rna5416, rna5416 (mRNA) Nannochloropsis gaditana

Overview
Namerna5416
Unique Namerna5416
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1453
Alignment locationCM002465.1:948879..950472 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100473g3.7773.mrna
Orig protein idgnl|cribi|Naga_100473g3.7773
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:948879..950472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100473g3gene5237Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5416rna5416-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25270.1cds5403Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5416 ID=rna5416|Name=rna5416|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCCCGTGGGAGAGAGA
AACGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTACGCAACCCACCATTGAATTATGAAC
AAAGATACCGCAAAGCAGCCGCATTTATTCGCTGCGGTCAAGTATACACC
TTTGCAGCTGGAGCTTAAGGTGCTAGCCCTCGTCGTCCTCAACTCCCTCA
TGCCACAGGTGGAAGCTTTCCTGCCCCCACCCGTGAACCGTCAGGTAATA
TCCACGATGAATATCATCACAACACGGCCGAAACCGTTCAAAACCGACAG
AAAGTGCCACGGCCACAGGGTAAGGATCAAGAGCCAAGTGTCTCGCCCCG
GCGTCGATGTCCCTGTCCTGAAAAAAAAGTTTAACGTGCAAGGAAGTAAT
CTGCCCTCCACTCCGTAAAAATAGCGAACGGTGTCGCCTGATGGACGGGG
GGGGGTCTCTTGCTTAACAAACACCAAAACACGCGCAATCGTACCATTCC
TTTAGCGTAAAGCTCTTTGCATGTATAATGCCCTCATTGTAAGACTGAAT
GGGAGAAAACGCTTATCAGAGGTATCGAAGTACTTGTCCAAGCATCCCGG
GACCCACCCAGCTCGACTTGAATTTCAATAAAGCGAGAAAAAACACACAC
TTGACATTTACGTGGTAATGTCTGTACGAGTATAGTCTTCATCGTTTCCT
CTCATTTGGAGATGGCCTTTCGCGGATAGTTTTGATCGAAGATAGACTGG
ATAGATCGACAGGGGCGGGAGACTTGTGTTGTCATTTATCGCAAGGACAC
AACTGCTTGCAATTCCCTACTTTCCAGTTGCAATTTGATAATATTTAAGA
TTCGTCCATGTAGTGGGCGGCCAAATGTTGTTAAGTCCAAAGAATACCAC
GACAATGTGTTTGTCGATGCTGGGGGGCCAGCAAATGGATGACACTGGGC
CGTGTGAGTTAAGGAGGTTCGATGTAGTGTGGTGCGGCGGAGTTGGGAGA
TAAGATTGAGAATTGTGTCAAATTTGTGCCGAATGCAAGTACTTGAAAGC
AAGATACGAGACTCATCAAAGTAATGCGTCACACACGTCCAACGTGGAGC
GGATCGATAACTGTTCAGCTAGAAATGCATGTATACACCAGCCTGACAAT
CGAATAAAATTGAAGAATGTCCATTACCTGCGACGCGTTCCACGGCCCTG
CTC
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protein sequence of rna5416

>rna5416-protein ID=rna5416-protein|Name=rna5416|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MYIKDSTAYFKNDHTFETSKTEERHQKQMERRDIDPNKLAVPEGNPVGER
NDEGGANRLERLNEYVQEGNYYQARQEYIAVLEHKNHGAHLKTPTSLGRP
STCSRQTGGSFPAPTREPSGNIHDEYHHNTAETVQNRQKVPRGKDQEPSV
SPRRRCPCPEKKV
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mRNA from alignment at CM002465.1:948879..950472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5416 ID=rna5416|Name=rna5416|organism=Nannochloropsis gaditana|type=mRNA|length=1594bp|location=Sequence derived from alignment at CM002465.1:948879..950472+ (Nannochloropsis gaditana)
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCccgtgggagagaga
aacGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTACGCAACCCACCATTGAATTATGAAC
AAAGATACCGCAAAGCAGCCGCATTTATTCGCTGCGGTCAAGTATACACC
TTTGCAGCTGGAGCTTAAGGTGCTagccctcgtcgtcctcaacTCCCTCA
TGCCACAGGTGGAAGctttcctgcccccacccGTGAACCGTCAGGTAATA
TCCACGATGAATATCATCACAACACGGCCGAAACCGTTCAAAACCGACAG
AAAGTGCCACGGGTGAGTAAATTATCGTCAACGTCTTTTTAACAATTCAA
ACTCCTCTCGCGGTAAAAcaaaagcgaggaagagcgaAAAAAAGATTTTG
TCTGAGGGTAAAATTTAGTAGCATGAAATTAACTCATGCCGAATATTATC
AAGCCACAGGGTAAGGATCAAGAGCCAAGTGTCTCGCCCCGGCGTCGATG
TCCCTGTCCTGAAAAAAAAGTTTAACGTGCAAGGAAGTAATCTGCCCTCC
ACTCCGTAAAAATAGCGAACGGTGTCGCCTGAtggacgggggggggtctC
TTGCTTAACAAACACCAAAACACGCGCAATCGTACCATTCCTTTAGCGTA
AAGCTCTTTGCATGTATAATGCCCTCATTGTAAGACTGAATGGGAGAAAA
CGCTTATCAGAGGTATCGAAGTACTTGTCCAAGCATCCCGGGACCCACCC
AGCTCGACTTGAATTTCAATAAAGCGAGAAAAAACACACACTTGACATTT
ACGTGGTAATGTCTGTACGAGTATAGTCTTCATCGTTTCCTCTCATTTGG
AGATGGCCTTTCGCGGATAGTTTTGATCGAAGATAGACTGGATAGATCGA
CAGGGGCGGGAGACTTGTGTTGTCATTTATCGCAAGGACACAACTGCTTG
CAATTCCCTACTTTCCAGTTGCAATTTGATAATATTTAAGATTCGTCCAT
GTAGTGGGCGGCCAAATGTTGTTAAGTCCAAAGAATACCACGACAATGTG
TTTGTCGATGCTGGGGGGCCAGCAAATGGATGACACTGGGCCGTGTGAGT
TAAGGAGGTTCGATGTAGTGTGGTGCGGCGGAGTTGGGAGATAAGATTGA
GAATTGTGTCAAATTTGTGCCGAATGCAAGTACTTGAAAGCAAGATACGA
GACTCATCAAAGTAATGCGTCACACACGTCCAACGTGGAGCGGATCGATA
ACTGTTCAGCTAGAAATGCATGTATACACCAGCCTGACAATCGAATAAAA
TTGAAGAATGTCCATTACCTGCGACGCGTTCCACGGCCCTGCTC
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Coding sequence (CDS) from alignment at CM002465.1:948879..950472+

>rna5416 ID=rna5416|Name=rna5416|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002465.1:948879..950472+ (Nannochloropsis gaditana)
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCccgtgggagagaga
aacGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTGGAAGctttcctgcccccacccGTGA
ACCGTCAGGTAATATCCACGATGAATATCATCACAACACGGCCGAAACCG
TTCAAAACCGACAGAAAGTGCCACGGGGTAAGGATCAAGAGCCAAGTGTC
TCGCCCCGGCGTCGATGTCCCTGTCCTGAAAAAAAAGTTTAAATGTACAT
AAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGAAACATCGA
AAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACATAGATCCC
AACAAGCTTGCTGTTCCAGAGGGTAATCccgtgggagagagaaacGACGA
AGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCAGGAAGGGA
ATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAACACAAAAAT
CATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCGTCAACCTG
TTCTCGCCAAACCGGTGGAAGctttcctgcccccacccGTGAACCGTCAG
GTAATATCCACGATGAATATCATCACAACACGGCCGAAACCGTTCAAAAC
CGACAGAAAGTGCCACGGGGTAAGGATCAAGAGCCAAGTGTCTCGCCCCG
GCGTCGATGTCCCTGTCCTGAAAAAAAAGTTTAAATGTACATAAAAGACA
GTACAGCCTATTTTAAGAATGATCATACTTTCGAAACATCGAAAACAGAG
GAAAGACATCAAAAACAGATGGAAAGGCGTGACATAGATCCCAACAAGCT
TGCTGTTCCAGAGGGTAATCccgtgggagagagaaacGACGAAGGCGGTG
CAAATCGCCTTGAACGTTTAAATGAATACGTGCAGGAAGGGAATTACTAC
CAGGCAAGGCAAGAATACATTGCTGTTTTGGAACACAAAAATCATGGCGC
ACATCTTAAGACTCCTACATCGCTAGGCAGGCCGTCAACCTGTTCTCGCC
AAACCGGTGGAAGctttcctgcccccacccGTGAACCGTCAGGTAATATC
CACGATGAATATCATCACAACACGGCCGAAACCGTTCAAAACCGACAGAA
AGTGCCACGGGGTAAGGATCAAGAGCCAAGTGTCTCGCCCCGGCGTCGAT
GTCCCTGTCCTGAAAAAAAAGTTTAA
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Synonyms
Publications