EWM25269.1, cds5405 (CDS) Nannochloropsis gaditana

Overview
NameEWM25269.1
Unique Namecds5405
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:951688..952221 -
Alignment locationCM002465.1:951377..951578 -
Alignment locationCM002465.1:950816..951051 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25269.1
Product5-formyltetrahydrofolate cyclo-ligase
Orig transcript idgnl|cribi|Naga_100473g5.7772.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:951688..952221 -
CM002465.1supercontigCM002465.1:951377..951578 -
CM002465.1supercontigCM002465.1:950816..951051 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR024185FTHF_cligase-like
IPR002698FTHF_cligase
Homology
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|585106998|gb|EWM25268.1| (5-formyltetrahydrofolate cyclo-ligase [Nannochloropsis gaditana] >gi|585106999|gb|EWM25269.1| 5-formyltetrahydrofolate cyclo-ligase [Nannochloropsis gaditana])

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MLRAWGALASIFNPARQYLGLPLTFIATDTFVSLAATRKAFITLQDIQVWESLVPPRERPSGSTCFSRFPRPPSTHLRSFMTSANPPNAGASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVYFRKDRERKGEEEEGGVGARRGR 323
            MLRAWGALASIFNPARQYLGLPLTFIATDTFVSLAATRKAFITLQDIQVWESLVPPRERPSGSTCFSRFPRPPSTHLRSFMTSANPPNAGASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVYFRKDRERKGEEEEGGVGARRGR
Sbjct:    1 MLRAWGALASIFNPARQYLGLPLTFIATDTFVSLAATRKAFITLQDIQVWESLVPPRERPSGSTCFSRFPRPPSTHLRSFMTSANPPNAGASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVYFRKDRERKGEEEEGGVGARRGR 323          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|553191142|ref|XP_005855329.1| (5-formyltetrahydrofolate cyclo-ligase [Nannochloropsis gaditana CCMP526] >gi|422293734|gb|EKU21034.1| 5-formyltetrahydrofolate cyclo-ligase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 175.252 bits (443), Expect = 1.339e-51
Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 0
Query:   81 MTSANPPNAGASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPK 178
            MTSAN   AGASLSEKKKNLRKSITARLRALDDSYVAAE SRLFPRLLAL++YKDSTCVSLYLSMPAKEVPTFPDLL+ VMTDGKRAE  ARDVYVPK
Sbjct:    1 MTSANSSKAGASLSEKKKNLRKSITARLRALDDSYVAAEVSRLFPRLLALDEYKDSTCVSLYLSMPAKEVPTFPDLLEIVMTDGKRAERRARDVYVPK 98          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|873232549|emb|CEM05089.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 177.948 bits (450), Expect = 7.482e-51
Identity = 106/255 (41.57%), Postives = 149/255 (58.43%), Query Frame = 0
Query:   70 PRPPSTHLRSFMTSANPPNAGA--SLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSF----SPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQM--VASVPVDTFDLPLDAVVTPDKVYFRKDRERKGEEEEGG 316
            P  PS+   S  TS   P A +  ++SE+KK LR+ +  +L++L    +  +++ +F +L     +  S CV +YLSMP+ E+ T   L++     GKR       V+VP+V G  P DM M+ +SS  ++SSFP+S WGIPE  L  +           +DLV+ PGVAFD    RLGHGKGYYD FL+RLFAS    GR R  TIG+ L EQ+  +A++P+D+ D+ LD VVTPD VY      R+GE+   G
Sbjct:    4 PHAPSSARASVSTSDVQPGATSVSAISEQKKALRRQVRGQLKSLSHESIEPQSAAVFAQLSQHPTFVRSQCVCVYLSMPSGEIDTHT-LVREAFRQGKR-------VFVPRVVGKNPPDMRMVEVSSVDEISSFPMSPWGIPELSLDETLRREDGTYCGDIDLVICPGVAFDQSGRRLGHGKGYYDCFLARLFASLKDRGRPRTTTIGIGLREQLLPLATIPMDSLDMFLDWVVTPDGVY-EGAEGRRGEDAAWG 249          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|813103253|ref|XP_012194074.1| (5-formyltetrahydrofolate cyclo-ligase [Saprolegnia parasitica CBS 223.65] >gi|641541962|gb|KDO35707.1| 5-formyltetrahydrofolate cyclo-ligase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 160.229 bits (404), Expect = 2.309e-44
Identity = 98/216 (45.37%), Postives = 128/216 (59.26%), Query Frame = 0
Query:   91 ASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLP-PSFSPSLPPLD-----LVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            A +  +K  LRK I   LRAL    V A++  L   ++AL+ ++ +  VS+YL+M A+   +   L+  +   GKR       VYVPKV G    DMVML + S  ++++FP SKWGIPEPP   PS  P +  LD     +VLVPGVAFD +CNRLGHGKGYYD FL R +AS    G   P+TIG+ALE Q+V +VP    D  LD V TP  +
Sbjct:    3 ADVRSQKAVLRKHIAGLLRALSRDEVVAQSEALAQHVVALDVFRHARSVSVYLAMEAEAKTS--TLVDALFAAGKR-------VYVPKVIGAKSEDMVMLRVDSATEMATFPKSKWGIPEPPSSLPSGRPRIDALDALDVDIVLVPGVAFDPRCNRLGHGKGYYDCFLER-YASR--NGGKLPVTIGIALEAQIVDAVPTSGHDKMLDMVATPQGI 206          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|1173948599|gb|OQR96709.1| (5-formyltetrahydrofolate cyclo-ligase [Achlya hypogyna])

HSP 1 Score: 158.688 bits (400), Expect = 1.053e-43
Identity = 97/211 (45.97%), Postives = 124/211 (58.77%), Query Frame = 0
Query:   96 KKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPP-LPPSFSPSLPPL-----DLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            +KK LRK +   LRA+    + A+++ L   ++AL+  + + CV +YLSM   E  T P +L  +   GK+       VYVPKVTG    DMVML + S  +++SFP SKWGIPEPP L P+ +P +  L     D+VLVPGVAFD   NRLGHGKGYYD F  R    +   G   P TIGLAL+ QMV +VP    D  LD V TP  V
Sbjct:   15 QKKALRKQVEGALRAMTPGAIVAQSNALAQHIIALDAIRTAQCVCVYLSME-HEARTAP-ILTQLFAAGKK-------VYVPKVTGMRSEDMVMLQVDSENEMASFPKSKWGIPEPPELLPNGTPRINALDALDIDVVLVPGVAFDAHRNRLGHGKGYYDCFFQRYALRN---GGELPATIGLALDVQMVPAVPTSDHDKVLDMVATPTGV 213          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|669143206|ref|XP_008607165.1| (5-formyltetrahydrofolate cyclo-ligase [Saprolegnia diclina VS20] >gi|530740862|gb|EQC39104.1| 5-formyltetrahydrofolate cyclo-ligase [Saprolegnia diclina VS20])

HSP 1 Score: 157.532 bits (397), Expect = 2.664e-43
Identity = 96/222 (43.24%), Postives = 127/222 (57.21%), Query Frame = 0
Query:   91 ASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSFSPSLPP------------LDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            A +  +K  LRK I   LR L    V  ++  L   ++AL+ ++D+  VS+YL+M A E  T      + + D   A G  + +YVPKV G    DMVML + S  ++++FP SKWGIPEPP      PSLP             +D+VLVPGVAFD++CNRLGHGKGYYD F  R +AS    G   P+TIG+ALE Q+V +VP    D  LD V TP  +
Sbjct:    3 ADIRSQKTVLRKRIAGLLRTLSRDEVVEQSEALTQHVVALDVFRDARSVSIYLAMEA-EAKT------STLVDALFAAG--KTIYVPKVIGAKSEDMVMLRVDSTAEMTTFPKSKWGIPEPP------PSLPSGLARIDALDALDVDIVLVPGVAFDHRCNRLGHGKGYYDCFFER-YASR--NGGKLPVTIGIALEAQIVDAVPTSGHDKVLDMVATPQGI 206          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|675206575|ref|XP_008912172.1| (5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica INRA-310] >gi|567957678|gb|ETK83277.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica] >gi|567986354|gb|ETL36678.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica] >gi|568087569|gb|ETN02438.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica INRA-310] >gi|570947732|gb|ETP12989.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 151.369 bits (381), Expect = 9.035e-41
Identity = 92/210 (43.81%), Postives = 122/210 (58.10%), Query Frame = 0
Query:   97 KKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPL------PPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            KK LR+ I A L+AL DS V  ++  L  ++ AL ++  +  +S+YL MP KE  T   LL+     GK+       V+VPK+TG +  D++ML  +S  D+  FP  KW IP+PPL      P   +     L+LVL+PGVAFD +  RLGHGKGYYDSFL RL   + A G   P TIGL L  Q++  VP+   D  LD VVTP +V
Sbjct:   21 KKELRRRIGATLKALPDSEVTEQSRLLAEKICALPEFARARGISVYLEMP-KEAAT-SKLLEAAFAGGKK-------VFVPKITGRSAEDLMMLQATSMDDIRCFPKDKWQIPDPPLLSDTGTPRDDAVQGDELELVLLPGVAFDRQGGRLGHGKGYYDSFLRRLTEHYNAIGHPPPTTIGLCLTPQLIEQVPLAAHDKMLDLVVTPTEV 221          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|566020310|gb|ETI43221.1| (5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica P1569] >gi|568046027|gb|ETM43152.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica] >gi|570323927|gb|ETO71875.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica P1976] >gi|570980409|gb|ETP41092.1| 5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica P10297])

HSP 1 Score: 150.984 bits (380), Expect = 1.131e-40
Identity = 92/210 (43.81%), Postives = 122/210 (58.10%), Query Frame = 0
Query:   97 KKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPL------PPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            KK LR+ I A L+AL DS V  ++  L  ++ AL ++  +  +S+YL MP KE  T   LL+     GK+       V+VPK+TG +  D++ML  +S  D+  FP  KW IP+PPL      P   +     L+LVL+PGVAFD +  RLGHGKGYYDSFL RL   + A G   P TIGL L  Q++  VP+   D  LD VVTP +V
Sbjct:   21 KKELRRRIGATLKALPDSEVTEQSRLLAEKICALPEFARARGISVYLEMP-KEAAT-SKLLEAAFAGGKK-------VFVPKITGRSAEDLMMLQATSMDDIRCFPKDKWQIPDPPLLSDTGTPRDDAVQGDELELVLLPGVAFDRQGGRLGHGKGYYDSFLRRLTERYNAIGHPPPTTIGLCLTPQLIEQVPLAAHDKMLDLVVTPTEV 221          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|695411368|ref|XP_009525455.1| (hypothetical protein PHYSODRAFT_494504 [Phytophthora sojae] >gi|348682922|gb|EGZ22738.1| hypothetical protein PHYSODRAFT_494504 [Phytophthora sojae])

HSP 1 Score: 149.058 bits (375), Expect = 4.873e-40
Identity = 93/210 (44.29%), Postives = 116/210 (55.24%), Query Frame = 0
Query:   97 KKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPL------PPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            K  LR+ I A L+ L D  V  ++ RL  R+ AL ++  +  VS+YL MP KE  T   L      D K        V+VPK+TG +  D+ ML   S  D+  FP  KW IP+PPL      P   +     L+LVL+PGVAFD +  RLGHGKGYYD FL RL   + A G A P TIGL L  Q+V  VP+   D  LD VVTPD+V
Sbjct:    6 KTELRRRIGATLKGLPDEEVLEQSRRLAERVCALPEFARARGVSVYLEMP-KEAATSGLLEAAFAADKK--------VFVPKITGRSAEDLKMLQAKSMGDIRRFPKDKWLIPDPPLLTEGGAPRDDAMQGDELELVLLPGVAFDRRGGRLGHGKGYYDCFLRRLTEYYDAIGHAPPTTIGLCLTPQLVEQVPLAAHDRMLDLVVTPDEV 206          
BLAST of EWM25269.1 vs. NCBI_GenBank
Match: gi|568015699|gb|ETL89876.1| (5-formyltetrahydrofolate cyclo-ligase [Phytophthora parasitica])

HSP 1 Score: 149.443 bits (376), Expect = 4.885e-40
Identity = 91/210 (43.33%), Postives = 121/210 (57.62%), Query Frame = 0
Query:   97 KKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPL------PPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV 300
            KK LR+ I   L+AL DS V  ++  L  ++ AL ++  +  +S+YL MP KE  T   LL+     GK+       V+VPK+TG +  D++ML  +S  D+  FP  KW IP+PPL      P   +     L+LVL+PGVAFD +  RLGHGKGYYDSFL RL   + A G   P TIGL L  Q++  VP+   D  LD VVTP +V
Sbjct:   21 KKELRRRIGVTLKALPDSEVTEQSRLLAEKICALPEFARARGISVYLEMP-KEAAT-SKLLEAAFAGGKK-------VFVPKITGRSAEDLMMLQATSMDDIRCFPKDKWQIPDPPLLSDTGTPRDDAVQGDELELVLLPGVAFDRQGGRLGHGKGYYDSFLRRLTERYNAIGHPPPTTIGLCLTPQLIEQVPLAAHDKMLDLVVTPTEV 221          
The following BLAST results are available for this feature:
BLAST of EWM25269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106998|gb|EWM25268.1|0.000e+0100.005-formyltetrahydrofolate cyclo-ligase [Nannochloro... [more]
gi|553191142|ref|XP_005855329.1|1.339e-5189.805-formyltetrahydrofolate cyclo-ligase [Nannochloro... [more]
gi|873232549|emb|CEM05089.1|7.482e-5141.57unnamed protein product [Vitrella brassicaformis C... [more]
gi|813103253|ref|XP_012194074.1|2.309e-4445.375-formyltetrahydrofolate cyclo-ligase [Saprolegnia... [more]
gi|1173948599|gb|OQR96709.1|1.053e-4345.975-formyltetrahydrofolate cyclo-ligase [Achlya hypo... [more]
gi|669143206|ref|XP_008607165.1|2.664e-4343.245-formyltetrahydrofolate cyclo-ligase [Saprolegnia... [more]
gi|675206575|ref|XP_008912172.1|9.035e-4143.815-formyltetrahydrofolate cyclo-ligase [Phytophthor... [more]
gi|566020310|gb|ETI43221.1|1.131e-4043.815-formyltetrahydrofolate cyclo-ligase [Phytophthor... [more]
gi|695411368|ref|XP_009525455.1|4.873e-4044.29hypothetical protein PHYSODRAFT_494504 [Phytophtho... [more]
gi|568015699|gb|ETL89876.1|4.885e-4043.335-formyltetrahydrofolate cyclo-ligase [Phytophthor... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5418rna5418Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications