  S E     GKG  FD+F   D+A+EKFR+FATE N+HV LVVHPRKE +  +LG+SSF G+AKATQ+AD V+ILQ    R ++DV+KNR+DG +G  PL FQ+++G   E  D
Sbjct:  267 IEKKAWQRL-DPPGGGFGLFGWHTVPHNATEIIITEGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPE---PPKDANEALLTGWDINELLEEASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQSVE-----GKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDEGAKLGMSSFYGSAKATQEADTVLILQSDGKRKFVDVKKNRFDGTIGHSPLYFQRKSGRYSENPD 691          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|953501133|emb|CEG37503.1| (mitochondrial helicase twinkle [Plasmopara halstedii])

HSP 1 Score: 443.736 bits (1140), Expect = 1.339e-146
Identity = 226/417 (54.20%), Postives = 297/417 (71.22%), Query Frame = 0
Query:    4 KAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPP--KDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLG 418
            KA Q+L P     WGLFG +TV   A E++LTEGEFDA+AV+QAT  AAVSLPNGC+SLP  VLPLLERFERI LWMDND  G    EKFA KLG  R +IVR +P +      KDANDAL   L+L  +I  A+R+P +++  F +LR  V++E+ N  K  GV +++FP L  L+KG R GE+TVLTGPTG GKTT LSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD+++ +A ADRF  LP+ F+RF GS++V+EV+DAMEY  Y HD + ++LDN+QFMMA        G G+ G+D+F + D A++KFR+FA+ KN+H+ LV+HPRKE +   L +SS  GTAKATQ+ADNV+ILQR+ G+  LD+RKNR+DG LG +PL F  Q+ +L+EV   G+ 
Sbjct:  252 KAKQQLVPK-GGSWGLFGWNTVPTAAHELVLTEGEFDALAVHQATGMAAVSLPNGCQSLPPSVLPLLERFERIYLWMDNDASGQANVEKFAAKLGMARCYIVR-MPVNASSAYLKDANDALRAGLDLSAIINAAERIPHSQITSFQELRRDVYEEIVNPLKACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTLLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQRNLS-GDVQAFEATADRFEALPMHFLRFFGSTDVDEVLDAMEYAVYAHDVQHILLDNVQFMMA--------GQGR-GYDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEEEDHDLTLSSVFGTAKATQEADNVLILQRNHGKSKLDIRKNRFDGSLGSIPLKFNPQSASLLEVSSEGMS 656          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|923130163|ref|XP_013758547.1| (helicase twinkle [Thecamonas trahens ATCC 50062] >gi|906555189|gb|KNC48432.1| helicase twinkle [Thecamonas trahens ATCC 50062])

HSP 1 Score: 440.654 bits (1132), Expect = 6.886e-145
Identity = 227/427 (53.16%), Postives = 297/427 (69.56%), Query Frame = 0
Query:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVR--ALPEDLDP--------PKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGL 417
            +  K  QRL P    GW LFG  TV  +A+E+++TEGE+DAMAV+QAT R AVSLPNG RSLPVEVLP+LERFERI+LWMD+D  G+EGAEK A KLG  RT++VR    P  ++         PKDANDAL   L+++ ++ +A R+P  +++ FSDLR  +  EL N ++  GV +++ P L  +LKG RKGE+T+LTGPTGAGKT+ LSQLSLD A  G+ TLWGSFE+ NV+L++KMM+Q  + PL    L   D  AD F  LP+ FM+F GSS++  V+DAMEY  YV+D E +VLDNLQFM +        G GK GF+RF  +D ++E  R+FATE N+H+ LVVHPRK  D   L  SS  GTAKATQ+ADNV+I+QR +   YLD+RKNR+DGDLG+VP  F K T  + E++ + +
Sbjct:  312 LSAKHLQRLDPK-GGGWSLFGWQTVPDEARELVVTEGEYDAMAVWQATGRPAVSLPNGARSLPVEVLPMLERFERIVLWMDDDMAGMEGAEKLARKLGVERTYLVRPSGCPAVVEAVAASGGKLPKDANDALRAGLDMDALVVSAARMPHKQIVEFSDLRSEILTELSNPEQACGVQSRTLPALNKVLKGHRKGELTILTGPTGAGKTSILSQLSLDYAAQGVPTLWGSFELSNVRLVKKMMQQLASLPLEH-HLDQFDYWADAFEALPMHFMKFFGSSDIHAVLDAMEYAVYVNDVEHIVLDNLQFMHS--------GQGK-GFERFELLDKSIEALRKFATEHNVHISLVVHPRKVDDDTLLNTSSVFGTAKATQEADNVIIIQRGKKYTYLDIRKNRFDGDLGIVPYTFDKSTCKIRELDADAM 727          
BLAST of EWM30134.1 vs. NCBI_GenBank
Match: gi|1214671349|gb|OWY95358.1| (Twinkle protein, partial [Phytophthora megakarya])

HSP 1 Score: 434.491 bits (1116), Expect = 3.846e-144
Identity = 223/415 (53.73%), Postives = 289/415 (69.64%), Query Frame = 0
Query:    4 KAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAMGSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLG 418
            KA Q+L P     WGLFG +TV   A E++LTEGEFDAMAV+QAT  AAVSLPNGC+SLP  VLPLLERF+RI LWMDND  G    EKFA K+G  R +IVR         KDANDAL   L+L  ++  A+R+P +++  F +LR  V++E+ N  K  GV ++SFP L  L+KG R GE+TVLTGPTG GKTTFLSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD+ + +A ADRF  LP+ F+RF GS+ V+EV+DAMEY  Y +D + ++LDN+QFMMA        G G+ GFD+F + D A++KFR+FA+ KN+H+ LV+HPRKE +   L +SS  GTAKATQ+ADNV+ILQR +G   LD+RKNR+DG LG +PL F   + +L E    G+ 
Sbjct:  143 KAKQQLVPK-GGSWGLFGWNTVPTAADELVLTEGEFDAMAVHQATGMAAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQSNVEKFAAKVGMTRCYIVRMPATAASSVKDANDALRAGLDLTAIVNAAERMPHSQITTFEELRRDVYEEIVNPLKACGVQSRSFPSLNRLMKGHRMGEVTVLTGPTGCGKTTFLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQRNLS-GDVNAFEAAADRFEALPMHFLRFFGSTEVDEVLDAMEYAVYAYDVQHILLDNVQFMMA--------GQGR-GFDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEQEDQDLTLSSVFGTAKATQEADNVLILQRTRGESKLDIRKNRFDGTLGSIPLKFDPDSASLREFGSEGMS 546          
The following BLAST results are available for this feature:
BLAST of EWM30134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112786|gb|EWM30134.1|0.000e+0100.00DNA helicase DnaB [Nannochloropsis gaditana][more]
gi|219125812|ref|XP_002183166.1|4.458e-16357.00predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072235052|gb|OEU19781.1|2.644e-15856.56P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1210531758|dbj|GAX09725.1|1.978e-15755.27hypothetical protein FisN_19Lh195 [Fistulifera sol... [more]
gi|1210521625|dbj|GAX19615.1|1.322e-15555.01hypothetical protein FisN_19Hh195 [Fistulifera sol... [more]
gi|224005435|ref|XP_002291678.1|7.863e-15154.61predicted protein, partial [Thalassiosira pseudona... [more]
gi|224015275|ref|XP_002297295.1|4.675e-14954.38predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|953501133|emb|CEG37503.1|1.339e-14654.20mitochondrial helicase twinkle [Plasmopara halsted... [more]
gi|923130163|ref|XP_013758547.1|6.886e-14553.16helicase twinkle [Thecamonas trahens ATCC 50062] >... [more]
gi|1214671349|gb|OWY95358.1|3.846e-14453.73Twinkle protein, partial [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna542rna542Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications