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Properties
| Property Name | Value |
|---|
| Product | 5-formyltetrahydrofolate cyclo-ligase |
| Orig transcript id | gnl|cribi|Naga_100473g5.7772.mrna |
| Orig protein id | gnl|cribi|Naga_100473g5.7772 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:950230..952559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5418 ID=rna5418|Name=rna5418|organism=Nannochloropsis gaditana|type=mRNA|length=2371bp
GGCGGTGTCGATAGGCAGCTACGACAATGTTCCCCATTCGAAAGCGTGTC
ATCCCACAGTACACCTTCTGTGGCTACTGGGGAACGAGATTATATATCGC
GCGTGCCCAGACTGTCATCCTATGGTACTTGGATGCCATATTTTTGAGGC
TGCTATTCTTCTAAGCGCAGGGTGGGAGGGAGAAGGAGAGAGGAGGTTGA
CTCGTGTCAGCTCGAGTCACAGCATTCCACGCTGAGCAAGCGGGAACTAT
CTTGAAGTCAAGACTTTTCATCACACAAACACGTCCACTTCAGGAGGCTG
GGTGCGGCATCGACCGGCTTCATAAGGCTTGCCATCGCATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGTCACAGGCCCTGCTCCTGGCGATATGG
TCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTCCCAGTCTCC
AAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTCTCCCTCCCT
TCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCGATAATAAGT
GCAATCGTTTGGGTCATGGCAAAGGCTACTACGATTCTTTCCTCTCTCGC
CTCTTTGCCAGCCACGCGGCGGCAGGTCGGGCGCGGCCCATGACCATCGG
TTTGGCGCTGGAGGAGCAAATGGTGGCGTCGGTGCCAGTGGATACCTTCG
ACCTCCCGTTGGATGCAGTTGTGACACCAGACAAGGTGTATTTTCGAAAA
GACCGGGAAAGGAAAGGGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAG
AGGAAGGTAATTTGGGGCCTGTATGCGGCTTATAATGGGAGACAAACTTG
CGCAGGCAAGGTGCATAACGGATGGCAAAAAGATCTCGGGAGCGCTGAGG
ATGGAAACGGTCGCACGACAATTGAATAGGAGGCAAAAGAAGGTGAGAGA
AGGAAGCACTCCATTCCTTCCAGCGAAGTCGTGCCATGGAGTGCGTAGCA
AGGAGCGTCCGGGTATCCGGCTGGGACAGTCTCTGTCTCATGCGTCAGCG
AACGCCCAGTAACCTGATAATTAATAATCGTACGCGTAGCTATGACGGAT
TTGTCCGCGTCAGTATGAGCGGGTTTGCCCCCCAAGTGCGAAAGACACCC
TTCGAGCAGGGCCGTGGAACGCGTCGCAGTGTCATCCATTTGCTGGCCCC
CCAGCATCGACAAACACATTGTCGTGGTATTCTTTGGACTTAACAACATT
TGGCCGCCCACTACATGGACGAATCTTAAATATTATCAAATTGCAACTGG
AAAGTAGGGAATTGCAAGCAGTTGTGTCCTTGCGATAAATGACAACACAA
GTCTCCCGCCCCTGTCGATCTATCCAGTCTATCTTCGATCAAAACTATCC
GCGAAAGGCCATCTCCAAATGAGAGGAAACGATGAAGACTATACTCGTAC
AGACATTACCACGTAAATGTCAAGTGTGTGTTTTTTCTCGCTTTATTGAA
ATTCAAGTCGAGCTGGGTGGGTCCCGGGATGCTTGGACAAGTACTTCGAT
ACCTCTGATAAGCGTTTTCTCCCATTCAGTCTTACAATGAGGGCATTATA
CATGCAAAGAGCTTTACGCTAAAGGAATGGTACGATTGCGCGTGTTTTGG
TGTTTGTTAAGCAAGAGACCCCCCCCCGTCCATCAGGCGACACCGTTCGC
TATTTTTACGGAGTGGAGGGCAGATTACTTCCTTGCACGTTAAACTTTTT
TTTCAGGACAGGGACATCGACGCCGGGGCGAGACACTTGGCTCTTGATCC
TTACCCTGTGGCTTGATAATATTCGGCATGAGTTAATTTCATGCTACTAA
ATTTTACCCTCAGACAAAATC back to topprotein sequence of rna5418 >rna5418-protein ID=rna5418-protein|Name=rna5418|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MLRAWGALASIFNPARQYLGLPLTFIATDTFVSLAATRKAFITLQDIQVW
ESLVPPRERPSGSTCFSRFPRPPSTHLRSFMTSANPPNAGASLSEKKKNL
RKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEV
PTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSS
FPVSKWGIPEPPLPPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDS
FLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV
YFRKDRERKGEEEEGGVGARRGR back to topmRNA from alignment at CM002465.1:950230..952559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5418 ID=rna5418|Name=rna5418|organism=Nannochloropsis gaditana|type=mRNA|length=2330bp|location=Sequence derived from alignment at CM002465.1:950230..952559- (Nannochloropsis gaditana)
GGCGGTGTCGATAGGCAGCTACGACAATGTTCCCCATTCGAAAGCGTGTC
ATCCCACAGTACACCTTCTGTGGCTACTGGGGAACGAGATTATATATCGC
GCGTGCCCAGACTGTCATCCTATGGTACTTGGATGCCATATTTTTGAGGC
TGCTATTCTTCTAAGCGCAGGGTGGGAGGGAGAAGGAGAGAGGAGGTTGA
CTCGTGTCAGCTCGAGTCACAGCATTCCACGCTGAGCAAGCGGGAACTAT
CTTGAAGTCAAGACTTTTCATCACACAAACACGTCCACTTCAGGAGGCTG
GGTGCGGCATCGACCGGCTTCATAAGGCTTGCCATCGCATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGTAGGTAAAACGTCGAGCCTGAAAAGTT
TTCCCGACCTGCCATGTCTACGGATAAATGCCTTCCTTCCTCCCTACTTC
CCTCTCTCCTTCCCTCCCTTCCTCCTCCCAGGTCACAGGCCCTGCTCCTG
GCGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTC
CCAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTC
TCCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCG
ATAATAAGTGCAATCGTTTGGGTCATGGCAAAGGCGAGTACCGGGCACGA
ATCTTGTCAGTTCCGAACCCTTCTCATGGAAACTCTCCATGACTCTTTGC
GTTATAAAGAGTCCTGCGTTTTCCGTTTACTAAGAAGGCTATAGCGGTAC
TTGATAGGAAGCACAAAGACCGTTTCTGAGAGAGCCCTACCACCCATCAC
AACACGACATTCGCGGCAAAGTTACATCGATATCCCTGCATCCATACTCG
CCAACCGTTCCGATACGGGTCTAACCCGCCCCCTCCTTCGGCTCCCTCCC
TCCCTCCCTCCCGCCCTCCCCTCCACCCTCCCTCCCACCCACATTCCCAT
CCTGCCAGGCTACTACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACG
CGGCGGCAGGTCGGGCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAG
CAAATGGTGGCGTCGGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGC
AGTTGTGACACCAGACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAG
GGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAGAGGAAGGTAATTTGGG
GCCTGTATGCGGCTTATAATGGGAGACAAACTTGCGCAGGCAAGGTGCAT
AACGGATGGCAAAAAGATCTCGGGAGCGCTGAGGATGGAAACGGTCGCAC
GACAATTGAATAGGAGGCAAAAGAAGGTGAGAGAAGGAAGCACTCCATTC
CTTCCAGCGAAGTCGTGCCATGGAGTGCGTAGCAAGGAGCGTCCGGGTAT
CCGGCTGGGACAGTCTCTGTCTCATGCGTCAGCGAACGCCCAGTAACCTG
ATAATTAATAATCGTACGCGTAGCTATGACGGATTTGTCCGCGTCAGTAT
GAGCGGGTTTGCCCCCCAAGTGCGAAAGACACCCTTCGAGCAGGGCCGTG
GAACGCGTCGCAGGTAATGGACATTCTTCAATTTTATTCGATTGTCAGGC
TGGTGTATACATGCATTTCTAGCTGAACAGTTATCGATCCGCTCCACGTT
GGACGTGTGTGACGCATTACTTTGATGAGTCTCGTATCTTGCTTTCAAGT
ACTTGCATTCGGCACAAATTTGACACAATTCTCAATCTTATCTCCCAACT
CCGCCGCACCACACTACATCGAACCTCCTT back to topCoding sequence (CDS) from alignment at CM002465.1:950230..952559- >rna5418 ID=rna5418|Name=rna5418|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at CM002465.1:950230..952559- (Nannochloropsis gaditana)
GCTACTACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACGCGGCGGCA
GGTCGGGCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAGCAAATGGT
GGCGTCGGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGCAGTTGTGA
CACCAGACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAGGGGAGGAG
GAAGAAGGGGGAGTCGGTGCGAGGAGAGGAAGGTAAGTCACAGGCCCTGC
TCCTGGCGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCT
CCTTCCCAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCC
TTCTCTCCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGC
CTTCGATAATAAGTGCAATCGTTTGGGTCATGGCAAAGATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGCTACTACGATTCTTTCCTCTCTCGCCT
CTTTGCCAGCCACGCGGCGGCAGGTCGGGCGCGGCCCATGACCATCGGTT
TGGCGCTGGAGGAGCAAATGGTGGCGTCGGTGCCAGTGGATACCTTCGAC
CTCCCGTTGGATGCAGTTGTGACACCAGACAAGGTGTATTTTCGAAAAGA
CCGGGAAAGGAAAGGGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAGAG
GAAGGTAAGTCACAGGCCCTGCTCCTGGCGATATGGTCATGCTTCCTCTT
TCTTCTCCGAAAGACGTGAGCTCCTTCCCAGTCTCCAAATGGGGCATCCC
TGAGCCCCCCCTCCCTCCCTCCTTCTCTCCCTCCCTTCCTCCCCTCGACC
TCGTCCTCGTACCCGGCGTGGCCTTCGATAATAAGTGCAATCGTTTGGGT
CATGGCAAAGATGCTCAGAGCGTGGGGTGCCCTGGCGTCGATCTTCAACC
CCGCAAGGCAGTATCTCGGCCTTCCACTCACATTCATTGCTACCGACACC
TTTGTCTCCCTTGCTGCAACGAGAAAAGCATTCATAACCCTCCAAGACAT
TCAAGTCTGGGAGTCCTTGGTCCCTCCGCGCGAGCGGCCGTCGGGCTCAA
CTTGTTTCTCACGTTTCCCCCGCCCTCCCTCTACCCATTTGCGGTCCTTT
ATGACATCCGCAAATCCTCCGAATGCGGGAGCTTCCCTCTCCGAGAAGAA
AAAGAACCTTCGAAAGAGCATCACCGCCCGCTTGCGTGCTTTGGACGATT
CGTACGTGGCCGCGGAAGCCAGCCGCCTTTTCCCCCGCTTGCTTGCGTTG
GAGGACTACAAGGATAGCACCTGTGTCAGTCTTTACCTCTCCATGCCAGC
CAAAGAGGTACCCACATTCCCCGACTTGCTCAAGACAGTAATGACAGACG
GGAAAAGGGCGGAAGGGACAGCGAGGGATGTCTACGTGCCTAAGGCTACT
ACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACGCGGCGGCAGGTCGG
GCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAGCAAATGGTGGCGTC
GGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGCAGTTGTGACACCAG
ACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAGGGGAGGAGGAAGAA
GGGGGAGTCGGTGCGAGGAGAGGAAGGTAAGTCACAGGCCCTGCTCCTGG
CGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTCC
CAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTCT
CCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCGA
TAATAAGTGCAATCGTTTGGGTCATGGCAAAGATGCTCAGAGCGTGGGGT
GCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCTTCCACT
CACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGAGAAAAG
CATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTCCCTCCG
CGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCGCCCTCC
CTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGAATGCGG
GAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATCACCGCC
CGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAGCCGCCT
TTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCTGTGTCA
GTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCCGACTTG
CTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGCGAGGGA
TGTCTACGTGCCTAAG back to top
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